Wall clock time and date at job start Mon Mar 30 2020 02:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86794 * 120.00262 * 2 1 4 4 H 1.48503 * 109.47401 * 240.00059 * 3 2 1 5 5 H 1.48504 * 109.47192 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47349 * 120.00033 * 3 2 1 7 7 C 1.38644 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00149 * 179.97438 * 7 2 1 9 9 O 1.34923 * 119.99773 * 359.97438 * 7 2 1 10 10 C 1.42904 * 117.00295 * 180.02562 * 9 7 2 11 11 C 1.52989 * 109.47533 * 180.02562 * 10 9 7 12 12 C 1.53046 * 113.15245 * 275.37164 * 11 10 9 13 13 S 1.81421 * 89.89146 * 211.85103 * 12 11 10 14 14 O 1.42100 * 112.75626 * 280.47671 * 13 12 11 15 15 O 1.42102 * 112.75037 * 136.72699 * 13 12 11 16 16 C 1.53046 * 113.15293 * 175.00081 * 11 10 9 17 17 H 0.97004 * 119.99960 * 359.97438 * 1 2 3 18 18 H 1.09003 * 109.46748 * 59.99368 * 10 9 7 19 19 H 1.09005 * 109.46744 * 300.00572 * 10 9 7 20 20 H 1.08997 * 112.53000 * 45.18485 * 11 10 9 21 21 H 1.08999 * 113.14496 * 327.11375 * 12 11 10 22 22 H 1.08999 * 113.14487 * 96.59446 * 12 11 10 23 23 H 1.08997 * 113.14353 * 263.40546 * 16 11 10 24 24 H 1.08999 * 113.14822 * 32.88700 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 3.1036 1.6963 -1.2125 5 1 1.2848 2.7464 0.0006 6 1 3.1036 1.6963 1.2125 7 6 2.0090 -1.2007 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3343 -2.3691 -0.0005 10 6 2.1125 -3.5677 -0.0005 11 6 1.1805 -4.7810 -0.0012 12 6 0.7089 -5.1782 1.3996 13 16 0.6478 -6.9161 0.8824 14 8 -0.5223 -7.2275 0.1386 15 8 1.1893 -7.7985 1.8558 16 6 1.9256 -6.1121 -0.1239 17 1 -0.4850 0.8401 0.0004 18 1 2.7413 -3.5925 0.8894 19 1 2.7413 -3.5925 -0.8905 20 1 0.3636 -4.6797 -0.7157 21 1 1.4533 -4.9871 2.1725 22 1 -0.2703 -4.7721 1.6532 23 1 1.9656 -6.4881 -1.1461 24 1 2.9045 -6.1010 0.3555 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261008097.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:27 Heat of formation + Delta-G solvation = -82.853708 kcal Electronic energy + Delta-G solvation = -11550.407625 eV Core-core repulsion = 9171.921340 eV Total energy + Delta-G solvation = -2378.486285 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 206.045 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.63259 -37.11315 -35.98386 -35.26521 -31.65970 -26.60260 -26.49284 -24.02556 -20.44806 -18.74152 -17.55636 -16.39895 -16.29993 -16.03661 -15.26697 -14.70542 -13.97931 -13.47791 -13.12443 -12.94381 -12.18906 -12.15805 -12.01976 -11.48374 -11.26420 -11.02587 -10.88173 -10.47719 -10.19766 -10.06880 -9.55300 -9.24220 -8.03336 -6.00664 -3.65387 0.26468 2.08042 3.28251 3.30038 3.33508 3.76086 4.08320 4.23795 4.46888 4.95545 5.06234 5.29630 5.34280 5.56664 5.66586 5.94990 6.05086 6.41561 6.48506 6.56258 7.41129 8.37006 9.42414 10.08629 11.20163 Molecular weight = 206.04amu Principal moments of inertia in cm(-1) A = 0.091901 B = 0.006949 C = 0.006771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 304.603693 B = 4028.359885 C = 4134.178697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.024 3.976 3 Si 0.927 3.073 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.365 4.365 8 H 0.063 0.937 9 O -0.294 6.294 10 C 0.095 3.905 11 C -0.061 4.061 12 C -0.579 4.579 13 S 2.399 3.601 14 O -0.920 6.920 15 O -0.938 6.938 16 C -0.593 4.593 17 H 0.260 0.740 18 H 0.030 0.970 19 H 0.031 0.969 20 H 0.118 0.882 21 H 0.140 0.860 22 H 0.127 0.873 23 H 0.122 0.878 24 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.377 -10.929 1.093 11.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.175 4.175 3 Si 0.754 3.246 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.445 4.445 8 H 0.080 0.920 9 O -0.209 6.209 10 C 0.016 3.984 11 C -0.082 4.082 12 C -0.709 4.709 13 S 2.583 3.417 14 O -0.917 6.917 15 O -0.935 6.935 16 C -0.722 4.722 17 H 0.069 0.931 18 H 0.048 0.952 19 H 0.049 0.951 20 H 0.136 0.864 21 H 0.158 0.842 22 H 0.146 0.854 23 H 0.141 0.859 24 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.473 -11.912 1.306 12.236 hybrid contribution 1.276 1.902 -0.237 2.302 sum 3.749 -10.011 1.070 10.743 Atomic orbital electron populations 1.70005 1.05428 1.26169 1.51429 1.24970 0.95695 0.97800 0.98999 0.86021 0.78534 0.81633 0.78417 1.20338 1.20807 1.20363 1.20749 0.90199 0.82584 1.50919 0.91956 1.85622 1.31607 1.10312 1.93406 1.21834 0.91898 0.86077 0.98580 1.21372 0.98920 0.93605 0.94283 1.30926 1.10929 1.23078 1.05952 1.08651 0.77474 0.77634 0.77982 1.93696 1.43889 1.83818 1.70329 1.93603 1.78880 1.63617 1.57435 1.30978 1.17008 1.08611 1.15618 0.93067 0.95190 0.95067 0.86395 0.84171 0.85411 0.85925 0.84134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.54 13.67 55.48 0.76 -26.78 14 2 C 0.02 0.70 5.49 -17.51 -0.10 0.60 14 3 Si 0.93 21.77 29.55 -169.99 -5.02 16.74 14 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 14 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 14 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 14 7 C -0.37 -10.58 9.89 30.88 0.31 -10.28 14 8 H 0.06 1.68 7.77 -52.49 -0.41 1.27 14 9 O -0.29 -8.20 9.78 -16.49 -0.16 -8.36 14 10 C 0.10 1.96 5.79 37.15 0.22 2.18 14 11 C -0.06 -0.97 3.68 -90.58 -0.33 -1.31 14 12 C -0.58 -7.84 7.49 37.18 0.28 -7.56 14 13 S 2.40 27.69 7.55 -107.50 -0.81 26.87 14 14 O -0.92 -13.54 18.18 -57.30 -1.04 -14.59 14 15 O -0.94 -13.08 18.18 -57.30 -1.04 -14.12 14 16 C -0.59 -6.62 7.50 37.18 0.28 -6.34 14 17 H 0.26 7.51 8.31 -40.82 -0.34 7.17 14 18 H 0.03 0.58 7.89 -51.93 -0.41 0.17 14 19 H 0.03 0.62 8.14 -51.93 -0.42 0.20 14 20 H 0.12 1.93 8.14 -51.93 -0.42 1.51 14 21 H 0.14 1.75 7.94 -51.93 -0.41 1.34 14 22 H 0.13 1.75 8.14 -51.93 -0.42 1.33 14 23 H 0.12 1.13 8.14 -51.93 -0.42 0.71 14 24 H 0.14 1.36 8.12 -51.93 -0.42 0.94 14 LS Contribution 230.67 15.07 3.48 3.48 Total: -1.00 -37.12 230.67 -5.67 -42.80 By element: Atomic # 1 Polarization: -0.86 SS G_CDS: -2.48 Total: -3.33 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: 0.65 Total: -22.71 kcal Atomic # 7 Polarization: -27.54 SS G_CDS: 0.76 Total: -26.78 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -2.24 Total: -37.07 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 27.69 SS G_CDS: -0.81 Total: 26.87 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -37.12 -5.67 -42.80 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261008097.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.057 kcal (2) G-P(sol) polarization free energy of solvation -37.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds