Wall clock time and date at job start Mon Mar 30 2020 02:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30662 * 1 3 3 Si 1.86805 * 120.00319 * 2 1 4 4 H 1.48503 * 109.46825 * 274.98081 * 3 2 1 5 5 H 1.48492 * 109.47073 * 34.98252 * 3 2 1 6 6 H 1.48502 * 109.47034 * 154.98483 * 3 2 1 7 7 C 1.40119 * 119.99641 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99484 * 186.28057 * 7 2 1 9 9 C 1.41544 * 120.00273 * 6.27683 * 7 2 1 10 10 N 1.34091 * 120.71627 * 353.89512 * 9 7 2 11 11 C 1.31388 * 120.45920 * 180.13469 * 10 9 7 12 12 N 1.31982 * 122.13002 * 0.06327 * 11 10 9 13 13 C 1.32739 * 121.29461 * 359.94191 * 12 11 10 14 14 C 1.37760 * 119.04448 * 359.87149 * 13 12 11 15 15 C 1.50402 * 121.68795 * 180.55336 * 14 13 12 16 16 C 1.53073 * 109.64598 * 343.15740 * 15 14 13 17 17 O 1.43203 * 108.54219 * 48.83360 * 16 15 14 18 18 C 1.42793 * 113.29538 * 289.53130 * 17 16 15 19 19 H 0.96999 * 119.99770 * 0.02562 * 1 2 3 20 20 H 1.07997 * 118.92940 * 180.02562 * 11 10 9 21 21 H 1.09000 * 109.44211 * 103.21517 * 15 14 13 22 22 H 1.09001 * 109.44267 * 223.10142 * 15 14 13 23 23 H 1.09001 * 109.62002 * 168.54818 * 16 15 14 24 24 H 1.08994 * 109.62384 * 288.92490 * 16 15 14 25 25 H 1.09001 * 109.35526 * 291.55163 * 18 17 16 26 26 H 1.08992 * 109.35985 * 171.95594 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3830 2.1071 -1.3948 5 1 1.4949 2.6199 0.8027 6 1 3.5870 1.4119 0.5920 7 6 2.0071 -1.2135 0.0005 8 1 3.0823 -1.2162 0.1029 9 6 1.3058 -2.4357 -0.1329 10 7 -0.0349 -2.4589 -0.1386 11 6 -0.6809 -3.5966 -0.2601 12 7 -0.0527 -4.7512 -0.3792 13 6 1.2731 -4.8177 -0.3829 14 6 2.0014 -3.6546 -0.2623 15 6 3.5054 -3.6596 -0.2717 16 6 4.0169 -5.0778 -0.0069 17 8 3.3199 -5.9822 -0.8712 18 6 1.9474 -6.1564 -0.5177 19 1 -0.4850 0.8401 -0.0004 20 1 -1.7608 -3.5866 -0.2621 21 1 3.8632 -3.3204 -1.2438 22 1 3.8753 -2.9896 0.5044 23 1 5.0863 -5.1256 -0.2127 24 1 3.8320 -5.3453 1.0334 25 1 1.8835 -6.6901 0.4305 26 1 1.4459 -6.7373 -1.2916 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074308888.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:59 Heat of formation + Delta-G solvation = -31.647526 kcal Electronic energy + Delta-G solvation = -13203.024023 eV Core-core repulsion = 10859.440099 eV Total energy + Delta-G solvation = -2343.583924 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 206.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.36689 -38.99841 -36.09022 -34.00921 -33.49058 -31.03587 -28.71613 -26.69446 -25.19444 -23.12887 -21.69210 -19.57411 -18.23137 -17.44982 -16.80903 -16.72621 -15.91061 -15.40754 -14.91696 -14.72591 -14.44318 -13.97047 -13.44084 -13.15769 -12.99183 -12.70191 -12.64907 -12.00648 -11.84629 -11.50513 -10.86290 -10.78753 -10.42812 -9.71166 -9.36400 -8.41558 -6.78961 0.70342 0.90655 1.39389 1.53780 1.55159 2.16966 2.77098 2.94028 3.53594 3.73845 3.98757 4.20906 4.24503 4.41064 4.43922 4.49915 4.59857 4.82900 5.04787 5.07547 5.11862 5.27561 5.55114 5.86822 6.04026 6.11990 6.52286 6.75391 7.05104 8.13616 8.31180 Molecular weight = 206.08amu Principal moments of inertia in cm(-1) A = 0.041775 B = 0.011772 C = 0.009318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.094095 B = 2377.961357 C = 3004.069504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.021 3.979 3 Si 0.994 3.006 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.247 1.247 7 C -0.439 4.439 8 H 0.105 0.895 9 C 0.234 3.766 10 N -0.554 5.554 11 C 0.269 3.731 12 N -0.627 5.627 13 C 0.108 3.892 14 C -0.298 4.298 15 C -0.075 4.075 16 C 0.062 3.938 17 O -0.387 6.387 18 C 0.127 3.873 19 H 0.285 0.715 20 H 0.178 0.822 21 H 0.062 0.938 22 H 0.078 0.922 23 H 0.127 0.873 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.676 -2.360 0.863 7.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.203 4.203 3 Si 0.813 3.187 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.170 1.170 7 C -0.472 4.472 8 H 0.123 0.877 9 C 0.106 3.894 10 N -0.275 5.275 11 C -0.022 4.022 12 N -0.352 5.352 13 C -0.030 4.030 14 C -0.307 4.307 15 C -0.113 4.113 16 C -0.014 4.014 17 O -0.305 6.305 18 C 0.049 3.951 19 H 0.096 0.904 20 H 0.195 0.805 21 H 0.081 0.919 22 H 0.096 0.904 23 H 0.145 0.855 24 H 0.076 0.924 25 H 0.098 0.902 26 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.613 -2.343 0.716 6.125 hybrid contribution 0.331 0.935 0.158 1.004 sum 5.944 -1.409 0.875 6.171 Atomic orbital electron populations 1.70174 1.09308 1.29930 1.27281 1.27203 0.95765 1.05107 0.92197 0.85018 0.79318 0.74982 0.79407 1.18863 1.19141 1.17000 1.20157 0.95824 0.89666 1.41598 0.87723 1.19252 0.88653 0.93166 0.88336 1.69356 1.09467 1.27754 1.20887 1.24821 1.00808 0.84415 0.92186 1.68055 1.09599 1.30448 1.27147 1.21787 0.90737 0.96369 0.94118 1.21018 0.98191 0.94720 1.16733 1.20584 0.90387 0.98529 1.01840 1.22819 0.97598 0.87185 0.93775 1.87976 1.21288 1.65009 1.56199 1.21078 0.80996 0.90654 1.02329 0.90448 0.80481 0.91941 0.90391 0.85472 0.92394 0.90185 0.86758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.29 11.56 21.85 0.25 -39.03 15 2 C 0.02 1.04 5.49 85.32 0.47 1.51 15 3 Si 0.99 35.98 29.57 68.60 2.03 38.01 15 4 H -0.26 -9.34 7.11 99.48 0.71 -8.64 15 5 H -0.27 -9.27 7.11 99.48 0.71 -8.56 15 6 H -0.25 -8.37 7.11 99.48 0.71 -7.66 15 7 C -0.44 -22.81 8.73 23.54 0.21 -22.60 15 8 H 0.10 4.92 6.34 -2.91 -0.02 4.90 15 9 C 0.23 12.97 6.57 40.27 0.26 13.24 15 10 N -0.55 -31.64 8.09 -193.52 -1.57 -33.20 15 11 C 0.27 13.92 12.26 180.95 2.22 16.14 15 12 N -0.63 -31.09 10.34 -188.80 -1.95 -33.04 15 13 C 0.11 5.06 6.71 42.25 0.28 5.34 15 14 C -0.30 -14.61 5.84 -19.41 -0.11 -14.72 15 15 C -0.07 -2.91 5.24 29.78 0.16 -2.75 15 16 C 0.06 1.93 6.85 72.01 0.49 2.42 15 17 O -0.39 -13.58 10.79 -148.98 -1.61 -15.19 15 18 C 0.13 4.64 6.94 71.17 0.49 5.13 15 19 H 0.28 13.43 8.29 -92.71 -0.77 12.66 15 20 H 0.18 8.02 8.06 -2.91 -0.02 7.99 15 21 H 0.06 2.42 8.14 -2.39 -0.02 2.40 15 22 H 0.08 2.90 7.01 -2.39 -0.02 2.88 15 23 H 0.13 2.98 8.14 -2.39 -0.02 2.96 15 24 H 0.06 1.69 8.08 -2.39 -0.02 1.67 15 25 H 0.08 2.60 8.14 -2.39 -0.02 2.58 15 26 H 0.11 3.87 8.14 -2.39 -0.02 3.85 15 Total: -1.00 -64.55 226.65 2.82 -61.73 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 1.20 Total: 17.03 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 4.47 Total: 3.71 kcal Atomic # 7 Polarization: -102.01 SS G_CDS: -3.27 Total: -105.28 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -1.61 Total: -15.19 kcal Atomic # 14 Polarization: 35.98 SS G_CDS: 2.03 Total: 38.01 kcal Total: -64.55 2.82 -61.73 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074308888.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.078 kcal (2) G-P(sol) polarization free energy of solvation -64.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds