Wall clock time and date at job start Mon Mar 30 2020 01:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35642 * 117.00045 * 2 1 4 4 C 1.38449 * 120.26131 * 270.27231 * 3 2 1 5 5 C 1.50700 * 119.98032 * 0.02562 * 4 3 2 6 6 C 1.38309 * 120.04764 * 180.25632 * 4 3 2 7 7 C 1.38823 * 120.59178 * 359.74123 * 6 4 3 8 8 C 1.50704 * 119.72891 * 180.02562 * 7 6 4 9 9 C 1.36486 * 120.54052 * 359.97438 * 7 6 4 10 10 C 1.40723 * 119.92690 * 0.02562 * 9 7 6 11 11 C 1.41149 * 120.28821 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00411 * 205.38318 * 11 10 9 13 13 C 1.39935 * 120.00259 * 25.38632 * 11 10 9 14 14 N 1.30869 * 119.99923 * 26.48754 * 13 11 10 15 15 Si 1.86802 * 120.00256 * 206.48801 * 13 11 10 16 16 H 1.48494 * 109.47087 * 179.97438 * 15 13 11 17 17 H 1.48492 * 109.47144 * 300.00213 * 15 13 11 18 18 H 1.48501 * 109.47028 * 59.99920 * 15 13 11 19 19 H 1.08998 * 109.46902 * 60.00944 * 1 2 3 20 20 H 1.09007 * 109.46952 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47644 * 300.00778 * 1 2 3 22 22 H 1.08997 * 109.47354 * 270.24239 * 5 4 3 23 23 H 1.09007 * 109.46299 * 30.24055 * 5 4 3 24 24 H 1.09001 * 109.47385 * 150.23524 * 5 4 3 25 25 H 1.07997 * 119.70209 * 179.76369 * 6 4 3 26 26 H 1.09004 * 109.46677 * 269.97764 * 8 7 6 27 27 H 1.08997 * 109.47266 * 29.97653 * 8 7 6 28 28 H 1.08997 * 109.47016 * 149.97644 * 8 7 6 29 29 H 1.07996 * 120.03916 * 180.02562 * 9 7 6 30 30 H 0.97001 * 119.99793 * 5.88949 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 2.3564 1.8328 -1.1958 5 6 2.0108 1.1694 -2.5041 6 6 2.9891 3.0627 -1.1907 7 6 3.3130 3.6856 0.0069 8 6 4.0017 5.0259 -0.0102 9 6 3.0117 3.0946 1.1997 10 6 2.3680 1.8434 1.2205 11 6 2.0534 1.2250 2.4497 12 1 1.9520 0.1511 2.5037 13 6 1.8728 2.0034 3.5985 14 7 1.4812 3.2475 3.4911 15 14 2.1906 1.2666 5.2855 16 1 1.9292 2.2896 6.3296 17 1 1.2915 0.1036 5.4951 18 1 3.6045 0.8212 5.3726 19 1 -0.3633 0.5137 -0.8901 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 2.8412 0.5392 -2.8225 23 1 1.1181 0.5571 -2.3761 24 1 1.8229 1.9322 -3.2598 25 1 3.2331 3.5429 -2.1268 26 1 5.0818 4.8792 -0.0167 27 1 3.7044 5.5759 -0.9030 28 1 3.7172 5.5920 0.8768 29 1 3.2669 3.5866 2.1266 30 1 1.2340 3.6049 2.6239 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082529345.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:58 Heat of formation + Delta-G solvation = -59.802711 kcal Electronic energy + Delta-G solvation = -13458.903736 eV Core-core repulsion = 11217.639254 eV Total energy + Delta-G solvation = -2241.264481 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.56916 -38.03716 -36.14462 -33.58228 -32.03060 -28.33299 -28.14395 -27.17995 -25.82117 -22.62370 -21.21805 -19.48894 -18.08281 -17.19488 -16.22215 -15.94250 -15.51715 -14.89922 -14.65050 -14.51543 -14.09108 -13.90524 -13.78341 -13.23515 -12.99228 -12.75675 -12.69880 -12.32126 -12.02789 -11.88888 -11.73300 -11.42054 -10.95012 -10.41169 -9.46728 -9.33758 -8.93841 -6.45143 0.73950 0.87727 1.47297 1.60760 1.77448 2.29474 2.57615 3.12922 3.60183 4.17220 4.25557 4.41519 4.50125 4.60472 4.65629 4.72030 4.75217 4.81781 4.87405 4.96489 5.04739 5.07229 5.29693 5.45844 5.59058 5.80344 5.90161 6.00783 6.19748 6.34819 6.58680 6.85026 7.20890 7.98498 Molecular weight = 206.10amu Principal moments of inertia in cm(-1) A = 0.028389 B = 0.013763 C = 0.009886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.072876 B = 2034.024273 C = 2831.672548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.340 6.340 3 C -0.063 4.063 4 C -0.073 4.073 5 C -0.096 4.096 6 C -0.240 4.240 7 C -0.063 4.063 8 C -0.101 4.101 9 C -0.234 4.234 10 C 0.057 3.943 11 C -0.539 4.539 12 H 0.066 0.934 13 C 0.006 3.994 14 N -0.811 5.811 15 Si 1.114 2.886 16 H -0.267 1.267 17 H -0.259 1.259 18 H -0.265 1.265 19 H 0.042 0.958 20 H 0.106 0.894 21 H 0.017 0.983 22 H 0.070 0.930 23 H 0.058 0.942 24 H 0.077 0.923 25 H 0.126 0.874 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.151 -0.720 -4.619 4.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.257 6.257 3 C -0.107 4.107 4 C -0.073 4.073 5 C -0.152 4.152 6 C -0.259 4.259 7 C -0.064 4.064 8 C -0.157 4.157 9 C -0.254 4.254 10 C 0.054 3.946 11 C -0.567 4.567 12 H 0.084 0.916 13 C -0.211 4.211 14 N -0.433 5.433 15 Si 0.930 3.070 16 H -0.192 1.192 17 H -0.183 1.183 18 H -0.190 1.190 19 H 0.061 0.939 20 H 0.124 0.876 21 H 0.035 0.965 22 H 0.089 0.911 23 H 0.077 0.923 24 H 0.096 0.904 25 H 0.144 0.856 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.235 -0.470 -3.026 3.071 hybrid contribution -0.361 -0.142 -1.474 1.524 sum -0.126 -0.613 -4.499 4.543 Atomic orbital electron populations 1.22901 0.81174 1.02747 0.99072 1.85867 1.19319 1.26276 1.94264 1.18655 1.08637 0.91315 0.92111 1.20194 0.97949 0.94471 0.94701 1.20619 1.01476 1.00133 0.93006 1.20408 1.11447 0.97170 0.96882 1.19721 0.96954 0.96771 0.92920 1.20722 0.99960 0.92652 1.02394 1.20663 1.08544 0.99377 0.96782 1.18289 0.90736 0.92194 0.93420 1.20533 1.45210 0.96411 0.94562 0.91611 1.28416 0.90196 0.93724 1.08727 1.70590 1.26865 1.15628 1.30235 0.83058 0.78615 0.76054 0.69229 1.19158 1.18335 1.19003 0.93928 0.87592 0.96459 0.91086 0.92315 0.90373 0.85593 0.90783 0.90231 0.92770 0.89239 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.42 10.76 113.37 1.22 2.64 16 2 O -0.34 -16.54 8.94 -89.56 -0.80 -17.34 16 3 C -0.06 -3.25 5.73 23.08 0.13 -3.12 16 4 C -0.07 -3.26 5.89 -19.80 -0.12 -3.38 16 5 C -0.10 -3.32 9.79 71.24 0.70 -2.62 16 6 C -0.24 -10.30 9.34 22.43 0.21 -10.09 16 7 C -0.06 -2.88 5.84 -20.13 -0.12 -3.00 16 8 C -0.10 -3.54 9.99 71.24 0.71 -2.83 16 9 C -0.23 -12.40 7.55 22.47 0.17 -12.23 16 10 C 0.06 3.18 5.30 -21.20 -0.11 3.06 16 11 C -0.54 -30.45 8.64 23.40 0.20 -30.25 16 12 H 0.07 3.77 7.73 -2.91 -0.02 3.75 16 13 C 0.01 0.31 4.91 85.25 0.42 0.73 16 14 N -0.81 -44.50 12.32 21.83 0.27 -44.23 16 15 Si 1.11 44.59 30.01 68.60 2.06 46.65 16 16 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 17 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 18 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 19 H 0.04 1.53 7.23 -2.39 -0.02 1.51 16 20 H 0.11 3.39 8.14 -2.38 -0.02 3.37 16 21 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 22 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 23 H 0.06 1.99 6.30 -2.38 -0.02 1.98 16 24 H 0.08 2.27 8.09 -2.39 -0.02 2.25 16 25 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 26 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.08 2.35 8.08 -2.39 -0.02 2.33 16 28 H 0.05 1.91 8.07 -2.39 -0.02 1.89 16 29 H 0.09 4.94 6.53 -2.91 -0.02 4.93 16 30 H 0.28 16.16 6.78 -92.71 -0.63 15.54 16 Total: -1.00 -62.80 255.76 6.20 -56.61 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 1.26 Total: 19.40 kcal Atomic # 6 Polarization: -64.50 SS G_CDS: 3.41 Total: -61.09 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.27 Total: -44.23 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.80 Total: -17.34 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.06 Total: 46.65 kcal Total: -62.80 6.20 -56.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082529345.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.197 kcal (2) G-P(sol) polarization free energy of solvation -62.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds