Wall clock time and date at job start Mon Mar 30 2020 02:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38229 * 119.62230 * 2 1 4 4 C 1.38625 * 119.16334 * 180.02562 * 3 2 1 5 5 C 1.38675 * 118.41932 * 359.97438 * 4 3 2 6 6 C 1.50706 * 120.41449 * 180.02562 * 5 4 3 7 7 H 1.09005 * 109.46702 * 145.00333 * 6 5 4 8 8 N 1.46899 * 109.47038 * 25.00186 * 6 5 4 9 9 C 1.50697 * 109.46931 * 265.00157 * 6 5 4 10 10 H 1.07998 * 120.00545 * 359.97438 * 9 6 5 11 11 C 1.37881 * 119.99709 * 180.02562 * 9 6 5 12 12 N 1.31513 * 120.00183 * 359.97438 * 11 9 6 13 13 Si 1.86798 * 120.00045 * 179.97438 * 11 9 6 14 14 H 1.48501 * 109.47285 * 89.99761 * 13 11 9 15 15 H 1.48494 * 109.47210 * 210.00028 * 13 11 9 16 16 H 1.48503 * 109.47030 * 330.00142 * 13 11 9 17 17 C 1.38172 * 119.16489 * 0.27960 * 5 4 3 18 18 C 1.50704 * 119.62072 * 179.69790 * 17 5 4 19 19 N 1.31860 * 119.61597 * 180.02562 * 2 1 3 20 20 H 1.09005 * 109.47086 * 90.00418 * 1 2 3 21 21 H 1.09000 * 109.47769 * 210.00264 * 1 2 3 22 22 H 1.09004 * 109.47162 * 330.00881 * 1 2 3 23 23 H 1.07997 * 120.41683 * 0.03781 * 3 2 1 24 24 H 1.07998 * 120.78871 * 180.02562 * 4 3 2 25 25 H 1.00907 * 110.99580 * 176.04059 * 8 6 5 26 26 H 1.00889 * 111.00263 * 299.99619 * 8 6 5 27 27 H 0.96996 * 120.00425 * 180.02562 * 12 11 9 28 28 H 1.09002 * 109.46634 * 89.99986 * 18 17 5 29 29 H 1.08996 * 109.47654 * 210.00376 * 18 17 5 30 30 H 1.09007 * 109.46700 * 330.00503 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1905 -0.0005 5 6 4.2266 -0.0344 -0.0005 6 6 5.7322 -0.0989 -0.0005 7 1 6.0591 -0.9556 0.5889 8 7 6.2752 1.1342 0.5848 9 6 6.2288 -0.2441 -1.4159 10 1 5.5246 -0.2859 -2.2337 11 6 7.5821 -0.3246 -1.6668 12 7 8.4397 -0.2742 -0.6710 13 14 8.1977 -0.5053 -3.4212 14 1 8.4210 0.8402 -4.0086 15 1 9.4742 -1.2639 -3.4222 16 1 7.1871 -1.2359 -4.2276 17 6 3.4766 -1.1948 -0.0059 18 6 4.1726 -2.5315 -0.0128 19 7 2.1586 -1.1463 -0.0005 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3634 0.8901 0.5137 23 1 1.6508 2.1373 0.0006 24 1 4.1366 2.1138 -0.0001 25 1 7.2807 1.0886 0.6555 26 1 5.9861 1.9433 0.0560 27 1 9.3918 -0.3304 -0.8475 28 1 4.3408 -2.8587 1.0132 29 1 3.5508 -3.2623 -0.5299 30 1 5.1296 -2.4401 -0.5266 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104456651.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:05 Heat of formation + Delta-G solvation = 16.339798 kcal Electronic energy + Delta-G solvation = -13255.754260 eV Core-core repulsion = 11050.084317 eV Total energy + Delta-G solvation = -2205.669943 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.70388 -35.31098 -32.82986 -32.14156 -30.40754 -28.58380 -26.49790 -25.45585 -22.50310 -21.41246 -19.84977 -16.59789 -16.05102 -15.56923 -14.69116 -14.13137 -14.02655 -13.38320 -12.96672 -12.79405 -12.56312 -12.03770 -11.86579 -11.58915 -11.42859 -11.34588 -11.10089 -10.96057 -10.70811 -10.11227 -9.72218 -8.95257 -8.72251 -8.70139 -7.84258 -7.26798 -6.15734 -4.33134 1.85364 2.08239 3.18111 3.26197 3.30522 4.25278 4.49633 4.83707 5.05923 5.29967 5.55490 5.70383 5.81715 5.85588 5.93107 6.04798 6.22954 6.30688 6.39731 6.50167 6.61484 6.86679 6.96963 7.06145 7.43421 7.64574 7.67707 8.01297 8.59224 8.71458 8.85783 9.03603 9.39036 10.81469 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.043156 B = 0.009418 C = 0.009071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.646255 B = 2972.293287 C = 3085.933053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.092 3.908 3 C -0.184 4.184 4 C -0.070 4.070 5 C -0.079 4.079 6 C 0.244 3.756 7 H 0.055 0.945 8 N -0.852 5.852 9 C -0.543 4.543 10 H 0.055 0.945 11 C 0.068 3.932 12 N -0.892 5.892 13 Si 0.897 3.103 14 H -0.280 1.280 15 H -0.284 1.284 16 H -0.273 1.273 17 C 0.123 3.877 18 C -0.103 4.103 19 N -0.491 5.491 20 H 0.067 0.933 21 H 0.068 0.932 22 H 0.066 0.934 23 H 0.120 0.880 24 H 0.130 0.870 25 H 0.357 0.643 26 H 0.310 0.690 27 H 0.267 0.733 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.461 1.252 0.671 8.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.046 4.046 3 C -0.204 4.204 4 C -0.096 4.096 5 C -0.081 4.081 6 C 0.134 3.866 7 H 0.073 0.927 8 N -0.382 5.382 9 C -0.583 4.583 10 H 0.073 0.927 11 C -0.135 4.135 12 N -0.531 5.531 13 Si 0.724 3.276 14 H -0.206 1.206 15 H -0.210 1.210 16 H -0.198 1.198 17 C -0.015 4.015 18 C -0.160 4.160 19 N -0.202 5.202 20 H 0.086 0.914 21 H 0.087 0.913 22 H 0.085 0.915 23 H 0.139 0.861 24 H 0.148 0.852 25 H 0.173 0.827 26 H 0.120 0.880 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.149 0.253 1.384 9.256 hybrid contribution 1.406 0.919 -1.963 2.584 sum -7.742 1.172 -0.579 7.852 Atomic orbital electron populations 1.20556 0.89945 1.02422 1.02116 1.20953 0.96176 0.88708 0.98799 1.21779 0.95139 0.98400 1.05055 1.21371 0.93290 0.98736 0.96173 1.21281 0.99438 0.92420 0.94998 1.17958 0.83740 0.91257 0.93687 0.92725 1.59556 1.18594 1.04257 1.55789 1.21741 0.91842 1.51622 0.93052 0.92689 1.25010 0.96723 0.94269 0.97479 1.69733 1.02548 1.50042 1.30730 0.86513 0.78312 0.78272 0.84489 1.20621 1.20979 1.19770 1.21030 0.88519 0.95908 0.96044 1.20743 1.01129 0.91945 1.02221 1.67229 1.09787 1.29325 1.13823 0.91399 0.91252 0.91547 0.86150 0.85199 0.82670 0.87998 0.92333 0.91526 0.91892 0.88574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.23 10.17 36.00 0.37 -0.86 16 2 C 0.09 1.64 6.78 -82.59 -0.56 1.08 16 3 C -0.18 -3.22 9.74 -39.44 -0.38 -3.61 16 4 C -0.07 -1.39 9.38 -39.28 -0.37 -1.76 16 5 C -0.08 -1.76 5.01 -104.48 -0.52 -2.28 16 6 C 0.24 5.95 2.27 -70.02 -0.16 5.79 16 7 H 0.06 1.44 7.02 -51.93 -0.36 1.08 16 8 N -0.85 -19.88 8.80 -6.65 -0.06 -19.94 16 9 C -0.54 -14.19 7.92 -34.44 -0.27 -14.46 16 10 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 11 C 0.07 1.78 5.38 -17.82 -0.10 1.68 16 12 N -0.89 -23.84 11.54 55.43 0.64 -23.20 16 13 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 17 C 0.12 2.63 6.78 -82.59 -0.56 2.07 16 18 C -0.10 -2.00 9.39 36.01 0.34 -1.66 16 19 N -0.49 -9.98 10.19 -5.74 -0.06 -10.04 16 20 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 21 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 23 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 24 H 0.13 2.44 6.41 -52.49 -0.34 2.10 16 25 H 0.36 8.88 7.08 -39.29 -0.28 8.60 16 26 H 0.31 6.85 7.26 -39.30 -0.29 6.56 16 27 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.10 2.02 6.14 -51.93 -0.32 1.71 16 LS Contribution 252.87 15.07 3.81 3.81 Total: -1.00 -27.72 252.87 -6.56 -34.29 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -3.66 Total: 13.55 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -2.22 Total: -14.01 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.52 Total: -53.18 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.72 -6.56 -34.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104456651.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.628 kcal (2) G-P(sol) polarization free energy of solvation -27.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds