Wall clock time and date at job start Mon Mar 30 2020 02:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38229 * 119.62230 * 2 1 4 4 C 1.38625 * 119.16334 * 180.02562 * 3 2 1 5 5 C 1.38675 * 118.41932 * 359.97438 * 4 3 2 6 6 C 1.50706 * 120.41449 * 180.02562 * 5 4 3 7 7 H 1.09005 * 109.46702 * 145.00333 * 6 5 4 8 8 N 1.46899 * 109.47038 * 25.00186 * 6 5 4 9 9 C 1.50697 * 109.46931 * 265.00157 * 6 5 4 10 10 H 1.07998 * 120.00545 * 359.97438 * 9 6 5 11 11 C 1.37881 * 119.99709 * 180.02562 * 9 6 5 12 12 N 1.31513 * 120.00183 * 359.97438 * 11 9 6 13 13 Si 1.86798 * 120.00045 * 179.97438 * 11 9 6 14 14 H 1.48501 * 109.47285 * 89.99761 * 13 11 9 15 15 H 1.48494 * 109.47210 * 210.00028 * 13 11 9 16 16 H 1.48503 * 109.47030 * 330.00142 * 13 11 9 17 17 C 1.38172 * 119.16489 * 0.27960 * 5 4 3 18 18 C 1.50704 * 119.62072 * 179.69790 * 17 5 4 19 19 N 1.31860 * 119.61597 * 180.02562 * 2 1 3 20 20 H 1.09005 * 109.47086 * 90.00418 * 1 2 3 21 21 H 1.09000 * 109.47769 * 210.00264 * 1 2 3 22 22 H 1.09004 * 109.47162 * 330.00881 * 1 2 3 23 23 H 1.07997 * 120.41683 * 0.03781 * 3 2 1 24 24 H 1.07998 * 120.78871 * 180.02562 * 4 3 2 25 25 H 1.00907 * 110.99580 * 176.04059 * 8 6 5 26 26 H 1.00889 * 111.00263 * 299.99619 * 8 6 5 27 27 H 0.96996 * 120.00425 * 180.02562 * 12 11 9 28 28 H 1.09002 * 109.46634 * 89.99986 * 18 17 5 29 29 H 1.08996 * 109.47654 * 210.00376 * 18 17 5 30 30 H 1.09007 * 109.46700 * 330.00503 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1905 -0.0005 5 6 4.2266 -0.0344 -0.0005 6 6 5.7322 -0.0989 -0.0005 7 1 6.0591 -0.9556 0.5889 8 7 6.2752 1.1342 0.5848 9 6 6.2288 -0.2441 -1.4159 10 1 5.5246 -0.2859 -2.2337 11 6 7.5821 -0.3246 -1.6668 12 7 8.4397 -0.2742 -0.6710 13 14 8.1977 -0.5053 -3.4212 14 1 8.4210 0.8402 -4.0086 15 1 9.4742 -1.2639 -3.4222 16 1 7.1871 -1.2359 -4.2276 17 6 3.4766 -1.1948 -0.0059 18 6 4.1726 -2.5315 -0.0128 19 7 2.1586 -1.1463 -0.0005 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3634 0.8901 0.5137 23 1 1.6508 2.1373 0.0006 24 1 4.1366 2.1138 -0.0001 25 1 7.2807 1.0886 0.6555 26 1 5.9861 1.9433 0.0560 27 1 9.3918 -0.3304 -0.8475 28 1 4.3408 -2.8587 1.0132 29 1 3.5508 -3.2623 -0.5299 30 1 5.1296 -2.4401 -0.5266 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104456651.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:05 Heat of formation + Delta-G solvation = -1.942563 kcal Electronic energy + Delta-G solvation = -13256.547043 eV Core-core repulsion = 11050.084317 eV Total energy + Delta-G solvation = -2206.462726 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.21925 -37.09511 -34.39332 -33.87894 -32.09819 -29.98548 -28.26227 -27.15948 -24.13021 -22.96965 -21.47750 -18.61572 -17.68167 -17.14576 -16.47864 -15.65235 -15.54620 -14.98552 -14.71470 -14.29159 -13.99769 -13.71965 -13.26510 -13.10733 -12.96623 -12.84430 -12.82125 -12.65067 -12.54500 -11.97600 -11.53112 -10.76459 -10.43001 -10.24326 -9.44207 -9.16352 -8.13748 -6.39409 0.35405 0.54768 1.35327 1.38762 1.47955 2.34969 2.96800 3.03455 3.46353 3.99255 4.08257 4.23515 4.33506 4.59775 4.69758 4.76765 4.79336 4.87126 4.89546 4.96814 5.17620 5.31450 5.39438 5.44451 5.62134 5.74651 6.00280 6.08076 6.61238 6.89342 7.07958 7.21491 7.36845 8.80385 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.043156 B = 0.009418 C = 0.009071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.646255 B = 2972.293287 C = 3085.933053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.088 3.912 3 C -0.177 4.177 4 C -0.078 4.078 5 C -0.112 4.112 6 C 0.252 3.748 7 H 0.024 0.976 8 N -0.844 5.844 9 C -0.552 4.552 10 H 0.040 0.960 11 C 0.028 3.972 12 N -0.912 5.912 13 Si 0.955 3.045 14 H -0.275 1.275 15 H -0.279 1.279 16 H -0.276 1.276 17 C 0.103 3.897 18 C -0.096 4.096 19 N -0.506 5.506 20 H 0.083 0.917 21 H 0.071 0.929 22 H 0.096 0.904 23 H 0.162 0.838 24 H 0.137 0.863 25 H 0.347 0.653 26 H 0.318 0.682 27 H 0.269 0.731 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.180 2.092 0.177 10.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.050 4.050 3 C -0.196 4.196 4 C -0.104 4.104 5 C -0.114 4.114 6 C 0.141 3.859 7 H 0.042 0.958 8 N -0.373 5.373 9 C -0.591 4.591 10 H 0.058 0.942 11 C -0.173 4.173 12 N -0.552 5.552 13 Si 0.781 3.219 14 H -0.201 1.201 15 H -0.205 1.205 16 H -0.201 1.201 17 C -0.034 4.034 18 C -0.154 4.154 19 N -0.217 5.217 20 H 0.102 0.898 21 H 0.090 0.910 22 H 0.115 0.885 23 H 0.180 0.820 24 H 0.155 0.845 25 H 0.162 0.838 26 H 0.128 0.872 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.875 1.095 0.892 10.966 hybrid contribution 1.836 0.689 -1.778 2.647 sum -9.039 1.784 -0.886 9.256 Atomic orbital electron populations 1.20687 0.86272 1.04114 1.03608 1.21852 0.98586 0.88177 0.96381 1.22189 0.94100 1.00160 1.03186 1.21581 0.94804 0.98058 0.95985 1.21159 0.98174 0.94025 0.98084 1.17693 0.85588 0.90370 0.92216 0.95811 1.59518 1.17717 1.04345 1.55755 1.21849 0.91901 1.51780 0.93600 0.94164 1.25655 0.96852 0.94024 1.00770 1.69819 1.02742 1.50417 1.32185 0.85610 0.77651 0.78258 0.80427 1.20068 1.20478 1.20071 1.21208 0.89323 0.96146 0.96680 1.20649 1.00018 0.92029 1.02672 1.67321 1.09041 1.30752 1.14573 0.89811 0.91005 0.88499 0.82009 0.84547 0.83787 0.87187 0.92165 0.90589 0.90447 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.00 10.17 71.23 0.72 -1.28 16 2 C 0.09 2.93 6.78 42.55 0.29 3.21 16 3 C -0.18 -5.67 9.74 22.36 0.22 -5.45 16 4 C -0.08 -3.04 9.38 22.47 0.21 -2.82 16 5 C -0.11 -5.02 5.01 -19.77 -0.10 -5.12 16 6 C 0.25 12.61 2.27 43.42 0.10 12.71 16 7 H 0.02 1.32 7.02 -2.38 -0.02 1.31 16 8 N -0.84 -40.00 8.80 -174.95 -1.54 -41.54 16 9 C -0.55 -29.43 7.92 25.60 0.20 -29.23 16 10 H 0.04 2.22 7.74 -2.91 -0.02 2.20 16 11 C 0.03 1.46 5.38 84.66 0.46 1.92 16 12 N -0.91 -49.43 11.54 21.45 0.25 -49.18 16 13 Si 0.95 42.37 29.54 68.60 2.03 44.40 16 14 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 15 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 16 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 17 C 0.10 4.44 6.78 42.54 0.29 4.73 16 18 C -0.10 -3.82 9.39 71.24 0.67 -3.15 16 19 N -0.51 -19.91 10.19 -172.08 -1.75 -21.67 16 20 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 21 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.10 1.60 8.08 -2.38 -0.02 1.58 16 23 H 0.16 3.78 8.06 -2.91 -0.02 3.76 16 24 H 0.14 4.96 6.41 -2.91 -0.02 4.94 16 25 H 0.35 17.62 7.08 -89.69 -0.63 16.99 16 26 H 0.32 14.08 7.26 -89.70 -0.65 13.43 16 27 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 28 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 29 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.07 3.16 6.14 -2.38 -0.01 3.14 16 Total: -1.00 -59.42 252.87 1.91 -57.52 By element: Atomic # 1 Polarization: 35.08 SS G_CDS: -0.13 Total: 34.95 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: 3.06 Total: -24.48 kcal Atomic # 7 Polarization: -109.34 SS G_CDS: -3.05 Total: -112.38 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -59.42 1.91 -57.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104456651.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.573 kcal (2) G-P(sol) polarization free energy of solvation -59.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds