Wall clock time and date at job start Mon Mar 30 2020 02:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30761 * 1 3 3 Si 1.86794 * 120.00051 * 2 1 4 4 H 1.48501 * 109.47013 * 239.99745 * 3 2 1 5 5 H 1.48499 * 109.47157 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47276 * 120.00310 * 3 2 1 7 7 C 1.40166 * 119.99503 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99774 * 179.97438 * 7 2 1 9 9 C 1.40235 * 120.00207 * 0.02562 * 7 2 1 10 10 C 1.39799 * 126.66347 * 0.17470 * 9 7 2 11 11 C 1.38693 * 107.54006 * 180.26577 * 10 9 7 12 12 N 1.31239 * 109.07980 * 359.73954 * 11 10 9 13 13 N 1.37459 * 126.65590 * 179.97438 * 9 7 2 14 14 C 1.46499 * 126.20796 * 0.02562 * 13 9 7 15 15 C 1.53000 * 109.46840 * 269.71565 * 14 13 9 16 16 C 1.53787 * 113.61239 * 272.49433 * 15 14 13 17 17 C 1.53781 * 87.07799 * 220.02294 * 16 15 14 18 18 C 1.53776 * 87.08649 * 25.43327 * 17 16 15 19 19 H 0.97001 * 119.99839 * 0.02562 * 1 2 3 20 20 H 1.08008 * 126.23194 * 359.97438 * 10 9 7 21 21 H 1.08005 * 125.46693 * 179.72385 * 11 10 9 22 22 H 1.09002 * 109.47391 * 149.71234 * 14 13 9 23 23 H 1.09001 * 109.46813 * 29.71291 * 14 13 9 24 24 H 1.08992 * 112.85173 * 43.80013 * 15 14 13 25 25 H 1.08998 * 113.61082 * 334.56508 * 16 15 14 26 26 H 1.08997 * 113.61565 * 105.47270 * 16 15 14 27 27 H 1.09004 * 113.61390 * 270.87961 * 17 16 15 28 28 H 1.09003 * 113.61660 * 139.98542 * 17 16 15 29 29 H 1.08999 * 113.61671 * 220.02331 * 18 17 16 30 30 H 1.09001 * 113.69175 * 89.12786 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.0954 1.6963 -1.2125 5 1 1.2766 2.7464 -0.0006 6 1 3.0954 1.6963 1.2124 7 6 2.0083 -1.2139 0.0005 8 1 3.0884 -1.2140 0.0001 9 6 1.3071 -2.4284 0.0005 10 6 -0.0814 -2.5905 -0.0034 11 6 -0.3432 -3.9525 0.0043 12 7 0.7938 -4.6079 0.0069 13 7 1.8517 -3.6905 0.0005 14 6 3.2799 -4.0167 0.0011 15 6 3.7761 -4.1370 -1.4413 16 6 3.6059 -5.5450 -2.0358 17 6 4.9853 -5.3510 -2.6873 18 6 5.2937 -4.3582 -1.5542 19 1 -0.4850 0.8401 -0.0004 20 1 -0.8166 -1.7992 -0.0066 21 1 -1.3254 -4.4019 0.0079 22 1 3.4364 -4.9628 0.5193 23 1 3.8326 -3.2275 0.5108 24 1 3.4016 -3.3415 -2.0854 25 1 3.5847 -6.3359 -1.2860 26 1 2.7901 -5.6198 -2.7547 27 1 4.9413 -4.8883 -3.6733 28 1 5.6081 -6.2453 -2.6659 29 1 5.8403 -3.4748 -1.8843 30 1 5.7340 -4.8233 -0.6722 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212630325.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:33 Heat of formation + Delta-G solvation = 58.670140 kcal Electronic energy + Delta-G solvation = -13260.105199 eV Core-core repulsion = 11056.270837 eV Total energy + Delta-G solvation = -2203.834362 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.91787 -39.47067 -35.57003 -33.50627 -30.76647 -28.29931 -27.04127 -26.46046 -24.03311 -21.59403 -20.85120 -20.27587 -18.77555 -17.41802 -16.52109 -16.02092 -15.85365 -14.89506 -14.60789 -14.23953 -13.81073 -13.51212 -13.33345 -13.30955 -12.94322 -12.80232 -12.28690 -12.16322 -11.76716 -11.57938 -11.28180 -11.25517 -11.10059 -10.66955 -9.67968 -8.75419 -8.51347 -6.47794 1.28743 1.41012 1.54667 1.79810 2.17301 2.44764 2.57064 3.36375 3.65871 3.79761 3.83977 3.95653 4.31717 4.41455 4.60801 4.69804 4.83288 4.85200 4.95472 5.07358 5.10843 5.13926 5.32718 5.41244 5.55082 5.62015 5.91649 6.09620 6.51787 6.75181 6.86547 7.27921 7.69231 8.40192 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.029897 B = 0.011250 C = 0.008633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.332991 B = 2488.381078 C = 3242.742970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.032 3.968 3 Si 1.001 2.999 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.475 4.475 8 H 0.082 0.918 9 C 0.227 3.773 10 C -0.399 4.399 11 C 0.030 3.970 12 N -0.403 5.403 13 N -0.431 5.431 14 C 0.159 3.841 15 C -0.131 4.131 16 C -0.130 4.130 17 C -0.127 4.127 18 C -0.119 4.119 19 H 0.287 0.713 20 H 0.143 0.857 21 H 0.172 0.828 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.081 0.919 26 H 0.040 0.960 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.219 -2.113 -2.574 9.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.185 4.185 3 Si 0.820 3.180 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.182 1.182 7 C -0.512 4.512 8 H 0.100 0.900 9 C 0.107 3.893 10 C -0.430 4.430 11 C -0.151 4.151 12 N -0.226 5.226 13 N -0.220 5.220 14 C 0.037 3.963 15 C -0.151 4.151 16 C -0.168 4.168 17 C -0.164 4.164 18 C -0.157 4.157 19 H 0.098 0.902 20 H 0.160 0.840 21 H 0.189 0.811 22 H 0.099 0.901 23 H 0.096 0.904 24 H 0.080 0.920 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.640 -3.228 -2.560 10.483 hybrid contribution -0.757 1.456 0.040 1.642 sum 8.883 -1.772 -2.520 9.402 Atomic orbital electron populations 1.69821 1.09060 1.30034 1.35454 1.26831 0.95747 1.04524 0.91392 0.84973 0.78329 0.74571 0.80090 1.18262 1.19157 1.18150 1.18940 0.94601 0.89269 1.48347 0.89968 1.19156 0.92686 0.85211 0.92251 1.22225 0.95690 0.95331 1.29788 1.23517 0.96911 0.94184 1.00524 1.76738 0.94351 1.16993 1.34525 1.48839 1.04835 1.03186 1.65104 1.21392 0.76472 1.01124 0.97266 1.22943 0.98403 0.98159 0.95599 1.22876 0.97908 0.96213 0.99782 1.22752 0.95697 1.00050 0.97887 1.22880 0.92974 1.00047 0.99780 0.90243 0.83967 0.81059 0.90083 0.90368 0.92042 0.90035 0.94072 0.90143 0.89306 0.90550 0.88356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.33 10.30 21.87 0.23 -43.11 16 2 C 0.03 1.59 5.50 85.32 0.47 2.06 16 3 Si 1.00 37.61 29.56 68.60 2.03 39.64 16 4 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 5 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 6 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 7 C -0.48 -25.66 9.02 23.22 0.21 -25.45 16 8 H 0.08 4.12 7.20 -2.91 -0.02 4.09 16 9 C 0.23 12.95 6.75 39.12 0.26 13.22 16 10 C -0.40 -23.19 9.76 22.76 0.22 -22.97 16 11 C 0.03 1.56 11.93 84.89 1.01 2.58 16 12 N -0.40 -21.43 12.54 -57.58 -0.72 -22.16 16 13 N -0.43 -22.30 3.69 -339.37 -1.25 -23.55 16 14 C 0.16 6.46 6.08 86.38 0.53 6.98 16 15 C -0.13 -4.63 3.97 -10.26 -0.04 -4.67 16 16 C -0.13 -4.12 7.63 31.12 0.24 -3.88 16 17 C -0.13 -3.01 8.08 31.12 0.25 -2.75 16 18 C -0.12 -2.98 7.64 31.12 0.24 -2.75 16 19 H 0.29 13.66 8.29 -92.71 -0.77 12.89 16 20 H 0.14 8.55 5.73 -2.91 -0.02 8.53 16 21 H 0.17 7.66 8.06 -2.91 -0.02 7.63 16 22 H 0.08 3.02 7.84 -2.39 -0.02 3.00 16 23 H 0.08 3.05 7.39 -2.39 -0.02 3.04 16 24 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 25 H 0.08 2.50 7.90 -2.39 -0.02 2.49 16 26 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.10 2.12 8.10 -2.39 -0.02 2.10 16 Total: -1.00 -64.63 255.02 4.79 -59.84 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 1.12 Total: 26.96 kcal Atomic # 6 Polarization: -41.02 SS G_CDS: 3.39 Total: -37.63 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -1.75 Total: -88.81 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.64 kcal Total: -64.63 4.79 -59.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212630325.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.514 kcal (2) G-P(sol) polarization free energy of solvation -64.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds