Wall clock time and date at job start Mon Mar 30 2020 02:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 109.47289 * 2 1 4 4 C 1.38347 * 119.97341 * 262.17572 * 3 2 1 5 5 C 1.38779 * 120.59399 * 180.02562 * 4 3 2 6 6 C 1.36532 * 120.53470 * 359.73235 * 5 4 3 7 7 C 1.40692 * 119.92770 * 0.52872 * 6 5 4 8 8 C 1.41157 * 120.28724 * 179.75907 * 7 6 5 9 9 H 1.07997 * 120.00061 * 154.76831 * 8 7 6 10 10 C 1.39939 * 119.99718 * 334.49508 * 8 7 6 11 11 N 1.30856 * 120.00144 * 342.15643 * 10 8 7 12 12 Si 1.86797 * 119.99745 * 162.15693 * 10 8 7 13 13 H 1.48506 * 109.47127 * 89.99586 * 12 10 8 14 14 H 1.48496 * 109.47329 * 209.99815 * 12 10 8 15 15 H 1.48504 * 109.47207 * 329.99987 * 12 10 8 16 16 C 1.38409 * 119.97495 * 82.20008 * 3 2 1 17 17 O 1.35638 * 120.26511 * 359.95752 * 16 3 2 18 18 C 1.42901 * 117.00052 * 91.94408 * 17 16 3 19 19 H 1.09009 * 109.46598 * 55.64224 * 1 2 3 20 20 H 1.08999 * 109.47010 * 175.63787 * 1 2 3 21 21 H 1.08996 * 109.47263 * 295.64540 * 1 2 3 22 22 H 1.08996 * 109.47374 * 239.99048 * 2 1 3 23 23 H 1.09004 * 109.46971 * 119.99775 * 2 1 3 24 24 H 1.08001 * 119.70411 * 0.04790 * 4 3 2 25 25 H 1.07995 * 119.73045 * 180.02562 * 5 4 3 26 26 H 1.08001 * 120.03237 * 180.28006 * 6 5 4 27 27 H 0.97006 * 120.00124 * 179.97438 * 11 10 8 28 28 H 1.09003 * 109.46964 * 302.90206 * 18 17 16 29 29 H 1.09000 * 109.47105 * 62.90417 * 18 17 16 30 30 H 1.09000 * 109.47017 * 182.90474 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.4166 2.0180 -1.1873 5 6 2.8816 3.3255 -1.2021 6 6 2.9625 4.0461 -0.0453 7 6 2.5829 3.4588 1.1755 8 6 2.6682 4.1952 2.3768 9 1 2.0336 3.9404 3.2126 10 6 3.5792 5.2517 2.4865 11 7 4.5765 5.3459 1.6445 12 14 3.3717 6.5277 3.8349 13 1 4.1111 6.0919 5.0468 14 1 3.9086 7.8316 3.3695 15 1 1.9301 6.6738 4.1605 16 6 2.1095 2.1270 1.1879 17 8 1.7336 1.5458 2.3543 18 6 2.7518 0.8831 3.1067 19 1 -0.3633 0.5800 -0.8485 20 1 -0.3633 -1.0247 -0.0782 21 1 -0.3633 0.4448 0.9264 22 1 1.8934 -0.5140 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 2.3537 1.4619 -2.1110 25 1 3.1775 3.7781 -2.1369 26 1 3.3213 5.0645 -0.0668 27 1 5.2078 6.0785 1.7203 28 1 3.2193 0.1164 2.4888 29 1 3.5041 1.6081 3.4172 30 1 2.3087 0.4192 3.9879 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214108223.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:35 Heat of formation + Delta-G solvation = -51.798625 kcal Electronic energy + Delta-G solvation = -13447.548888 eV Core-core repulsion = 11206.631490 eV Total energy + Delta-G solvation = -2240.917398 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.40181 -37.60469 -36.03958 -34.16519 -31.29966 -29.72932 -27.87832 -26.72068 -24.37234 -22.49609 -21.60413 -18.84913 -18.06575 -17.23647 -16.51335 -16.05385 -15.84502 -14.73786 -14.65092 -14.55691 -14.24868 -13.67121 -13.47489 -13.01735 -12.92069 -12.66128 -12.46521 -12.21669 -12.07612 -11.83985 -11.66301 -11.32246 -11.04107 -10.33885 -9.28680 -9.05754 -8.65789 -6.33521 0.87032 1.00726 1.35355 1.46204 1.52498 2.18487 2.67245 3.26138 3.79051 4.17717 4.26639 4.54699 4.59863 4.65547 4.69212 4.80975 4.84406 4.92525 5.03461 5.10986 5.14264 5.32835 5.41038 5.49153 5.60970 5.90024 6.06163 6.17318 6.35324 6.51691 6.82109 6.88815 7.31997 8.28668 Molecular weight = 206.10amu Principal moments of inertia in cm(-1) A = 0.038722 B = 0.011474 C = 0.009625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.936516 B = 2439.677970 C = 2908.393605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.070 4.070 3 C -0.077 4.077 4 C -0.231 4.231 5 C -0.110 4.110 6 C -0.186 4.186 7 C 0.066 3.934 8 C -0.481 4.481 9 H 0.071 0.929 10 C 0.036 3.964 11 N -0.821 5.821 12 Si 0.979 3.021 13 H -0.261 1.261 14 H -0.263 1.263 15 H -0.262 1.262 16 C -0.047 4.047 17 O -0.338 6.338 18 C 0.036 3.964 19 H 0.048 0.952 20 H 0.076 0.924 21 H 0.039 0.961 22 H 0.077 0.923 23 H 0.060 0.940 24 H 0.122 0.878 25 H 0.113 0.887 26 H 0.101 0.899 27 H 0.289 0.711 28 H 0.038 0.962 29 H 0.020 0.980 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.296 -4.862 -0.135 5.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.108 4.108 3 C -0.077 4.077 4 C -0.250 4.250 5 C -0.128 4.128 6 C -0.205 4.205 7 C 0.063 3.937 8 C -0.511 4.511 9 H 0.089 0.911 10 C -0.179 4.179 11 N -0.447 5.447 12 Si 0.799 3.201 13 H -0.186 1.186 14 H -0.187 1.187 15 H -0.186 1.186 16 C -0.091 4.091 17 O -0.255 6.255 18 C -0.058 4.058 19 H 0.068 0.932 20 H 0.095 0.905 21 H 0.059 0.941 22 H 0.096 0.904 23 H 0.079 0.921 24 H 0.140 0.860 25 H 0.131 0.869 26 H 0.119 0.881 27 H 0.100 0.900 28 H 0.056 0.944 29 H 0.039 0.961 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.254 -4.735 -0.112 5.245 hybrid contribution 0.556 0.827 0.507 1.118 sum -1.698 -3.908 0.395 4.279 Atomic orbital electron populations 1.21604 0.94193 1.01933 1.01191 1.20373 0.96811 0.91709 1.01867 1.20071 0.98553 0.96493 0.92600 1.20530 1.11136 0.96458 0.96840 1.20748 0.99564 0.95224 0.97251 1.20926 1.07623 0.99928 0.92034 1.18267 0.89867 0.91385 0.94188 1.19591 1.18733 1.13131 0.99600 0.91131 1.26759 0.92666 0.99190 0.99307 1.69885 1.09774 1.29499 1.35493 0.85257 0.79765 0.77122 0.77922 1.18562 1.18705 1.18572 1.18694 1.13730 0.91653 0.85036 1.85853 1.34533 1.71637 1.33474 1.22880 0.92132 0.95133 0.95700 0.93240 0.90472 0.94132 0.90444 0.92146 0.86005 0.86880 0.88064 0.90003 0.94375 0.96118 0.87637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 9.89 71.98 0.71 -3.43 16 2 C -0.07 -2.47 5.75 29.85 0.17 -2.30 16 3 C -0.08 -3.44 5.14 -19.80 -0.10 -3.54 16 4 C -0.23 -10.09 9.67 22.43 0.22 -9.87 16 5 C -0.11 -5.16 9.97 22.00 0.22 -4.95 16 6 C -0.19 -10.01 8.64 22.47 0.19 -9.82 16 7 C 0.07 3.68 5.57 -21.20 -0.12 3.56 16 8 C -0.48 -26.87 8.71 23.40 0.20 -26.67 16 9 H 0.07 3.96 7.66 -2.91 -0.02 3.93 16 10 C 0.04 1.86 5.13 85.25 0.44 2.29 16 11 N -0.82 -43.31 11.03 21.83 0.24 -43.07 16 12 Si 0.98 39.08 29.60 68.60 2.03 41.11 16 13 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 14 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 15 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 16 C -0.05 -2.39 5.73 23.08 0.13 -2.26 16 17 O -0.34 -16.10 8.99 -89.52 -0.80 -16.91 16 18 C 0.04 1.43 10.83 113.37 1.23 2.66 16 19 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 20 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 21 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.08 2.35 8.02 -2.39 -0.02 2.33 16 23 H 0.06 2.09 6.76 -2.38 -0.02 2.08 16 24 H 0.12 4.49 8.04 -2.91 -0.02 4.47 16 25 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 26 H 0.10 5.66 6.23 -2.91 -0.02 5.64 16 27 H 0.29 13.73 8.30 -92.70 -0.77 12.96 16 28 H 0.04 1.39 7.40 -2.39 -0.02 1.37 16 29 H 0.02 0.88 8.14 -2.39 -0.02 0.87 16 30 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -60.87 257.15 5.88 -54.99 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 1.11 Total: 18.20 kcal Atomic # 6 Polarization: -57.61 SS G_CDS: 3.29 Total: -54.31 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.24 Total: -43.07 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.80 Total: -16.91 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -60.87 5.88 -54.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214108223.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.191 kcal (2) G-P(sol) polarization free energy of solvation -60.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds