Wall clock time and date at job start Mon Mar 30 2020 01:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35640 * 117.00256 * 2 1 4 4 C 1.38454 * 120.26686 * 270.28420 * 3 2 1 5 5 C 1.50695 * 119.97322 * 359.97438 * 4 3 2 6 6 C 1.38305 * 120.05075 * 180.22713 * 4 3 2 7 7 C 1.50699 * 119.70449 * 179.76472 * 6 4 3 8 8 C 1.38830 * 120.59012 * 359.48050 * 6 4 3 9 9 C 1.36488 * 120.53845 * 0.26145 * 8 6 4 10 10 C 1.40727 * 119.92696 * 359.97438 * 9 8 6 11 11 C 1.41159 * 120.28729 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00204 * 204.69802 * 11 10 9 13 13 C 1.39938 * 119.99873 * 24.70347 * 11 10 9 14 14 N 1.30861 * 119.99765 * 17.68163 * 13 11 10 15 15 Si 1.86795 * 119.99946 * 197.68432 * 13 11 10 16 16 H 1.48499 * 109.47101 * 59.99781 * 15 13 11 17 17 H 1.48492 * 109.47150 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47087 * 300.00181 * 15 13 11 19 19 H 1.09004 * 109.46869 * 60.00091 * 1 2 3 20 20 H 1.08996 * 109.46906 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47011 * 300.00095 * 1 2 3 22 22 H 1.09001 * 109.47470 * 270.23462 * 5 4 3 23 23 H 1.08995 * 109.47500 * 30.23761 * 5 4 3 24 24 H 1.09001 * 109.46893 * 150.23857 * 5 4 3 25 25 H 1.09005 * 109.47007 * 269.72141 * 7 6 4 26 26 H 1.08995 * 109.47185 * 149.72283 * 7 6 4 27 27 H 1.08999 * 109.47301 * 29.71962 * 7 6 4 28 28 H 1.07995 * 119.72680 * 180.22956 * 8 6 4 29 29 H 1.07991 * 120.03691 * 180.02562 * 9 8 6 30 30 H 0.96999 * 119.99761 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 6 2.3564 1.8330 -1.1958 5 6 2.0115 1.1692 -2.5040 6 6 2.9886 3.0631 -1.1906 7 6 3.3288 3.7333 -2.4967 8 6 3.3072 3.6886 0.0071 9 6 3.0065 3.0972 1.1999 10 6 2.3677 1.8434 1.2205 11 6 2.0527 1.2251 2.4498 12 1 1.9445 0.1518 2.5023 13 6 1.8804 2.0028 3.6003 14 7 1.6659 3.2894 3.4943 15 14 1.9568 1.2045 5.2873 16 1 3.2877 0.5737 5.4766 17 1 1.7456 2.2370 6.3335 18 1 0.8983 0.1683 5.3930 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 2.8425 0.5397 -2.8222 23 1 1.1194 0.5562 -2.3763 24 1 1.8233 1.9318 -3.2598 25 1 4.3269 3.4290 -2.8121 26 1 3.3028 4.8153 -2.3675 27 1 2.6031 3.4404 -3.2554 28 1 3.7975 4.6508 -0.0051 29 1 3.2577 3.5912 2.1267 30 1 1.5469 3.8286 4.2918 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214108714.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:10 Heat of formation + Delta-G solvation = -50.098430 kcal Electronic energy + Delta-G solvation = -13444.957878 eV Core-core repulsion = 11204.114205 eV Total energy + Delta-G solvation = -2240.843672 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.45142 -37.83894 -36.08988 -33.27596 -31.79328 -29.31181 -28.34408 -26.64243 -25.41213 -22.10130 -21.64022 -18.85980 -17.69714 -17.35077 -16.53192 -16.07221 -15.67311 -14.84097 -14.44305 -14.32742 -14.13840 -13.63249 -13.37310 -13.28596 -12.80463 -12.73803 -12.62354 -12.48973 -12.11603 -11.87044 -11.64760 -11.40532 -10.99522 -10.36804 -9.14703 -9.03246 -8.64975 -6.30606 0.85598 1.00316 1.34694 1.45766 1.51005 2.18157 2.65163 3.24448 3.77202 4.31785 4.41821 4.51398 4.56791 4.66919 4.74154 4.81702 4.84775 4.87359 5.05633 5.12741 5.17793 5.25118 5.38656 5.42742 5.65051 5.89885 6.07291 6.20984 6.36791 6.53400 6.81692 6.89044 7.31668 8.28903 Molecular weight = 206.10amu Principal moments of inertia in cm(-1) A = 0.036787 B = 0.011924 C = 0.009487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.963337 B = 2347.653109 C = 2950.684010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.341 6.341 3 C -0.052 4.052 4 C -0.086 4.086 5 C -0.097 4.097 6 C -0.205 4.205 7 C -0.084 4.084 8 C -0.108 4.108 9 C -0.182 4.182 10 C 0.063 3.937 11 C -0.482 4.482 12 H 0.070 0.930 13 C 0.036 3.964 14 N -0.822 5.822 15 Si 0.980 3.020 16 H -0.262 1.262 17 H -0.264 1.264 18 H -0.260 1.260 19 H 0.041 0.959 20 H 0.105 0.895 21 H 0.019 0.981 22 H 0.068 0.932 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.623 -0.980 -5.010 5.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.258 6.258 3 C -0.096 4.096 4 C -0.086 4.086 5 C -0.153 4.153 6 C -0.207 4.207 7 C -0.141 4.141 8 C -0.127 4.127 9 C -0.202 4.202 10 C 0.060 3.940 11 C -0.512 4.512 12 H 0.088 0.912 13 C -0.179 4.179 14 N -0.448 5.448 15 Si 0.800 3.200 16 H -0.186 1.186 17 H -0.188 1.188 18 H -0.185 1.185 19 H 0.059 0.941 20 H 0.123 0.877 21 H 0.038 0.962 22 H 0.087 0.913 23 H 0.074 0.926 24 H 0.100 0.900 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.129 0.871 29 H 0.121 0.879 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.607 -0.932 -4.880 5.005 hybrid contribution -0.243 0.041 1.171 1.197 sum -0.850 -0.892 -3.709 3.908 Atomic orbital electron populations 1.22894 0.81123 1.02649 0.99173 1.85848 1.19329 1.26333 1.94306 1.18740 1.07794 0.90830 0.92256 1.19957 0.99550 0.94476 0.94636 1.20658 1.01233 0.99994 0.93420 1.19477 1.09130 0.96406 0.95641 1.20532 1.01129 0.99223 0.93193 1.20648 1.00364 0.99082 0.92567 1.20949 1.03826 0.98152 0.97251 1.18234 0.90502 0.92274 0.92972 1.19575 1.43425 0.94903 0.93253 0.91212 1.26756 0.91177 0.95041 1.04947 1.69880 1.33785 1.07853 1.33280 0.85291 0.80017 0.78981 0.75688 1.18634 1.18777 1.18456 0.94073 0.87655 0.96230 0.91338 0.92601 0.90040 0.92000 0.92210 0.91159 0.87100 0.87893 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.44 10.76 113.37 1.22 2.66 16 2 O -0.34 -16.55 8.94 -89.54 -0.80 -17.35 16 3 C -0.05 -2.69 5.73 23.08 0.13 -2.56 16 4 C -0.09 -3.88 5.89 -19.80 -0.12 -3.99 16 5 C -0.10 -3.38 9.37 71.23 0.67 -2.72 16 6 C -0.21 -8.89 5.90 -19.71 -0.12 -9.00 16 7 C -0.08 -2.70 9.59 71.24 0.68 -2.01 16 8 C -0.11 -5.13 9.61 22.00 0.21 -4.92 16 9 C -0.18 -9.91 8.64 22.47 0.19 -9.71 16 10 C 0.06 3.56 5.58 -21.20 -0.12 3.44 16 11 C -0.48 -27.21 8.72 23.40 0.20 -27.00 16 12 H 0.07 3.95 7.65 -2.91 -0.02 3.93 16 13 C 0.04 1.86 5.14 85.25 0.44 2.30 16 14 N -0.82 -43.71 10.96 21.83 0.24 -43.47 16 15 Si 0.98 39.41 29.59 68.60 2.03 41.44 16 16 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 17 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 18 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 19 H 0.04 1.49 7.23 -2.38 -0.02 1.47 16 20 H 0.11 3.35 8.14 -2.39 -0.02 3.34 16 21 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 22 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 23 H 0.06 1.92 6.31 -2.39 -0.02 1.90 16 24 H 0.08 2.39 5.92 -2.39 -0.01 2.38 16 25 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 26 H 0.06 1.75 8.08 -2.39 -0.02 1.73 16 27 H 0.07 1.98 5.90 -2.39 -0.01 1.96 16 28 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 29 H 0.10 5.80 6.16 -2.91 -0.02 5.78 16 30 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 Total: -1.00 -62.24 251.92 6.00 -56.24 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 1.13 Total: 16.67 kcal Atomic # 6 Polarization: -56.92 SS G_CDS: 3.40 Total: -53.52 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.24 Total: -43.47 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.80 Total: -17.35 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Total: -62.24 6.00 -56.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214108714.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.143 kcal (2) G-P(sol) polarization free energy of solvation -62.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds