Wall clock time and date at job start Mon Mar 30 2020 02:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.46808 * 2 1 4 4 O 1.42902 * 109.46465 * 240.00206 * 2 1 3 5 5 C 1.52999 * 109.47056 * 120.00674 * 2 1 3 6 6 H 1.08998 * 109.47438 * 54.75684 * 5 2 1 7 7 C 1.50693 * 109.46980 * 174.76306 * 5 2 1 8 8 H 1.08006 * 120.00244 * 27.88808 * 7 5 2 9 9 C 1.37875 * 120.00236 * 207.89058 * 7 5 2 10 10 N 1.31513 * 119.99954 * 5.77562 * 9 7 5 11 11 Si 1.86801 * 120.00479 * 185.77588 * 9 7 5 12 12 H 1.48502 * 109.47040 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47152 * 120.00055 * 11 9 7 14 14 H 1.48502 * 109.47467 * 240.00092 * 11 9 7 15 15 C 1.50700 * 109.46844 * 294.75607 * 5 2 1 16 16 C 1.38241 * 119.99801 * 120.00265 * 15 5 2 17 17 C 1.38240 * 119.99908 * 179.97438 * 16 15 5 18 18 C 1.38229 * 119.99762 * 0.02562 * 17 16 15 19 19 C 1.38236 * 120.00693 * 0.06354 * 18 17 16 20 20 C 1.38232 * 120.00545 * 299.98549 * 15 5 2 21 21 H 1.09007 * 109.46707 * 299.99549 * 1 2 3 22 22 H 1.08995 * 109.47285 * 59.99801 * 1 2 3 23 23 H 1.09004 * 109.47305 * 179.97438 * 1 2 3 24 24 H 0.96706 * 113.98989 * 174.77565 * 4 2 1 25 25 H 0.97001 * 120.00394 * 180.02562 * 10 9 7 26 26 H 1.08002 * 119.99896 * 359.97438 * 16 15 5 27 27 H 1.07996 * 119.99599 * 179.71888 * 17 16 15 28 28 H 1.07999 * 119.99515 * 179.97438 * 18 17 16 29 29 H 1.07992 * 120.00478 * 180.02562 * 19 18 17 30 30 H 1.08007 * 119.99928 * 359.96976 * 20 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6736 -1.1669 5 6 2.0400 -0.7214 1.2492 6 1 1.6021 -1.7184 1.2973 7 6 3.5414 -0.8347 1.1860 8 1 4.1160 -0.0999 0.6416 9 6 4.1816 -1.8764 1.8232 10 7 3.4783 -2.8327 2.3892 11 14 6.0479 -1.9295 1.8824 12 1 6.5994 -0.7447 1.1772 13 1 6.4987 -1.9170 3.2973 14 1 6.5291 -3.1686 1.2205 15 6 1.6465 0.0599 2.4762 16 6 0.8452 -0.5238 3.4397 17 6 0.4846 0.1928 4.5656 18 6 0.9249 1.4930 4.7277 19 6 1.7246 2.0774 3.7634 20 6 2.0869 1.3601 2.6386 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 2.9668 -0.6427 -1.2742 25 1 3.9286 -3.5654 2.8378 26 1 0.5010 -1.5395 3.3129 27 1 -0.1450 -0.2617 5.3161 28 1 0.6428 2.0529 5.6071 29 1 2.0688 3.0931 3.8902 30 1 2.7136 1.8159 1.8862 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221509666.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:30 Heat of formation + Delta-G solvation = -43.737655 kcal Electronic energy + Delta-G solvation = -13458.293897 eV Core-core repulsion = 11217.726049 eV Total energy + Delta-G solvation = -2240.567848 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.105 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.60462 -36.41411 -33.22251 -31.53436 -30.01815 -29.17247 -26.93654 -23.41773 -21.87266 -21.15996 -19.28807 -16.68981 -16.36016 -15.79859 -14.62456 -14.37230 -13.87129 -13.40814 -13.14780 -12.56076 -12.12220 -11.94998 -11.63545 -11.50480 -11.33596 -11.02395 -10.93902 -10.49333 -10.28310 -9.91183 -9.83277 -9.34679 -8.63478 -8.52483 -8.05706 -7.57984 -6.13054 -4.17989 2.27466 2.34298 3.24314 3.33002 3.34860 4.34136 4.73377 5.14324 5.39171 5.65170 5.70523 5.82473 5.93608 6.10564 6.17079 6.32409 6.41479 6.51611 6.66098 6.78260 6.83666 6.94812 7.05256 7.29956 7.42100 7.51379 7.71013 7.88314 7.99792 8.24187 8.70766 8.90001 9.46313 10.95284 Molecular weight = 206.10amu Principal moments of inertia in cm(-1) A = 0.024058 B = 0.014580 C = 0.010929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.587787 B = 1919.960728 C = 2561.326163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.113 3.887 3 H 0.034 0.966 4 O -0.573 6.573 5 C 0.037 3.963 6 H 0.069 0.931 7 C -0.517 4.517 8 H 0.057 0.943 9 C 0.072 3.928 10 N -0.878 5.878 11 Si 0.890 3.110 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.283 1.283 15 C -0.017 4.017 16 C -0.118 4.118 17 C -0.128 4.128 18 C -0.156 4.156 19 C -0.131 4.131 20 C -0.119 4.119 21 H 0.062 0.938 22 H 0.045 0.955 23 H 0.056 0.944 24 H 0.378 0.622 25 H 0.262 0.738 26 H 0.114 0.886 27 H 0.106 0.894 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.604 5.975 0.768 7.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.054 3.946 3 H 0.052 0.948 4 O -0.379 6.379 5 C 0.019 3.981 6 H 0.087 0.913 7 C -0.554 4.554 8 H 0.075 0.925 9 C -0.132 4.132 10 N -0.514 5.514 11 Si 0.717 3.283 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.209 1.209 15 C -0.017 4.017 16 C -0.136 4.136 17 C -0.146 4.146 18 C -0.174 4.174 19 C -0.149 4.149 20 C -0.137 4.137 21 H 0.081 0.919 22 H 0.064 0.936 23 H 0.075 0.925 24 H 0.226 0.774 25 H 0.072 0.928 26 H 0.132 0.868 27 H 0.124 0.876 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.227 5.680 0.788 7.124 hybrid contribution 1.777 -0.014 0.529 1.854 sum -2.450 5.666 1.317 6.312 Atomic orbital electron populations 1.21774 0.95594 1.01925 1.00655 1.21763 0.92601 0.93706 0.86509 0.94770 1.86258 1.27579 1.79593 1.44509 1.18699 0.96637 0.95796 0.87017 0.91319 1.20894 0.90429 1.10279 1.33811 0.92528 1.24962 0.98261 0.95027 0.94918 1.69932 1.35360 1.10625 1.35475 0.86577 0.85744 0.78044 0.77905 1.19618 1.20963 1.20912 1.20632 0.90490 0.92802 0.97814 1.21100 0.98814 0.99411 0.94306 1.20997 1.00930 0.94817 0.97902 1.20795 1.01498 0.95843 0.99272 1.20970 0.99567 0.99189 0.95194 1.20942 1.00156 0.95067 0.97572 0.91881 0.93625 0.92484 0.77380 0.92787 0.86795 0.87607 0.87759 0.87623 0.87013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.38 37.16 0.35 -2.30 16 2 C 0.11 2.38 3.10 -26.73 -0.08 2.29 16 3 H 0.03 0.69 7.22 -51.93 -0.37 0.32 16 4 O -0.57 -12.33 13.18 -35.23 -0.46 -12.79 16 5 C 0.04 0.89 1.79 -92.93 -0.17 0.72 16 6 H 0.07 1.86 7.17 -51.93 -0.37 1.49 16 7 C -0.52 -13.30 6.86 -34.44 -0.24 -13.54 16 8 H 0.06 1.42 7.72 -52.48 -0.41 1.01 16 9 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 10 N -0.88 -24.69 12.87 55.43 0.71 -23.98 16 11 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 C -0.02 -0.37 3.76 -104.62 -0.39 -0.77 16 16 C -0.12 -2.53 9.67 -39.58 -0.38 -2.91 16 17 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 18 C -0.16 -2.75 10.05 -39.59 -0.40 -3.15 16 19 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 20 C -0.12 -2.45 8.76 -39.58 -0.35 -2.80 16 21 H 0.06 1.12 7.39 -51.93 -0.38 0.74 16 22 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 24 H 0.38 7.44 8.07 45.56 0.37 7.81 16 25 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.11 2.48 7.95 -52.49 -0.42 2.06 16 27 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 28 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 30 H 0.11 2.22 7.55 -52.48 -0.40 1.83 16 LS Contribution 257.67 15.07 3.88 3.88 Total: -1.00 -28.40 257.67 -6.67 -35.07 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -3.23 Total: 8.27 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: -2.55 Total: -26.20 kcal Atomic # 7 Polarization: -24.69 SS G_CDS: 0.71 Total: -23.98 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -0.46 Total: -12.79 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.40 -6.67 -35.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221509666.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.668 kcal (2) G-P(sol) polarization free energy of solvation -28.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds