Wall clock time and date at job start Mon Mar 30 2020 02:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38215 * 119.62025 * 2 1 4 4 C 1.38628 * 119.16579 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.79381 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47190 * 340.00229 * 5 4 3 7 7 N 1.46902 * 109.47298 * 220.00360 * 5 4 3 8 8 C 1.52995 * 109.47196 * 100.00219 * 5 4 3 9 9 C 1.50700 * 109.47313 * 185.00098 * 8 5 4 10 10 H 1.08004 * 119.99679 * 359.97438 * 9 8 5 11 11 C 1.37874 * 120.00393 * 180.02562 * 9 8 5 12 12 N 1.31507 * 120.00576 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99852 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47229 * 89.99896 * 13 11 9 15 15 H 1.48499 * 109.47255 * 210.00080 * 13 11 9 16 16 H 1.48506 * 109.47056 * 329.99974 * 13 11 9 17 17 C 1.38677 * 118.41857 * 0.02562 * 4 3 2 18 18 C 1.38184 * 119.16194 * 0.02562 * 17 4 3 19 19 N 1.31854 * 119.61642 * 179.97438 * 2 1 3 20 20 H 1.08998 * 109.47155 * 270.01939 * 1 2 3 21 21 H 1.09000 * 109.46945 * 30.02424 * 1 2 3 22 22 H 1.09005 * 109.47361 * 150.01716 * 1 2 3 23 23 H 1.08004 * 120.42025 * 359.95606 * 3 2 1 24 24 H 1.00898 * 110.99892 * 300.00438 * 7 5 4 25 25 H 1.00903 * 110.99960 * 63.94859 * 7 5 4 26 26 H 1.09000 * 109.47379 * 305.00070 * 8 5 4 27 27 H 1.08999 * 109.46952 * 65.00129 * 8 5 4 28 28 H 0.96996 * 120.00445 * 179.97438 * 12 11 9 29 29 H 1.07996 * 120.42283 * 179.97438 * 17 4 3 30 30 H 1.07999 * 119.61911 * 180.02562 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2015 0.0000 4 6 3.5763 1.1905 0.0005 5 6 4.3581 2.4789 0.0011 6 1 3.7211 3.2906 -0.3504 7 7 5.5195 2.3474 -0.8888 8 6 4.8363 2.7846 1.4219 9 6 5.5114 4.1318 1.4458 10 1 5.5917 4.7117 0.5382 11 6 6.0274 4.6235 2.6260 12 7 6.6170 5.7988 2.6468 13 14 5.8904 3.6196 4.1953 14 1 7.0821 2.7437 4.3283 15 1 5.8153 4.5340 5.3630 16 1 4.6646 2.7829 4.1423 17 6 4.2266 -0.0343 0.0005 18 6 3.4766 -1.1949 -0.0006 19 7 2.1586 -1.1463 0.0005 20 1 -0.3633 0.0003 1.0276 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3634 -0.8902 -0.5136 23 1 1.6507 2.1373 -0.0007 24 1 6.1259 1.6009 -0.5839 25 1 5.2285 2.2092 -1.8450 26 1 3.9819 2.7944 2.0987 27 1 5.5431 2.0183 1.7401 28 1 6.9796 6.1449 3.4771 29 1 5.3056 -0.0806 0.0005 30 1 3.9754 -2.1528 -0.0002 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260039007.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:53 Heat of formation + Delta-G solvation = -0.514248 kcal Electronic energy + Delta-G solvation = -12941.880032 eV Core-core repulsion = 10735.479242 eV Total energy + Delta-G solvation = -2206.400790 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.32437 -37.64382 -34.68373 -33.59877 -32.35557 -30.85350 -28.57509 -26.34460 -24.17197 -23.30941 -20.95940 -18.95918 -17.66021 -17.39844 -16.56416 -16.27782 -16.11897 -15.41754 -15.03232 -14.67120 -14.22224 -14.16898 -13.53992 -13.34974 -13.08339 -13.00945 -12.57641 -12.20180 -12.07448 -11.81496 -11.34345 -10.73823 -10.60207 -10.38604 -9.87803 -9.47994 -8.22422 -6.23059 0.16597 0.27486 1.34088 1.35893 1.46220 2.37219 2.80204 3.11015 3.42589 3.64255 3.74763 3.92411 4.18789 4.21724 4.36836 4.58448 4.66315 4.77330 4.78470 4.83228 5.08292 5.14604 5.20799 5.24512 5.51842 5.66273 5.80039 6.30288 6.45197 6.73180 6.85983 7.01773 7.38239 8.94649 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.039657 B = 0.008433 C = 0.008058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.892251 B = 3319.566366 C = 3474.188857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.116 3.884 3 C -0.179 4.179 4 C -0.071 4.071 5 C 0.151 3.849 6 H 0.075 0.925 7 N -0.830 5.830 8 C 0.006 3.994 9 C -0.498 4.498 10 H 0.040 0.960 11 C 0.002 3.998 12 N -0.953 5.953 13 Si 0.942 3.058 14 H -0.269 1.269 15 H -0.286 1.286 16 H -0.254 1.254 17 C -0.186 4.186 18 C 0.100 3.900 19 N -0.513 5.513 20 H 0.085 0.915 21 H 0.091 0.909 22 H 0.080 0.920 23 H 0.143 0.857 24 H 0.342 0.658 25 H 0.342 0.658 26 H 0.017 0.983 27 H 0.016 0.984 28 H 0.263 0.737 29 H 0.143 0.857 30 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.443 -14.033 -5.006 17.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.021 4.021 3 C -0.199 4.199 4 C -0.081 4.081 5 C 0.039 3.961 6 H 0.093 0.907 7 N -0.359 5.359 8 C -0.031 4.031 9 C -0.536 4.536 10 H 0.059 0.941 11 C -0.194 4.194 12 N -0.595 5.595 13 Si 0.767 3.233 14 H -0.194 1.194 15 H -0.211 1.211 16 H -0.178 1.178 17 C -0.206 4.206 18 C -0.057 4.057 19 N -0.224 5.224 20 H 0.103 0.897 21 H 0.109 0.891 22 H 0.099 0.901 23 H 0.161 0.839 24 H 0.157 0.843 25 H 0.156 0.844 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.072 0.928 29 H 0.161 0.839 30 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -9.636 -13.931 -4.678 17.574 hybrid contribution 0.544 0.014 0.605 0.814 sum -9.092 -13.917 -4.073 17.116 Atomic orbital electron populations 1.20775 0.86704 1.04346 1.03857 1.21773 0.98520 0.87922 0.93935 1.22104 0.94256 1.00177 1.03385 1.21667 0.95186 0.97348 0.93886 1.20231 0.90096 0.91238 0.94554 0.90662 1.58701 1.18364 1.53613 1.05248 1.19488 0.95539 0.95422 0.92684 1.21243 1.35055 1.02275 0.95065 0.94126 1.25900 0.94993 0.95981 1.02518 1.70056 1.41008 1.20220 1.28205 0.85782 0.79622 0.78881 0.79025 1.19420 1.21148 1.17784 1.22121 1.02206 0.92767 1.03475 1.23109 0.89259 0.99126 0.94164 1.67566 1.10655 1.29811 1.14335 0.89662 0.89064 0.90114 0.83934 0.84323 0.84439 0.96500 0.96567 0.92787 0.83908 0.80116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.89 10.17 71.23 0.72 -1.16 16 2 C 0.12 3.09 6.78 42.55 0.29 3.38 16 3 C -0.18 -5.18 9.41 22.36 0.21 -4.97 16 4 C -0.07 -2.23 4.97 -19.67 -0.10 -2.32 16 5 C 0.15 5.65 2.96 44.17 0.13 5.78 16 6 H 0.08 2.96 8.04 -2.39 -0.02 2.94 16 7 N -0.83 -28.77 8.78 -171.80 -1.51 -30.28 16 8 C 0.01 0.30 3.67 29.85 0.11 0.41 16 9 C -0.50 -28.54 9.39 25.60 0.24 -28.30 16 10 H 0.04 2.60 7.99 -2.91 -0.02 2.57 16 11 C 0.00 0.11 5.47 84.66 0.46 0.57 16 12 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 13 Si 0.94 44.87 27.47 68.60 1.88 46.75 16 14 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 15 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 16 H -0.25 -11.38 6.54 99.48 0.65 -10.72 16 17 C -0.19 -5.12 9.39 22.36 0.21 -4.91 16 18 C 0.10 2.54 11.18 84.67 0.95 3.49 16 19 N -0.51 -14.45 10.27 -183.90 -1.89 -16.34 16 20 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 21 H 0.09 1.39 8.08 -2.39 -0.02 1.37 16 22 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 23 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 24 H 0.34 10.80 7.44 -89.70 -0.67 10.13 16 25 H 0.34 9.88 9.06 -89.69 -0.81 9.07 16 26 H 0.02 0.78 7.20 -2.39 -0.02 0.77 16 27 H 0.02 0.73 7.57 -2.39 -0.02 0.71 16 28 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 29 H 0.14 3.49 6.78 -2.91 -0.02 3.47 16 30 H 0.18 3.35 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -68.90 257.51 1.62 -67.28 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -0.39 Total: 20.73 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: 3.23 Total: -28.02 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -3.10 Total: -106.74 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.75 kcal Total: -68.90 1.62 -67.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260039007.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.767 kcal (2) G-P(sol) polarization free energy of solvation -68.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds