Wall clock time and date at job start Mon Mar 30 2020 02:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.68208 * 2 1 4 4 C 1.53374 * 109.71454 * 120.54605 * 2 1 3 5 5 C 1.53094 * 109.44743 * 169.51704 * 4 2 1 6 6 C 1.53311 * 109.57634 * 289.56300 * 5 4 2 7 7 C 1.51082 * 108.40764 * 50.31625 * 6 5 4 8 8 O 1.33871 * 127.32425 * 163.13346 * 7 6 5 9 9 C 1.35248 * 109.39587 * 180.14431 * 8 7 6 10 10 C 1.39749 * 126.18199 * 179.97438 * 9 8 7 11 11 H 1.07991 * 120.00522 * 179.97438 * 10 9 8 12 12 C 1.40159 * 119.99497 * 359.97438 * 10 9 8 13 13 N 1.30812 * 119.99935 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00010 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47192 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47271 * 120.00318 * 14 12 10 17 17 H 1.48504 * 109.47032 * 239.99664 * 14 12 10 18 18 C 1.39752 * 107.64911 * 359.93917 * 9 8 7 19 19 C 1.36168 * 123.67378 * 343.18888 * 7 6 5 20 20 H 1.09008 * 109.47208 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47547 * 299.99884 * 1 2 3 22 22 H 1.09003 * 109.46966 * 60.00381 * 1 2 3 23 23 H 1.09001 * 109.47648 * 289.50851 * 4 2 1 24 24 H 1.09000 * 109.47780 * 49.52575 * 4 2 1 25 25 H 1.09000 * 109.45565 * 169.53015 * 5 4 2 26 26 H 1.08994 * 109.44910 * 49.59489 * 5 4 2 27 27 H 1.08994 * 109.67769 * 290.58370 * 6 5 4 28 28 H 1.09004 * 109.67409 * 170.04533 * 6 5 4 29 29 H 0.97000 * 119.99387 * 179.97438 * 13 12 10 30 30 H 1.07998 * 126.84692 * 180.02562 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 6 2.0474 -0.7338 1.2435 5 6 3.5556 -0.9605 1.1108 6 6 3.8238 -2.0116 0.0274 7 6 3.0600 -1.6205 -1.2161 8 8 3.2521 -2.0711 -2.4620 9 6 2.3681 -1.4772 -3.2957 10 6 2.2604 -1.6915 -4.6724 11 1 1.5139 -1.1610 -5.2448 12 6 3.1212 -2.5950 -5.3104 13 7 4.0258 -3.2372 -4.6173 14 14 2.9769 -2.8820 -7.1506 15 1 1.8828 -2.0407 -7.6985 16 1 4.2575 -2.5208 -7.8100 17 1 2.6753 -4.3135 -7.4061 18 6 1.5812 -0.6112 -2.5317 19 6 2.0378 -0.7210 -1.2227 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8469 -0.1323 2.1301 24 1 1.5420 -1.6953 1.3346 25 1 3.9553 -1.3102 2.0627 26 1 4.0406 -0.0239 0.8360 27 1 3.4870 -2.9889 0.3728 28 1 4.8907 -2.0473 -0.1932 29 1 4.6213 -3.8628 -5.0588 30 1 0.7783 0.0177 -2.8870 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260414060.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:45 Heat of formation + Delta-G solvation = -45.164289 kcal Electronic energy + Delta-G solvation = -13405.054121 eV Core-core repulsion = 11164.424409 eV Total energy + Delta-G solvation = -2240.629712 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.45532 -38.16564 -35.54643 -33.82716 -31.83341 -30.57283 -27.91707 -26.17508 -22.89696 -22.71693 -21.34701 -20.19775 -18.57560 -17.14061 -16.46269 -16.32861 -15.49963 -15.16534 -14.89014 -14.07617 -13.83728 -13.72032 -13.43811 -13.06712 -13.01061 -12.92179 -12.49280 -12.24784 -12.23999 -11.83040 -11.68810 -11.33233 -11.31771 -11.01540 -9.88842 -8.96585 -8.75736 -6.39579 1.17716 1.34956 1.53800 1.68253 2.16102 2.16478 2.96967 3.20245 3.99068 4.03950 4.14570 4.33660 4.48966 4.63444 4.71987 4.82070 4.93738 4.98447 5.03712 5.06485 5.10173 5.12960 5.25347 5.35920 5.41797 5.57403 5.66000 5.78640 6.06259 6.39974 6.67505 6.75422 7.32444 8.27394 Molecular weight = 206.10amu Principal moments of inertia in cm(-1) A = 0.055019 B = 0.009284 C = 0.008119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.794026 B = 3015.208257 C = 3447.667887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.025 4.025 3 H 0.071 0.929 4 C -0.106 4.106 5 C -0.103 4.103 6 C -0.015 4.015 7 C -0.188 4.188 8 O -0.184 6.184 9 C 0.161 3.839 10 C -0.482 4.482 11 H 0.106 0.894 12 C 0.019 3.981 13 N -0.822 5.822 14 Si 1.006 2.994 15 H -0.250 1.250 16 H -0.261 1.261 17 H -0.261 1.261 18 C -0.404 4.404 19 C -0.132 4.132 20 H 0.040 0.960 21 H 0.081 0.919 22 H 0.041 0.959 23 H 0.095 0.905 24 H 0.056 0.944 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.291 0.709 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.656 2.486 6.862 7.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.043 4.043 3 H 0.089 0.911 4 C -0.143 4.143 5 C -0.140 4.140 6 C -0.052 4.052 7 C -0.236 4.236 8 O -0.082 6.082 9 C 0.109 3.891 10 C -0.512 4.512 11 H 0.124 0.876 12 C -0.197 4.197 13 N -0.449 5.449 14 Si 0.824 3.176 15 H -0.174 1.174 16 H -0.186 1.186 17 H -0.186 1.186 18 C -0.425 4.425 19 C -0.133 4.133 20 H 0.060 0.940 21 H 0.100 0.900 22 H 0.060 0.940 23 H 0.113 0.887 24 H 0.075 0.925 25 H 0.118 0.882 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.261 2.130 6.847 7.281 hybrid contribution -0.055 -0.180 -1.146 1.162 sum -1.317 1.950 5.701 6.167 Atomic orbital electron populations 1.21648 0.94051 1.01146 1.01670 1.19757 0.95955 0.97620 0.90955 0.91111 1.21636 0.95336 1.00488 0.96867 1.21512 0.96917 0.97923 0.97684 1.19935 0.97397 0.99392 0.88474 1.22752 1.06729 1.07816 0.86290 1.84220 1.50469 1.56786 1.16739 1.20246 0.87010 0.90605 0.91209 1.19136 1.18200 1.23972 0.89893 0.87562 1.27213 0.92501 0.92933 1.07053 1.69883 1.14667 1.19807 1.40559 0.84806 0.79798 0.79306 0.73655 1.17356 1.18567 1.18587 1.21149 1.11859 1.15309 0.94194 1.19996 0.97863 1.00279 0.95202 0.94049 0.89980 0.94026 0.88689 0.92515 0.88155 0.92262 0.91679 0.92272 0.89810 0.86915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 8.95 71.98 0.64 -3.47 16 2 C -0.02 -0.89 3.08 -11.40 -0.04 -0.93 16 3 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 4 C -0.11 -3.10 5.22 30.75 0.16 -2.94 16 5 C -0.10 -3.07 5.88 30.73 0.18 -2.89 16 6 C -0.01 -0.58 6.30 30.07 0.19 -0.39 16 7 C -0.19 -9.80 7.23 25.32 0.18 -9.62 16 8 O -0.18 -11.37 8.96 -7.97 -0.07 -11.44 16 9 C 0.16 9.87 6.80 23.00 0.16 10.03 16 10 C -0.48 -28.05 9.32 23.10 0.22 -27.83 16 11 H 0.11 5.78 7.85 -2.91 -0.02 5.76 16 12 C 0.02 1.00 5.50 85.31 0.47 1.47 16 13 N -0.82 -46.69 12.01 21.87 0.26 -46.43 16 14 Si 1.01 39.41 29.56 68.60 2.03 41.44 16 15 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 16 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 17 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 18 C -0.40 -22.50 10.36 22.84 0.24 -22.26 16 19 C -0.13 -6.52 5.43 -20.13 -0.11 -6.63 16 20 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 21 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 22 H 0.04 1.41 7.80 -2.39 -0.02 1.39 16 23 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.06 1.72 8.09 -2.39 -0.02 1.70 16 25 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.06 1.80 8.11 -2.39 -0.02 1.78 16 27 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 29 H 0.29 14.70 8.30 -92.71 -0.77 13.93 16 30 H 0.11 5.95 7.92 -2.91 -0.02 5.92 16 Total: -1.00 -68.94 250.98 5.62 -63.32 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 1.11 Total: 18.57 kcal Atomic # 6 Polarization: -67.76 SS G_CDS: 2.29 Total: -65.46 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.26 Total: -46.43 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -0.07 Total: -11.44 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Total: -68.94 5.62 -63.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414060.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.152 kcal (2) G-P(sol) polarization free energy of solvation -68.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds