Wall clock time and date at job start Mon Mar 30 2020 02:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50701 * 109.46925 * 2 1 4 4 C 1.38285 * 119.94972 * 89.99734 * 3 2 1 5 5 C 1.38124 * 120.05712 * 179.97438 * 4 3 2 6 6 C 1.38747 * 119.94427 * 359.97438 * 5 4 3 7 7 O 1.35901 * 120.05476 * 179.97438 * 6 5 4 8 8 C 1.38709 * 119.88970 * 0.02562 * 6 5 4 9 9 C 1.50707 * 120.03015 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47014 * 280.00530 * 9 8 6 11 11 H 1.08004 * 120.00546 * 0.27454 * 10 9 8 12 12 C 1.37885 * 119.99721 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00035 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99853 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47093 * 60.00328 * 14 12 10 16 16 H 1.48495 * 109.47002 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47239 * 300.00048 * 14 12 10 18 18 C 1.38170 * 119.94691 * 0.25581 * 8 6 5 19 19 H 1.08998 * 109.46900 * 60.00170 * 1 2 3 20 20 H 1.08999 * 109.46537 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47187 * 300.00465 * 1 2 3 22 22 H 1.08996 * 109.47552 * 239.99760 * 2 1 3 23 23 H 1.09000 * 109.47118 * 119.99335 * 2 1 3 24 24 H 1.08003 * 119.96632 * 359.97438 * 4 3 2 25 25 H 1.08002 * 120.02513 * 179.97438 * 5 4 3 26 26 H 0.96693 * 114.00381 * 270.02304 * 7 6 5 27 27 H 1.08992 * 109.47349 * 160.00389 * 9 8 6 28 28 H 1.08997 * 109.46649 * 40.00073 * 9 8 6 29 29 H 0.97000 * 119.99706 * 179.97438 * 13 12 10 30 30 H 1.07992 * 119.97415 * 179.74407 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2624 2.0718 1.1982 5 6 2.7233 3.3738 1.2008 6 6 2.9559 4.0285 -0.0002 7 8 3.4089 5.3099 -0.0003 8 6 2.7244 3.3735 -1.2007 9 6 2.9755 4.0818 -2.5071 10 6 1.8116 4.9865 -2.8197 11 1 0.9757 5.0463 -2.1383 12 6 1.8164 5.7426 -3.9728 13 7 2.8366 5.6738 -4.7999 14 14 0.3733 6.8634 -4.3608 15 1 0.2189 7.8653 -3.2755 16 1 0.6208 7.5614 -5.6478 17 1 -0.8673 6.0542 -4.4676 18 6 2.2578 2.0729 -1.1980 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.8935 -0.5138 -0.8899 23 1 1.8934 -0.5137 0.8900 24 1 2.0815 1.5615 2.1327 25 1 2.9024 3.8819 2.1369 26 1 2.7072 5.9751 -0.0007 27 1 3.0881 3.3463 -3.3034 28 1 3.8863 4.6754 -2.4292 29 1 2.8398 6.2055 -5.6112 30 1 2.0735 1.5639 -2.1325 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260539744.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:30 Heat of formation + Delta-G solvation = -44.601632 kcal Electronic energy + Delta-G solvation = -12985.402616 eV Core-core repulsion = 10744.797303 eV Total energy + Delta-G solvation = -2240.605313 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.105 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.24780 -36.36546 -33.67460 -32.75397 -31.13956 -28.35898 -26.86526 -23.38709 -23.22762 -21.36440 -19.60240 -17.53505 -16.26865 -15.44085 -15.20509 -14.59978 -14.24513 -13.57890 -13.25283 -13.11279 -12.51636 -12.19790 -11.93989 -11.53556 -11.30404 -11.10074 -10.90677 -10.71286 -10.67847 -10.40838 -9.97279 -9.51752 -9.28304 -8.42365 -8.08953 -7.62217 -6.04153 -4.08628 1.88309 2.06868 3.29635 3.34733 3.36697 4.24265 4.44710 5.05779 5.12381 5.20584 5.30324 5.53740 5.58015 5.65559 5.81740 5.98621 6.00124 6.10576 6.36187 6.36961 6.56240 6.71595 6.92803 7.12051 7.20608 7.48743 7.61935 7.84123 7.91167 8.30715 8.48539 8.95707 9.54578 11.05758 Molecular weight = 206.10amu Principal moments of inertia in cm(-1) A = 0.033369 B = 0.009258 C = 0.008220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.895629 B = 3023.586780 C = 3405.678126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 C -0.099 4.099 4 C -0.132 4.132 5 C -0.149 4.149 6 C 0.097 3.903 7 O -0.494 6.494 8 C -0.057 4.057 9 C 0.052 3.948 10 C -0.512 4.512 11 H 0.053 0.947 12 C 0.060 3.940 13 N -0.892 5.892 14 Si 0.895 3.105 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.277 1.277 18 C -0.110 4.110 19 H 0.058 0.942 20 H 0.051 0.949 21 H 0.053 0.947 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.112 0.888 25 H 0.116 0.884 26 H 0.387 0.613 27 H 0.026 0.974 28 H 0.037 0.963 29 H 0.263 0.737 30 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.096 -7.139 9.424 12.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.099 4.099 4 C -0.150 4.150 5 C -0.168 4.168 6 C 0.052 3.948 7 O -0.304 6.304 8 C -0.058 4.058 9 C 0.015 3.985 10 C -0.550 4.550 11 H 0.071 0.929 12 C -0.142 4.142 13 N -0.530 5.530 14 Si 0.722 3.278 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.129 4.129 19 H 0.077 0.923 20 H 0.070 0.930 21 H 0.072 0.928 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.130 0.870 25 H 0.134 0.866 26 H 0.243 0.757 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.471 -7.330 9.246 12.055 hybrid contribution -1.236 0.969 -0.280 1.595 sum -3.706 -6.361 8.967 11.602 Atomic orbital electron populations 1.21750 0.95187 1.01022 1.02377 1.20459 0.95883 0.93201 1.02111 1.19797 1.00771 0.95953 0.93341 1.20582 1.02825 0.94667 0.96941 1.21275 1.02171 0.96011 0.97344 1.18350 0.98827 0.85987 0.91586 1.84692 1.35955 1.13363 1.96352 1.21056 0.93499 0.93832 0.97391 1.18248 0.97965 0.95008 0.87262 1.20936 1.03716 1.24280 1.06097 0.92868 1.25002 0.96042 0.96940 0.96206 1.69949 1.30051 1.40946 1.12070 0.86619 0.82732 0.80778 0.77648 1.20197 1.21206 1.20248 1.20878 1.00441 0.94480 0.97056 0.92288 0.92959 0.92807 0.91355 0.91713 0.86963 0.86588 0.75728 0.95596 0.94504 0.92767 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.90 37.16 0.37 -1.40 16 2 C -0.08 -1.04 6.06 -27.88 -0.17 -1.21 16 3 C -0.10 -1.65 5.14 -104.60 -0.54 -2.18 16 4 C -0.13 -2.13 9.69 -39.61 -0.38 -2.51 16 5 C -0.15 -2.62 9.99 -39.44 -0.39 -3.02 16 6 C 0.10 2.01 6.67 -39.22 -0.26 1.75 16 7 O -0.49 -10.17 12.74 -19.43 -0.25 -10.42 16 8 C -0.06 -1.29 5.09 -104.47 -0.53 -1.82 16 9 C 0.05 1.37 4.77 -29.03 -0.14 1.23 16 10 C -0.51 -14.23 9.09 -34.44 -0.31 -14.54 16 11 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 14 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 18 C -0.11 -2.18 9.32 -39.60 -0.37 -2.55 16 19 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 20 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 23 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 24 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 25 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 26 H 0.39 6.72 9.06 45.56 0.41 7.13 16 27 H 0.03 0.71 8.01 -51.93 -0.42 0.30 16 28 H 0.04 1.06 7.85 -51.93 -0.41 0.65 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.12 2.27 8.04 -52.49 -0.42 1.85 16 LS Contribution 263.77 15.07 3.97 3.97 Total: -1.00 -30.52 263.77 -6.71 -37.24 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -3.33 Total: 3.29 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -2.83 Total: -24.66 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 0.74 Total: -25.75 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -0.25 Total: -10.42 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.52 -6.71 -37.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260539744.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.366 kcal (2) G-P(sol) polarization free energy of solvation -30.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds