Wall clock time and date at job start Mon Mar 30 2020 02:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50701 * 109.46925 * 2 1 4 4 C 1.38285 * 119.94972 * 89.99734 * 3 2 1 5 5 C 1.38124 * 120.05712 * 179.97438 * 4 3 2 6 6 C 1.38747 * 119.94427 * 359.97438 * 5 4 3 7 7 O 1.35901 * 120.05476 * 179.97438 * 6 5 4 8 8 C 1.38709 * 119.88970 * 0.02562 * 6 5 4 9 9 C 1.50707 * 120.03015 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47014 * 280.00530 * 9 8 6 11 11 H 1.08004 * 120.00546 * 0.27454 * 10 9 8 12 12 C 1.37885 * 119.99721 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00035 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99853 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47093 * 60.00328 * 14 12 10 16 16 H 1.48495 * 109.47002 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47239 * 300.00048 * 14 12 10 18 18 C 1.38170 * 119.94691 * 0.25581 * 8 6 5 19 19 H 1.08998 * 109.46900 * 60.00170 * 1 2 3 20 20 H 1.08999 * 109.46537 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47187 * 300.00465 * 1 2 3 22 22 H 1.08996 * 109.47552 * 239.99760 * 2 1 3 23 23 H 1.09000 * 109.47118 * 119.99335 * 2 1 3 24 24 H 1.08003 * 119.96632 * 359.97438 * 4 3 2 25 25 H 1.08002 * 120.02513 * 179.97438 * 5 4 3 26 26 H 0.96693 * 114.00381 * 270.02304 * 7 6 5 27 27 H 1.08992 * 109.47349 * 160.00389 * 9 8 6 28 28 H 1.08997 * 109.46649 * 40.00073 * 9 8 6 29 29 H 0.97000 * 119.99706 * 179.97438 * 13 12 10 30 30 H 1.07992 * 119.97415 * 179.74407 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2624 2.0718 1.1982 5 6 2.7233 3.3738 1.2008 6 6 2.9559 4.0285 -0.0002 7 8 3.4089 5.3099 -0.0003 8 6 2.7244 3.3735 -1.2007 9 6 2.9755 4.0818 -2.5071 10 6 1.8116 4.9865 -2.8197 11 1 0.9757 5.0463 -2.1383 12 6 1.8164 5.7426 -3.9728 13 7 2.8366 5.6738 -4.7999 14 14 0.3733 6.8634 -4.3608 15 1 0.2189 7.8653 -3.2755 16 1 0.6208 7.5614 -5.6478 17 1 -0.8673 6.0542 -4.4676 18 6 2.2578 2.0729 -1.1980 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.8935 -0.5138 -0.8899 23 1 1.8934 -0.5137 0.8900 24 1 2.0815 1.5615 2.1327 25 1 2.9024 3.8819 2.1369 26 1 2.7072 5.9751 -0.0007 27 1 3.0881 3.3463 -3.3034 28 1 3.8863 4.6754 -2.4292 29 1 2.8398 6.2055 -5.6112 30 1 2.0735 1.5639 -2.1325 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260539744.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:30 Heat of formation + Delta-G solvation = -63.986588 kcal Electronic energy + Delta-G solvation = -12986.243210 eV Core-core repulsion = 10744.797303 eV Total energy + Delta-G solvation = -2241.445908 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.74048 -37.82778 -35.59088 -34.17888 -32.86871 -29.82324 -28.63761 -25.29055 -24.48522 -22.84543 -21.09944 -19.12563 -18.40757 -16.89221 -16.76350 -16.40109 -15.71288 -14.75135 -14.66348 -14.50765 -14.19597 -13.94209 -13.44409 -13.16916 -12.94149 -12.65832 -12.54940 -12.37160 -12.11884 -11.74614 -11.63657 -11.52040 -10.97880 -10.61291 -9.60190 -9.14811 -8.20473 -6.34874 0.43506 0.58225 1.38774 1.41724 1.49969 2.38222 2.82600 3.10049 3.59594 3.96460 4.03143 4.18840 4.40992 4.53443 4.60116 4.74321 4.76196 5.09499 5.12302 5.13344 5.19906 5.28742 5.38505 5.43985 5.53766 5.70849 5.79674 5.95457 6.07816 6.18145 6.77296 6.98980 7.33636 8.89207 Molecular weight = 206.10amu Principal moments of inertia in cm(-1) A = 0.033369 B = 0.009258 C = 0.008220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.895629 B = 3023.586780 C = 3405.678126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.078 4.078 3 C -0.091 4.091 4 C -0.118 4.118 5 C -0.142 4.142 6 C 0.075 3.925 7 O -0.509 6.509 8 C -0.096 4.096 9 C 0.065 3.935 10 C -0.524 4.524 11 H 0.056 0.944 12 C 0.003 3.997 13 N -0.932 5.932 14 Si 0.968 3.032 15 H -0.263 1.263 16 H -0.283 1.283 17 H -0.268 1.268 18 C -0.125 4.125 19 H 0.038 0.962 20 H 0.076 0.924 21 H 0.058 0.942 22 H 0.070 0.930 23 H 0.094 0.906 24 H 0.157 0.843 25 H 0.146 0.854 26 H 0.396 0.604 27 H -0.004 1.004 28 H -0.001 1.001 29 H 0.265 0.735 30 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.771 -8.120 11.709 15.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.091 4.091 4 C -0.136 4.136 5 C -0.161 4.161 6 C 0.031 3.969 7 O -0.320 6.320 8 C -0.096 4.096 9 C 0.028 3.972 10 C -0.561 4.561 11 H 0.074 0.926 12 C -0.195 4.195 13 N -0.572 5.572 14 Si 0.792 3.208 15 H -0.188 1.188 16 H -0.208 1.208 17 H -0.193 1.193 18 C -0.143 4.143 19 H 0.057 0.943 20 H 0.095 0.905 21 H 0.078 0.922 22 H 0.088 0.912 23 H 0.112 0.888 24 H 0.175 0.825 25 H 0.163 0.837 26 H 0.253 0.747 27 H 0.015 0.985 28 H 0.017 0.983 29 H 0.074 0.926 30 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.151 -8.318 11.547 14.824 hybrid contribution -0.684 1.185 -0.931 1.655 sum -4.835 -7.133 10.616 13.673 Atomic orbital electron populations 1.21738 0.94257 1.02479 1.01663 1.20560 0.96536 0.90744 1.03699 1.20194 0.99019 0.97626 0.92240 1.21108 1.00210 0.93910 0.98344 1.21566 1.00916 0.96612 0.96973 1.18581 1.00044 0.86068 0.92249 1.84656 1.36962 1.13975 1.96438 1.20827 0.97258 0.95361 0.96162 1.17910 0.96198 0.93988 0.89121 1.21238 1.04074 1.24508 1.06314 0.92559 1.25982 0.99030 0.98572 0.95925 1.70097 1.32346 1.42089 1.12640 0.85454 0.78907 0.78700 0.77713 1.18781 1.20794 1.19327 1.20921 1.01098 0.93766 0.98504 0.94290 0.90484 0.92250 0.91179 0.88800 0.82531 0.83656 0.74726 0.98550 0.98321 0.92611 0.87074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.90 71.98 0.71 -2.30 16 2 C -0.08 -1.77 6.06 29.85 0.18 -1.59 16 3 C -0.09 -2.81 5.14 -19.85 -0.10 -2.91 16 4 C -0.12 -3.32 9.69 22.25 0.22 -3.11 16 5 C -0.14 -4.62 9.99 22.36 0.22 -4.40 16 6 C 0.07 3.12 6.67 22.50 0.15 3.27 16 7 O -0.51 -21.45 12.74 -92.44 -1.18 -22.63 16 8 C -0.10 -4.46 5.09 -19.77 -0.10 -4.56 16 9 C 0.06 3.65 4.77 29.10 0.14 3.79 16 10 C -0.52 -30.18 9.09 25.60 0.23 -29.94 16 11 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 12 C 0.00 0.17 5.46 84.66 0.46 0.63 16 13 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 14 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 15 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 18 C -0.12 -4.99 9.32 22.26 0.21 -4.78 16 19 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 20 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 21 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 22 H 0.07 1.58 8.09 -2.39 -0.02 1.56 16 23 H 0.09 1.64 8.08 -2.39 -0.02 1.62 16 24 H 0.16 3.11 8.06 -2.91 -0.02 3.08 16 25 H 0.15 3.84 8.06 -2.91 -0.02 3.81 16 26 H 0.40 14.14 9.06 -74.06 -0.67 13.47 16 27 H 0.00 -0.23 8.01 -2.39 -0.02 -0.25 16 28 H 0.00 -0.09 7.85 -2.39 -0.02 -0.11 16 29 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 30 H 0.11 4.45 8.04 -2.91 -0.02 4.43 16 Total: -1.00 -68.48 263.77 3.91 -64.57 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.45 Total: 14.82 kcal Atomic # 6 Polarization: -48.22 SS G_CDS: 2.32 Total: -45.90 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.28 Total: -57.18 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -1.18 Total: -22.63 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -68.48 3.91 -64.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260539744.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.583 kcal (2) G-P(sol) polarization free energy of solvation -68.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds