Wall clock time and date at job start Mon Mar 30 2020 02:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30692 * 1 3 3 Si 1.86803 * 119.99707 * 2 1 4 4 H 1.48499 * 109.47098 * 90.00153 * 3 2 1 5 5 H 1.48503 * 109.46681 * 209.99598 * 3 2 1 6 6 H 1.48495 * 109.47229 * 329.99451 * 3 2 1 7 7 C 1.40237 * 120.00088 * 180.26930 * 2 1 3 8 8 H 1.07998 * 120.00045 * 11.62761 * 7 2 1 9 9 C 1.39999 * 119.99835 * 191.61734 * 7 2 1 10 10 N 1.32977 * 125.96498 * 8.04659 * 9 7 2 11 11 C 1.32754 * 109.22499 * 179.82494 * 10 9 7 12 12 C 1.36214 * 108.62194 * 0.43321 * 11 10 9 13 13 N 1.36422 * 107.19266 * 359.73874 * 12 11 10 14 14 C 1.46496 * 126.56024 * 179.97438 * 13 12 11 15 15 C 1.54265 * 110.03341 * 57.18868 * 14 13 12 16 16 C 1.54893 * 104.19871 * 217.10867 * 15 14 13 17 17 C 1.54886 * 102.74707 * 37.93955 * 16 15 14 18 18 C 1.53875 * 110.03256 * 300.02537 * 14 13 12 19 19 H 0.96995 * 119.99946 * 174.73819 * 1 2 3 20 20 H 1.08009 * 125.69175 * 180.13819 * 11 10 9 21 21 H 1.08002 * 126.40885 * 179.71429 * 12 11 10 22 22 H 1.08995 * 110.01998 * 178.63437 * 14 13 12 23 23 H 1.09005 * 110.48665 * 335.78814 * 15 14 13 24 24 H 1.09002 * 110.48700 * 98.42534 * 15 14 13 25 25 H 1.08998 * 110.75286 * 279.62298 * 16 15 14 26 26 H 1.08999 * 110.91064 * 156.33347 * 16 15 14 27 27 H 1.08996 * 110.48571 * 203.38114 * 17 16 15 28 28 H 1.09004 * 110.59832 * 80.79209 * 17 16 15 29 29 H 1.09005 * 110.03442 * 238.56651 * 18 14 13 30 30 H 1.09002 * 110.03063 * 359.97438 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.4884 2.0465 1.4001 5 1 3.5385 1.4402 -0.7000 6 1 1.4384 2.6526 -0.7001 7 6 2.0081 -1.2145 -0.0057 8 1 1.4848 -2.1393 -0.1986 9 6 3.3866 -1.2280 0.2384 10 7 4.1198 -0.1917 0.6343 11 6 5.3836 -0.5757 0.7673 12 6 5.4741 -1.8947 0.4397 13 7 4.2199 -2.3141 0.1049 14 6 3.8343 -3.6631 -0.3167 15 6 4.2324 -4.6887 0.7647 16 6 4.6892 -5.9310 -0.0397 17 6 5.4313 -5.3034 -1.2457 18 6 4.5967 -4.0539 -1.5949 19 1 -0.4850 -0.8365 -0.0770 20 1 6.2041 0.0540 1.0785 21 1 6.3712 -2.4961 0.4437 22 1 2.7599 -3.7054 -0.4951 23 1 5.0523 -4.3045 1.3716 24 1 3.3751 -4.9342 1.3916 25 1 3.8298 -6.5117 -0.3747 26 1 5.3652 -6.5497 0.5505 27 1 5.4490 -5.9974 -2.0859 28 1 6.4456 -5.0185 -0.9658 29 1 3.8921 -4.2868 -2.3934 30 1 5.2532 -3.2397 -1.9018 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261214866.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:15 Heat of formation + Delta-G solvation = 30.549063 kcal Electronic energy + Delta-G solvation = -13510.050090 eV Core-core repulsion = 11304.996307 eV Total energy + Delta-G solvation = -2205.053783 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.39738 -37.46090 -33.43641 -31.74539 -29.11967 -28.56226 -26.97641 -24.50756 -21.11277 -20.55608 -20.06719 -18.49162 -17.56815 -16.20568 -15.34659 -14.47554 -13.83458 -13.42812 -13.31790 -13.12474 -12.50534 -12.39329 -11.65590 -11.42875 -11.29237 -11.02393 -10.97675 -10.65379 -10.54505 -10.39611 -10.07542 -9.51673 -8.96237 -8.26484 -7.78480 -7.36078 -7.09325 -4.45091 3.30775 3.69085 3.81834 4.07458 4.18369 4.48783 4.58373 4.74543 4.78792 5.04996 5.43855 5.55090 5.62595 5.68806 5.70490 5.74064 5.94710 5.97606 6.14035 6.14848 6.28363 6.39608 6.41719 6.51854 6.93056 7.30721 7.67082 7.87427 8.10886 8.43819 8.80063 9.03357 9.76726 10.27714 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.044714 B = 0.011005 C = 0.009623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.057519 B = 2543.705284 C = 2908.861623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.064 3.936 3 Si 1.122 2.878 4 H -0.285 1.285 5 H -0.262 1.262 6 H -0.324 1.324 7 C -0.515 4.515 8 H 0.074 0.926 9 C 0.372 3.628 10 N -0.594 5.594 11 C -0.003 4.003 12 C -0.155 4.155 13 N -0.495 5.495 14 C 0.150 3.850 15 C -0.132 4.132 16 C -0.122 4.122 17 C -0.121 4.121 18 C -0.133 4.133 19 H 0.278 0.722 20 H 0.140 0.860 21 H 0.138 0.862 22 H 0.094 0.906 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.668 -9.273 -1.738 12.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.156 4.156 3 Si 0.953 3.047 4 H -0.212 1.212 5 H -0.187 1.187 6 H -0.256 1.256 7 C -0.555 4.555 8 H 0.092 0.908 9 C 0.130 3.870 10 N -0.320 5.320 11 C -0.153 4.153 12 C -0.285 4.285 13 N -0.183 5.183 14 C 0.044 3.956 15 C -0.171 4.171 16 C -0.160 4.160 17 C -0.159 4.159 18 C -0.172 4.172 19 H 0.089 0.911 20 H 0.157 0.843 21 H 0.156 0.844 22 H 0.112 0.888 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.158 -7.073 -1.548 10.181 hybrid contribution 0.483 -2.789 -0.131 2.834 sum 7.642 -9.862 -1.679 12.588 Atomic orbital electron populations 1.70627 1.07826 1.32241 1.34655 1.27241 0.95129 1.04767 0.88475 0.82611 0.73525 0.70282 0.78329 1.21210 1.18722 1.25555 1.19311 0.89336 0.96876 1.50014 0.90777 1.20365 0.92114 0.80387 0.94145 1.69868 1.03512 1.27184 1.31434 1.21765 0.95018 0.92780 1.05692 1.21758 0.88413 0.97296 1.20996 1.45294 1.07373 1.08822 1.56828 1.21588 0.99946 0.80897 0.93126 1.22760 1.01635 0.94877 0.97804 1.22457 0.99842 0.97004 0.96718 1.22323 0.98995 0.96705 0.97830 1.22538 0.99196 0.98084 0.97373 0.91084 0.84280 0.84447 0.88835 0.90760 0.91449 0.91484 0.91635 0.91846 0.91756 0.91402 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.59 13.65 55.56 0.76 -22.83 16 2 C 0.06 1.81 5.52 -17.29 -0.10 1.72 16 3 Si 1.12 29.10 26.37 -169.99 -4.48 24.62 16 4 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 5 H -0.26 -6.90 6.27 56.52 0.35 -6.55 16 6 H -0.32 -8.15 7.11 56.52 0.40 -7.75 16 7 C -0.52 -14.51 9.42 -38.17 -0.36 -14.87 16 8 H 0.07 2.06 6.98 -52.49 -0.37 1.70 16 9 C 0.37 10.07 7.12 -155.60 -1.11 8.96 16 10 N -0.59 -16.16 6.43 -12.72 -0.08 -16.24 16 11 C 0.00 -0.07 11.85 -17.88 -0.21 -0.28 16 12 C -0.16 -3.36 10.05 -16.24 -0.16 -3.52 16 13 N -0.49 -11.33 2.65 -107.70 -0.29 -11.62 16 14 C 0.15 2.79 3.60 -66.82 -0.24 2.55 16 15 C -0.13 -2.07 6.47 -25.07 -0.16 -2.23 16 16 C -0.12 -1.49 6.91 -24.74 -0.17 -1.66 16 17 C -0.12 -1.51 6.83 -25.08 -0.17 -1.68 16 18 C -0.13 -2.09 6.41 -25.61 -0.16 -2.26 16 19 H 0.28 7.60 8.73 -40.82 -0.36 7.24 16 20 H 0.14 2.81 8.06 -52.48 -0.42 2.39 16 21 H 0.14 2.53 8.06 -52.49 -0.42 2.10 16 22 H 0.09 1.86 6.76 -51.93 -0.35 1.51 16 23 H 0.07 1.22 7.30 -51.93 -0.38 0.84 16 24 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.28 7.54 -51.93 -0.39 0.89 16 LS Contribution 246.03 15.07 3.71 3.71 Total: -1.00 -30.60 246.03 -7.30 -37.90 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -4.07 Total: -2.26 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -2.85 Total: -13.27 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.39 Total: -50.69 kcal Atomic # 14 Polarization: 29.10 SS G_CDS: -4.48 Total: 24.62 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -30.60 -7.30 -37.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261214866.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.447 kcal (2) G-P(sol) polarization free energy of solvation -30.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds