Wall clock time and date at job start Mon Mar 30 2020 02:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48503 * 109.47086 * 239.99991 * 3 2 1 5 5 H 1.48503 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 119.99935 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47300 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46925 * 180.02562 * 10 9 7 12 12 C 1.34667 * 126.59221 * 85.02977 * 11 10 9 13 13 N 1.34122 * 108.02481 * 179.97438 * 12 11 10 14 14 C 1.30502 * 109.25414 * 0.02562 * 13 12 11 15 15 N 1.35050 * 108.69825 * 359.76390 * 14 13 12 16 16 C 1.46502 * 126.39697 * 180.26981 * 15 14 13 17 17 C 1.53002 * 117.49927 * 8.86891 * 16 15 14 18 18 C 1.53001 * 117.49993 * 300.20850 * 16 15 14 19 19 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 21 21 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 22 22 H 1.09000 * 109.46497 * 60.00269 * 10 9 7 23 23 H 1.09000 * 109.47312 * 300.00049 * 10 9 7 24 24 H 1.08009 * 125.98907 * 359.96102 * 12 11 10 25 25 H 1.08000 * 125.65202 * 180.02562 * 14 13 12 26 26 H 1.08997 * 115.54992 * 154.53610 * 16 15 14 27 27 H 1.09004 * 117.49807 * 359.97438 * 17 16 15 28 28 H 1.08997 * 117.49898 * 145.01583 * 17 16 15 29 29 H 1.08996 * 117.50168 * 214.97872 * 18 16 15 30 30 H 1.09000 * 117.49513 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4917 -4.9672 -0.0045 12 6 1.0095 -5.6143 -1.0827 13 7 0.4061 -6.7346 -0.6588 14 6 0.4956 -6.8061 0.6412 15 7 1.1700 -5.7251 1.0889 16 6 1.4950 -5.4198 2.4844 17 6 1.2192 -6.5045 3.5276 18 6 0.3294 -5.2606 3.4627 19 1 -0.4851 0.8400 0.0004 20 1 0.6247 -2.5563 -0.8920 21 1 0.6240 -2.5576 0.8880 22 1 2.8718 -3.6051 0.8873 23 1 2.8719 -3.6036 -0.8927 24 1 1.0937 -5.2881 -2.1089 25 1 0.0999 -7.6005 1.2567 26 1 2.3691 -4.7865 2.6358 27 1 0.7956 -7.4452 3.1757 28 1 1.9118 -6.5846 4.3655 29 1 0.4368 -4.5230 4.2579 30 1 -0.6792 -5.3827 3.0678 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261234090.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:33 Heat of formation + Delta-G solvation = 55.618470 kcal Electronic energy + Delta-G solvation = -12969.058219 eV Core-core repulsion = 10765.091526 eV Total energy + Delta-G solvation = -2203.966692 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.05709 -38.15546 -36.03339 -33.85765 -32.53945 -29.83317 -26.75388 -24.48326 -23.47362 -23.37912 -21.86333 -20.26877 -18.66789 -18.02265 -16.67186 -16.46774 -15.91751 -15.32798 -14.83541 -14.66446 -14.38662 -14.13550 -13.63376 -13.08533 -12.81242 -12.55834 -12.50371 -12.26218 -11.94181 -11.73160 -11.62536 -11.32750 -10.90450 -10.56497 -10.14468 -9.22160 -8.20063 -6.33068 1.08660 1.40959 1.44070 1.52021 1.80440 2.18378 2.41198 2.77169 3.12886 3.50983 3.74857 3.83202 3.87252 3.98092 4.28002 4.48246 4.64778 4.69131 4.78091 4.89412 4.95684 5.03858 5.09989 5.37106 5.46402 5.71538 5.79277 5.81915 6.18787 6.38070 6.83582 7.11418 7.36832 8.91274 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.038833 B = 0.008029 C = 0.007222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.855042 B = 3486.702779 C = 3876.172122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.044 3.956 10 C -0.025 4.025 11 C -0.009 4.009 12 C -0.062 4.062 13 N -0.525 5.525 14 C 0.170 3.830 15 N -0.427 5.427 16 C 0.022 3.978 17 C -0.135 4.135 18 C -0.182 4.182 19 H 0.263 0.737 20 H -0.014 1.014 21 H -0.016 1.016 22 H 0.067 0.933 23 H 0.080 0.920 24 H 0.167 0.833 25 H 0.238 0.762 26 H 0.138 0.862 27 H 0.118 0.882 28 H 0.138 0.862 29 H 0.118 0.882 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.909 -11.183 8.145 14.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.085 0.915 9 C 0.006 3.994 10 C -0.064 4.064 11 C -0.124 4.124 12 C -0.208 4.208 13 N -0.244 5.244 14 C -0.111 4.111 15 N -0.109 5.109 16 C -0.082 4.082 17 C -0.172 4.172 18 C -0.220 4.220 19 H 0.072 0.928 20 H 0.005 0.995 21 H 0.003 0.997 22 H 0.085 0.915 23 H 0.098 0.902 24 H 0.184 0.816 25 H 0.254 0.746 26 H 0.155 0.845 27 H 0.136 0.864 28 H 0.156 0.844 29 H 0.136 0.864 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.415 -11.635 7.767 14.400 hybrid contribution 0.284 1.681 0.171 1.714 sum 3.699 -9.954 7.938 13.258 Atomic orbital electron populations 1.70118 1.07992 1.27860 1.51417 1.26006 0.95695 1.03475 0.94586 0.85477 0.78219 0.77872 0.79342 1.19064 1.21074 1.18871 1.21636 0.93738 0.91862 1.50891 0.91474 1.18836 0.93807 0.92251 0.94480 1.20014 0.96594 0.87409 1.02365 1.21642 1.06425 0.97156 0.87205 1.22152 1.04971 0.94458 0.99215 1.70177 1.22550 1.21128 1.10541 1.25388 1.00532 0.93613 0.91588 1.44891 1.41476 1.18084 1.06408 1.22262 1.02385 1.07471 0.76080 1.23567 1.01921 0.93266 0.98416 1.23505 0.95420 1.02110 1.00965 0.92806 0.99512 0.99738 0.91472 0.90169 0.81554 0.74620 0.84453 0.86385 0.84413 0.86368 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.97 43.75 29.54 68.60 2.03 45.78 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.54 -30.58 9.11 25.60 0.23 -30.35 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 9 C 0.04 2.34 4.95 29.85 0.15 2.49 16 10 C -0.03 -1.06 5.49 29.85 0.16 -0.90 16 11 C -0.01 -0.35 6.21 40.95 0.25 -0.10 16 12 C -0.06 -2.48 11.79 83.52 0.98 -1.49 16 13 N -0.53 -19.95 11.25 -200.30 -2.25 -22.21 16 14 C 0.17 5.26 11.89 180.26 2.14 7.40 16 15 N -0.43 -14.02 3.09 -492.16 -1.52 -15.53 16 16 C 0.02 0.55 6.62 44.99 0.30 0.85 16 17 C -0.13 -2.09 9.99 30.62 0.31 -1.78 16 18 C -0.18 -3.97 10.40 30.62 0.32 -3.65 16 19 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 20 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 21 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 22 H 0.07 2.61 7.25 -2.39 -0.02 2.59 16 23 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 24 H 0.17 6.34 8.06 -2.91 -0.02 6.32 16 25 H 0.24 4.85 7.03 -2.91 -0.02 4.83 16 26 H 0.14 3.54 7.37 -2.39 -0.02 3.52 16 27 H 0.12 1.48 6.85 -2.38 -0.02 1.46 16 28 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -70.45 261.84 4.97 -65.49 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 1.12 Total: 10.57 kcal Atomic # 6 Polarization: -32.36 SS G_CDS: 5.31 Total: -27.05 kcal Atomic # 7 Polarization: -91.30 SS G_CDS: -3.49 Total: -94.78 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -70.45 4.97 -65.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261234090.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.104 kcal (2) G-P(sol) polarization free energy of solvation -70.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds