Wall clock time and date at job start Mon Mar 30 2020 02:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47348 * 2 1 4 4 N 1.46906 * 109.47116 * 240.00120 * 2 1 3 5 5 C 1.46901 * 110.99966 * 85.00119 * 4 2 1 6 6 C 1.50698 * 109.47079 * 180.02562 * 5 4 2 7 7 H 1.08001 * 120.00157 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99849 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00111 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99989 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47118 * 89.99957 * 10 8 6 12 12 H 1.48500 * 109.47241 * 210.00380 * 10 8 6 13 13 H 1.48505 * 109.46873 * 330.00396 * 10 8 6 14 14 C 1.50699 * 109.47003 * 120.00404 * 2 1 3 15 15 C 1.38647 * 120.78723 * 259.99337 * 14 2 1 16 16 C 1.38209 * 119.16168 * 179.74448 * 15 14 2 17 17 N 1.31875 * 120.76041 * 0.25720 * 16 15 14 18 18 C 1.31861 * 121.73030 * 0.02562 * 17 16 15 19 19 C 1.38204 * 120.76410 * 359.97438 * 18 17 16 20 20 H 1.08993 * 109.47713 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47228 * 300.00359 * 1 2 3 22 22 H 1.09006 * 109.47468 * 59.99793 * 1 2 3 23 23 H 1.00897 * 111.00159 * 208.95845 * 4 2 1 24 24 H 1.09005 * 109.46801 * 300.00280 * 5 4 2 25 25 H 1.08994 * 109.47197 * 60.00347 * 5 4 2 26 26 H 0.97010 * 120.00149 * 179.97438 * 9 8 6 27 27 H 1.08002 * 120.42293 * 0.02952 * 15 14 2 28 28 H 1.07995 * 119.61831 * 180.23405 * 16 15 14 29 29 H 1.07997 * 119.61902 * 180.02562 * 18 17 16 30 30 H 1.08005 * 120.42170 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5873 -0.5217 -3.5561 7 1 2.8362 -1.5699 -3.4799 8 6 2.7305 0.1351 -4.7598 9 7 2.4269 1.4113 -4.8527 10 14 3.3556 -0.7878 -6.2589 11 1 2.2059 -1.3700 -6.9968 12 1 4.0901 0.1493 -7.1463 13 1 4.2678 -1.8764 -5.8251 14 6 2.0322 -0.7105 1.2304 15 6 2.4639 0.0052 2.3366 16 6 2.9130 -0.6808 3.4493 17 7 2.9383 -1.9992 3.4640 18 6 2.5408 -2.7121 2.4284 19 6 2.0791 -2.0954 1.2810 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 2.9172 -1.1206 -1.0288 24 1 1.0870 0.6164 -2.5525 25 1 2.7589 1.0461 -2.1183 26 1 2.5280 1.8736 -5.6996 27 1 2.4452 1.0850 2.3308 28 1 3.2473 -0.1308 4.3164 29 1 2.5757 -3.7904 2.4776 30 1 1.7545 -2.6847 0.4361 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199585.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:06 Heat of formation + Delta-G solvation = 25.675422 kcal Electronic energy + Delta-G solvation = -12772.940108 eV Core-core repulsion = 10567.674988 eV Total energy + Delta-G solvation = -2205.265120 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.06434 -36.43329 -33.18554 -31.57962 -31.01993 -29.22791 -26.23198 -23.93986 -23.32406 -21.70346 -20.12789 -17.07334 -16.18384 -15.96339 -15.36675 -14.66881 -14.45043 -13.95013 -13.70693 -13.29457 -12.99354 -12.35998 -11.76841 -11.66541 -11.55703 -11.41292 -10.94407 -10.69009 -10.49447 -9.99479 -9.45075 -9.32693 -9.14547 -9.00695 -8.52482 -7.43082 -6.07540 -4.09737 1.27683 1.41493 3.29880 3.35730 3.39387 3.96166 4.39072 4.56636 4.76393 4.90916 5.17793 5.28761 5.33447 5.36117 5.64895 5.79438 5.84342 5.96955 6.06602 6.18834 6.35466 6.55909 6.65572 6.86013 7.18451 7.34146 7.72850 8.06354 8.07932 8.29435 8.51634 8.99020 9.55406 11.03561 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.052089 B = 0.006675 C = 0.006326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.413986 B = 4193.776701 C = 4425.275778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.116 3.884 3 H 0.047 0.953 4 N -0.681 5.681 5 C 0.194 3.806 6 C -0.515 4.515 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.900 3.100 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 C -0.033 4.033 15 C -0.172 4.172 16 C 0.091 3.909 17 N -0.495 5.495 18 C 0.091 3.909 19 C -0.151 4.151 20 H 0.059 0.941 21 H 0.046 0.954 22 H 0.064 0.936 23 H 0.331 0.669 24 H 0.031 0.969 25 H -0.013 1.013 26 H 0.262 0.738 27 H 0.131 0.869 28 H 0.151 0.849 29 H 0.153 0.847 30 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.094 -3.260 12.337 12.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.006 3.994 3 H 0.065 0.935 4 N -0.312 5.312 5 C 0.067 3.933 6 C -0.554 4.554 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.727 3.273 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.041 4.041 15 C -0.192 4.192 16 C -0.066 4.066 17 N -0.205 5.205 18 C -0.066 4.066 19 C -0.171 4.171 20 H 0.078 0.922 21 H 0.065 0.935 22 H 0.083 0.917 23 H 0.148 0.852 24 H 0.049 0.951 25 H 0.005 0.995 26 H 0.071 0.929 27 H 0.149 0.851 28 H 0.168 0.832 29 H 0.170 0.830 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.422 -3.777 12.767 13.389 hybrid contribution 0.794 0.696 -1.462 1.804 sum -0.628 -3.081 11.304 11.734 Atomic orbital electron populations 1.21731 0.93861 1.02163 1.01067 1.20509 0.96105 0.95367 0.87453 0.93468 1.60853 1.32587 1.34571 1.03213 1.19622 0.96661 0.90183 0.86784 1.21163 1.43522 0.96752 0.93963 0.91929 1.24987 0.95598 0.94898 0.99044 1.69959 1.48788 1.09003 1.25949 0.86473 0.78908 0.79469 0.82401 1.20565 1.21278 1.19840 1.20655 0.93751 0.94244 0.95476 1.22079 1.01305 1.01341 0.94493 1.22638 0.96294 0.90282 0.97378 1.67620 1.15421 1.08065 1.29379 1.22748 0.94777 1.00148 0.88911 1.22152 1.00210 0.95035 0.99726 0.92207 0.93502 0.91691 0.85211 0.95134 0.99516 0.92860 0.85121 0.83182 0.83002 0.83758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 9.40 37.15 0.35 -1.74 16 2 C 0.12 2.01 2.86 -68.86 -0.20 1.81 16 3 H 0.05 0.86 7.70 -51.93 -0.40 0.46 16 4 N -0.68 -14.12 5.75 -109.22 -0.63 -14.74 16 5 C 0.19 4.98 5.24 -4.98 -0.03 4.95 16 6 C -0.52 -14.42 9.32 -34.44 -0.32 -14.74 16 7 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 10 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 14 C -0.03 -0.49 4.74 -104.32 -0.49 -0.99 16 15 C -0.17 -2.30 9.78 -39.44 -0.39 -2.69 16 16 C 0.09 1.17 11.18 -17.54 -0.20 0.97 16 17 N -0.50 -7.06 10.36 -13.25 -0.14 -7.20 16 18 C 0.09 1.21 11.18 -17.55 -0.20 1.01 16 19 C -0.15 -2.16 9.12 -39.44 -0.36 -2.52 16 20 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.06 1.13 7.45 -51.93 -0.39 0.75 16 23 H 0.33 6.72 7.99 -39.29 -0.31 6.41 16 24 H 0.03 0.84 7.44 -51.93 -0.39 0.45 16 25 H -0.01 -0.35 8.05 -51.93 -0.42 -0.77 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 28 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.14 2.05 7.79 -52.48 -0.41 1.64 16 LS Contribution 261.54 15.07 3.94 3.94 Total: -1.00 -30.14 261.54 -7.01 -37.14 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -3.97 Total: 2.64 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -1.92 Total: -12.44 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -0.03 Total: -47.79 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.14 -7.01 -37.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199585.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.816 kcal (2) G-P(sol) polarization free energy of solvation -30.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds