Wall clock time and date at job start Mon Mar 30 2020 02:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.50697 * 109.47053 * 188.95368 * 3 2 1 5 5 C 1.38231 * 120.00428 * 269.72833 * 4 3 2 6 6 C 1.38233 * 120.00278 * 179.76826 * 5 4 3 7 7 C 1.38235 * 119.99979 * 0.50399 * 6 5 4 8 8 C 1.38243 * 119.99804 * 359.74858 * 7 6 5 9 9 C 1.38233 * 119.99991 * 0.02562 * 8 7 6 10 10 N 1.36592 * 111.00246 * 123.95232 * 2 1 3 11 11 C 1.36945 * 119.99692 * 116.04602 * 10 2 1 12 12 H 1.07996 * 120.00217 * 0.02562 * 11 10 2 13 13 C 1.38810 * 119.99942 * 180.02562 * 11 10 2 14 14 N 1.31619 * 120.00458 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 119.99885 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47038 * 90.00077 * 15 13 11 17 17 H 1.48508 * 109.47056 * 210.00072 * 15 13 11 18 18 H 1.48495 * 109.47191 * 329.99606 * 15 13 11 19 19 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 20 20 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 21 21 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46851 * 308.95569 * 3 2 1 23 23 H 1.08995 * 109.47117 * 68.95564 * 3 2 1 24 24 H 1.07999 * 119.99652 * 359.97438 * 5 4 3 25 25 H 1.08006 * 120.00113 * 180.23137 * 6 5 4 26 26 H 1.07999 * 119.99991 * 179.72800 * 7 6 5 27 27 H 1.07996 * 119.99780 * 179.97438 * 8 7 6 28 28 H 1.07994 * 119.99829 * 179.97438 * 9 8 7 29 29 H 0.97003 * 120.00671 * 296.05026 * 10 2 1 30 30 H 0.96996 * 120.00663 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.4857 1.3375 -0.2211 5 6 4.3434 1.2609 0.8602 6 6 5.7102 1.2249 0.6571 7 6 6.2198 1.2761 -0.6269 8 6 5.3622 1.3580 -1.7081 9 6 3.9952 1.3893 -1.5052 10 7 1.9586 -0.7122 1.0578 11 6 2.6901 -1.8488 0.8380 12 1 2.8803 -2.1818 -0.1716 13 6 3.1872 -2.5729 1.9129 14 7 3.8908 -3.6651 1.7018 15 14 2.8576 -1.9972 3.6593 16 1 1.5962 -2.6068 4.1516 17 1 3.9823 -2.4097 4.5370 18 1 2.7326 -0.5177 3.6774 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.5224 1.9422 -0.7992 23 1 1.7811 1.8429 0.9591 24 1 3.9454 1.2257 1.8636 25 1 6.3802 1.1612 1.5018 26 1 7.2878 1.2524 -0.7853 27 1 5.7603 1.3984 -2.7112 28 1 3.3254 1.4537 -2.3498 29 1 1.7880 -0.4130 1.9646 30 1 4.2378 -4.1713 2.4529 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039393604.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:56 Heat of formation + Delta-G solvation = 77.355490 kcal Electronic energy + Delta-G solvation = -13392.721429 eV Core-core repulsion = 11189.697325 eV Total energy + Delta-G solvation = -2203.024104 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.83823 -36.88832 -32.66404 -31.21776 -30.31265 -29.52648 -26.21571 -24.19321 -22.00971 -21.53460 -20.34984 -17.80816 -16.35628 -15.64912 -14.82009 -14.67581 -14.28516 -14.16200 -13.27905 -12.85322 -12.59536 -12.36554 -11.99717 -11.80062 -11.56881 -11.03440 -10.95331 -10.45875 -10.42645 -10.36040 -9.54631 -9.06676 -8.29664 -8.21104 -7.72627 -7.35844 -5.70052 -3.08057 1.94453 2.02279 3.33357 3.37284 3.43703 4.23503 4.59824 4.66970 5.29009 5.37066 5.52390 5.59560 5.62401 5.68554 5.86551 5.90982 5.97724 6.11978 6.18462 6.33227 6.46641 6.56373 6.62702 7.00535 7.06993 7.26027 7.56832 7.68881 8.26243 8.56826 9.42631 10.06921 10.30937 11.48240 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.026165 B = 0.013966 C = 0.010869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.894158 B = 2004.371512 C = 2575.580879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.279 5.279 3 C 0.071 3.929 4 C -0.053 4.053 5 C -0.083 4.083 6 C -0.120 4.120 7 C -0.127 4.127 8 C -0.128 4.128 9 C -0.104 4.104 10 N -0.593 5.593 11 C -0.205 4.205 12 H 0.097 0.903 13 C 0.007 3.993 14 N -0.933 5.933 15 Si 0.873 3.127 16 H -0.285 1.285 17 H -0.289 1.289 18 H -0.282 1.282 19 H 0.061 0.939 20 H 0.014 0.986 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.032 0.968 24 H 0.110 0.890 25 H 0.113 0.887 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.347 0.653 30 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.971 12.043 -3.315 12.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.094 5.094 3 C -0.057 4.057 4 C -0.053 4.053 5 C -0.102 4.102 6 C -0.138 4.138 7 C -0.145 4.145 8 C -0.146 4.146 9 C -0.123 4.123 10 N -0.333 5.333 11 C -0.334 4.334 12 H 0.115 0.885 13 C -0.189 4.189 14 N -0.582 5.582 15 Si 0.704 3.296 16 H -0.212 1.212 17 H -0.216 1.216 18 H -0.208 1.208 19 H 0.079 0.921 20 H 0.032 0.968 21 H 0.091 0.909 22 H 0.093 0.907 23 H 0.050 0.950 24 H 0.128 0.872 25 H 0.131 0.869 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.184 0.816 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.720 11.623 -3.843 12.263 hybrid contribution -0.492 0.641 2.173 2.318 sum -1.211 12.264 -1.670 12.437 Atomic orbital electron populations 1.22925 0.89838 1.02258 0.98965 1.62493 1.04599 1.09054 1.33287 1.21614 0.92370 0.92054 0.99658 1.19489 0.94561 0.98166 0.93100 1.20883 0.93117 0.97776 0.98441 1.21003 0.95326 1.00639 0.96838 1.20975 0.99064 1.01516 0.92945 1.20962 0.93613 1.01818 0.98249 1.20864 0.94941 1.00269 0.96215 1.42284 1.64603 1.28167 0.98252 1.18863 1.22899 0.96325 0.95327 0.88486 1.24453 1.00497 0.97414 0.96549 1.69656 1.40898 1.17790 1.29857 0.86738 0.77722 0.77774 0.87335 1.21208 1.21559 1.20835 0.92061 0.96783 0.90873 0.90659 0.94975 0.87173 0.86860 0.86944 0.86860 0.86697 0.81648 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.96 60.07 0.60 0.75 16 2 N -0.28 -5.76 4.94 -122.42 -0.60 -6.37 16 3 C 0.07 1.26 5.32 -4.97 -0.03 1.23 16 4 C -0.05 -0.99 5.13 -104.62 -0.54 -1.53 16 5 C -0.08 -1.63 9.30 -39.59 -0.37 -2.00 16 6 C -0.12 -2.16 10.05 -39.58 -0.40 -2.56 16 7 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 8 C -0.13 -2.08 10.05 -39.58 -0.40 -2.48 16 9 C -0.10 -1.80 9.70 -39.58 -0.38 -2.18 16 10 N -0.59 -14.30 3.87 31.50 0.12 -14.18 16 11 C -0.20 -5.83 10.79 -15.06 -0.16 -5.99 16 12 H 0.10 3.08 8.06 -52.49 -0.42 2.65 16 13 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 14 N -0.93 -29.47 13.97 55.49 0.78 -28.70 16 15 Si 0.87 22.00 27.74 -169.99 -4.71 17.29 16 16 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 17 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 18 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 19 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 20 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 21 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 22 H 0.08 1.12 8.02 -51.93 -0.42 0.70 16 23 H 0.03 0.55 8.08 -51.93 -0.42 0.13 16 24 H 0.11 2.19 8.06 -52.49 -0.42 1.77 16 25 H 0.11 1.83 8.06 -52.48 -0.42 1.40 16 26 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 27 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 28 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.35 8.21 5.89 -185.16 -1.09 7.12 16 30 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 260.14 15.07 3.92 3.92 Total: -1.00 -31.74 260.14 -7.57 -39.31 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -4.90 Total: 5.88 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -2.17 Total: -17.15 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.29 Total: -49.24 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.74 -7.57 -39.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039393604.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.661 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds