Wall clock time and date at job start Mon Mar 30 2020 02:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47351 * 2 1 4 4 C 1.50701 * 109.46652 * 239.99681 * 2 1 3 5 5 H 1.08002 * 120.00237 * 245.39287 * 4 2 1 6 6 C 1.37878 * 119.99706 * 65.39934 * 4 2 1 7 7 N 1.31512 * 120.00144 * 5.18632 * 6 4 2 8 8 Si 1.86805 * 119.99720 * 185.18801 * 6 4 2 9 9 H 1.48492 * 109.47156 * 94.99868 * 8 6 4 10 10 H 1.48499 * 109.47028 * 215.00160 * 8 6 4 11 11 H 1.48507 * 109.47065 * 334.99482 * 8 6 4 12 12 N 1.46498 * 109.46781 * 120.00088 * 2 1 3 13 13 C 1.46502 * 120.00206 * 65.02411 * 12 2 1 14 14 C 1.38995 * 120.00022 * 245.01578 * 12 2 1 15 15 C 1.39147 * 119.70609 * 0.25347 * 14 12 2 16 16 C 1.38292 * 119.09405 * 179.76745 * 15 14 12 17 17 C 1.38882 * 118.51043 * 0.48859 * 16 15 14 18 18 C 1.38018 * 119.32550 * 359.51172 * 17 16 15 19 19 N 1.31967 * 120.86007 * 0.24695 * 18 17 16 20 20 H 1.08998 * 109.47673 * 174.94134 * 1 2 3 21 21 H 1.09001 * 109.46868 * 294.94098 * 1 2 3 22 22 H 1.09007 * 109.47200 * 54.93544 * 1 2 3 23 23 H 0.97003 * 119.99655 * 180.02562 * 7 6 4 24 24 H 1.09009 * 109.46778 * 269.99626 * 13 12 2 25 25 H 1.09000 * 109.47392 * 29.98935 * 13 12 2 26 26 H 1.08994 * 109.47227 * 149.99700 * 13 12 2 27 27 H 1.07996 * 120.44664 * 359.97438 * 15 14 12 28 28 H 1.08009 * 120.74152 * 180.25008 * 16 15 14 29 29 H 1.08002 * 120.33672 * 179.77766 * 17 16 15 30 30 H 1.08008 * 119.56859 * 180.22894 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.5794 -1.6366 -1.1338 6 6 1.7933 -0.1781 -2.4797 7 7 1.2176 0.9988 -2.5938 8 14 2.2872 -1.1286 -4.0101 9 1 1.1232 -1.9047 -4.5079 10 1 2.7344 -0.1785 -5.0601 11 1 3.3969 -2.0583 -3.6788 12 7 2.0183 -0.6906 1.1962 13 6 1.7573 -2.1212 1.3739 14 6 2.7292 0.0114 2.1624 15 6 2.9692 1.3711 1.9899 16 6 3.6737 2.0582 2.9616 17 6 4.1254 1.3580 4.0726 18 6 3.8516 0.0095 4.1792 19 7 3.1725 -0.6197 3.2387 20 1 -0.3634 -1.0236 -0.0906 21 1 -0.3633 0.4334 0.9319 22 1 -0.3634 0.5904 -0.8412 23 1 1.0492 1.3731 -3.4727 24 1 0.8143 -2.2554 1.9039 25 1 1.6975 -2.6036 0.3983 26 1 2.5658 -2.5690 1.9517 27 1 2.6072 1.8835 1.1109 28 1 3.8715 3.1148 2.8567 29 1 4.6817 1.8645 4.8475 30 1 4.1978 -0.5381 5.0434 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095916.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:25 Heat of formation + Delta-G solvation = 44.486867 kcal Electronic energy + Delta-G solvation = -13297.335161 eV Core-core repulsion = 11092.885767 eV Total energy + Delta-G solvation = -2204.449395 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.52394 -36.30741 -32.97478 -31.73946 -30.06760 -28.91322 -25.50812 -25.25692 -22.87546 -21.80733 -19.74532 -16.93906 -16.44567 -15.57428 -15.12235 -14.53014 -14.10319 -13.93100 -13.23977 -12.59751 -12.49405 -12.28397 -11.71344 -11.40301 -11.24883 -11.03501 -10.88131 -10.69992 -10.30181 -10.11816 -9.50321 -9.21606 -8.90264 -8.74868 -8.48465 -6.64413 -6.15058 -4.22887 1.93134 2.10674 3.22765 3.30277 3.33586 3.94952 4.34956 4.58807 5.12477 5.18345 5.39166 5.75759 5.80656 5.95468 6.22966 6.31537 6.34467 6.54725 6.62767 6.66593 6.79137 6.89912 6.95677 7.20823 7.39872 7.50369 7.72772 7.97990 8.09324 8.51096 8.74022 8.95756 9.43719 10.89526 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.044200 B = 0.009156 C = 0.008761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.331369 B = 3057.318964 C = 3195.048599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.263 3.737 3 H 0.059 0.941 4 C -0.528 4.528 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.583 5.583 13 C 0.104 3.896 14 C 0.413 3.587 15 C -0.241 4.241 16 C -0.039 4.039 17 C -0.266 4.266 18 C 0.143 3.857 19 N -0.561 5.561 20 H 0.035 0.965 21 H 0.015 0.985 22 H 0.078 0.922 23 H 0.264 0.736 24 H 0.032 0.968 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.138 0.862 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.253 -0.051 7.888 8.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.163 3.837 3 H 0.077 0.923 4 C -0.567 4.567 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.527 5.527 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.291 5.291 13 C -0.040 4.040 14 C 0.176 3.824 15 C -0.266 4.266 16 C -0.064 4.064 17 C -0.290 4.290 18 C -0.015 4.015 19 N -0.280 5.280 20 H 0.054 0.946 21 H 0.034 0.966 22 H 0.097 0.903 23 H 0.074 0.926 24 H 0.051 0.949 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.156 0.844 28 H 0.140 0.860 29 H 0.136 0.864 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.870 -0.927 7.617 7.898 hybrid contribution 0.403 0.456 -0.979 1.153 sum 2.273 -0.471 6.638 7.032 Atomic orbital electron populations 1.22060 0.98425 1.00250 0.99443 1.19036 0.90697 0.93927 0.80055 0.92302 1.21342 1.36150 1.08945 0.90225 0.91912 1.24893 0.94945 0.94779 0.99006 1.69920 1.42678 1.15915 1.24178 0.86482 0.78814 0.79759 0.82415 1.20552 1.21088 1.19824 1.47173 1.54018 1.08448 1.19427 1.21373 0.99354 0.81884 1.01363 1.18574 0.88126 0.88458 0.87228 1.21654 1.07669 0.94491 1.02828 1.21196 0.93508 0.99214 0.92508 1.21537 1.09839 0.96340 1.01292 1.22200 0.92253 0.91745 0.95312 1.67205 1.17536 1.39852 1.03435 0.94618 0.96596 0.90336 0.92604 0.94909 0.91008 0.92071 0.84392 0.85993 0.86396 0.84021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.98 37.16 0.33 -3.00 16 2 C 0.26 6.46 2.43 -69.08 -0.17 6.29 16 3 H 0.06 1.54 5.25 -51.93 -0.27 1.27 16 4 C -0.53 -13.98 8.00 -34.44 -0.28 -14.25 16 5 H 0.06 1.68 6.79 -52.49 -0.36 1.32 16 6 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 7 N -0.89 -24.28 11.99 55.43 0.66 -23.61 16 8 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.58 -13.10 2.87 -175.41 -0.50 -13.60 16 13 C 0.10 2.09 9.74 59.85 0.58 2.67 16 14 C 0.41 8.89 7.38 -155.02 -1.14 7.74 16 15 C -0.24 -4.84 9.33 -39.22 -0.37 -5.20 16 16 C -0.04 -0.64 10.16 -39.32 -0.40 -1.04 16 17 C -0.27 -4.08 10.10 -39.42 -0.40 -4.48 16 18 C 0.14 2.36 11.17 -17.57 -0.20 2.16 16 19 N -0.56 -11.16 9.11 -12.44 -0.11 -11.28 16 20 H 0.03 0.80 7.95 -51.93 -0.41 0.39 16 21 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 22 H 0.08 1.95 6.84 -51.93 -0.36 1.60 16 23 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 24 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 25 H 0.07 1.46 6.55 -51.93 -0.34 1.12 16 26 H 0.06 1.17 7.36 -51.93 -0.38 0.79 16 27 H 0.14 2.89 5.72 -52.49 -0.30 2.59 16 28 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 29 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.14 1.83 8.06 -52.48 -0.42 1.40 16 LS Contribution 252.64 15.07 3.81 3.81 Total: -1.00 -28.14 252.64 -6.96 -35.10 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -3.67 Total: 1.33 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -2.13 Total: -7.43 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 0.05 Total: -48.49 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.14 -6.96 -35.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095916.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.585 kcal (2) G-P(sol) polarization free energy of solvation -28.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds