Wall clock time and date at job start Mon Mar 30 2020 02:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47351 * 2 1 4 4 C 1.50701 * 109.46652 * 239.99681 * 2 1 3 5 5 H 1.08002 * 120.00237 * 245.39287 * 4 2 1 6 6 C 1.37878 * 119.99706 * 65.39934 * 4 2 1 7 7 N 1.31512 * 120.00144 * 5.18632 * 6 4 2 8 8 Si 1.86805 * 119.99720 * 185.18801 * 6 4 2 9 9 H 1.48492 * 109.47156 * 94.99868 * 8 6 4 10 10 H 1.48499 * 109.47028 * 215.00160 * 8 6 4 11 11 H 1.48507 * 109.47065 * 334.99482 * 8 6 4 12 12 N 1.46498 * 109.46781 * 120.00088 * 2 1 3 13 13 C 1.46502 * 120.00206 * 65.02411 * 12 2 1 14 14 C 1.38995 * 120.00022 * 245.01578 * 12 2 1 15 15 C 1.39147 * 119.70609 * 0.25347 * 14 12 2 16 16 C 1.38292 * 119.09405 * 179.76745 * 15 14 12 17 17 C 1.38882 * 118.51043 * 0.48859 * 16 15 14 18 18 C 1.38018 * 119.32550 * 359.51172 * 17 16 15 19 19 N 1.31967 * 120.86007 * 0.24695 * 18 17 16 20 20 H 1.08998 * 109.47673 * 174.94134 * 1 2 3 21 21 H 1.09001 * 109.46868 * 294.94098 * 1 2 3 22 22 H 1.09007 * 109.47200 * 54.93544 * 1 2 3 23 23 H 0.97003 * 119.99655 * 180.02562 * 7 6 4 24 24 H 1.09009 * 109.46778 * 269.99626 * 13 12 2 25 25 H 1.09000 * 109.47392 * 29.98935 * 13 12 2 26 26 H 1.08994 * 109.47227 * 149.99700 * 13 12 2 27 27 H 1.07996 * 120.44664 * 359.97438 * 15 14 12 28 28 H 1.08009 * 120.74152 * 180.25008 * 16 15 14 29 29 H 1.08002 * 120.33672 * 179.77766 * 17 16 15 30 30 H 1.08008 * 119.56859 * 180.22894 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.5794 -1.6366 -1.1338 6 6 1.7933 -0.1781 -2.4797 7 7 1.2176 0.9988 -2.5938 8 14 2.2872 -1.1286 -4.0101 9 1 1.1232 -1.9047 -4.5079 10 1 2.7344 -0.1785 -5.0601 11 1 3.3969 -2.0583 -3.6788 12 7 2.0183 -0.6906 1.1962 13 6 1.7573 -2.1212 1.3739 14 6 2.7292 0.0114 2.1624 15 6 2.9692 1.3711 1.9899 16 6 3.6737 2.0582 2.9616 17 6 4.1254 1.3580 4.0726 18 6 3.8516 0.0095 4.1792 19 7 3.1725 -0.6197 3.2387 20 1 -0.3634 -1.0236 -0.0906 21 1 -0.3633 0.4334 0.9319 22 1 -0.3634 0.5904 -0.8412 23 1 1.0492 1.3731 -3.4727 24 1 0.8143 -2.2554 1.9039 25 1 1.6975 -2.6036 0.3983 26 1 2.5658 -2.5690 1.9517 27 1 2.6072 1.8835 1.1109 28 1 3.8715 3.1148 2.8567 29 1 4.6817 1.8645 4.8475 30 1 4.1978 -0.5381 5.0434 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095916.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:24 Heat of formation + Delta-G solvation = 29.038310 kcal Electronic energy + Delta-G solvation = -13298.005061 eV Core-core repulsion = 11092.885767 eV Total energy + Delta-G solvation = -2205.119294 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.97754 -37.97891 -34.85321 -33.20725 -31.71680 -30.55474 -27.27690 -27.07148 -24.35541 -23.35187 -21.43790 -18.60343 -18.26022 -17.16591 -16.73456 -16.10392 -15.65978 -15.51771 -14.93382 -14.22147 -13.97442 -13.83474 -13.57017 -13.02855 -12.92270 -12.76258 -12.67969 -12.51233 -12.21201 -11.90366 -11.24185 -10.72915 -10.55688 -10.48332 -10.16158 -8.34668 -8.04729 -6.31252 0.54567 0.71961 1.40086 1.41777 1.51458 2.29686 2.48893 3.10255 3.17460 3.80565 4.14570 4.33517 4.48795 4.55290 4.69882 4.73608 4.75801 4.87008 4.98573 5.05182 5.08386 5.25723 5.38929 5.56309 5.62604 5.72576 5.93773 6.13005 6.29138 6.78288 6.86430 7.33007 7.47639 8.87040 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.044200 B = 0.009156 C = 0.008761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.331369 B = 3057.318964 C = 3195.048599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.270 3.730 3 H 0.037 0.963 4 C -0.542 4.542 5 H 0.054 0.946 6 C 0.023 3.977 7 N -0.914 5.914 8 Si 0.958 3.042 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.273 1.273 12 N -0.601 5.601 13 C 0.111 3.889 14 C 0.386 3.614 15 C -0.271 4.271 16 C -0.034 4.034 17 C -0.247 4.247 18 C 0.135 3.865 19 N -0.577 5.577 20 H 0.037 0.963 21 H 0.025 0.975 22 H 0.058 0.942 23 H 0.266 0.734 24 H 0.041 0.959 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.116 0.884 28 H 0.153 0.847 29 H 0.162 0.838 30 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.354 -0.052 9.324 9.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.168 3.832 3 H 0.054 0.946 4 C -0.580 4.580 5 H 0.072 0.928 6 C -0.177 4.177 7 N -0.552 5.552 8 Si 0.784 3.216 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.198 1.198 12 N -0.311 5.311 13 C -0.032 4.032 14 C 0.150 3.850 15 C -0.296 4.296 16 C -0.060 4.060 17 C -0.270 4.270 18 C -0.023 4.023 19 N -0.296 5.296 20 H 0.056 0.944 21 H 0.044 0.956 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.134 0.866 28 H 0.171 0.829 29 H 0.180 0.820 30 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 2.984 -0.927 9.088 9.610 hybrid contribution 0.157 0.529 -1.252 1.368 sum 3.142 -0.398 7.836 8.452 Atomic orbital electron populations 1.21870 0.97897 0.99981 0.99018 1.18731 0.91016 0.92837 0.80641 0.94554 1.21567 1.36211 1.08775 0.91462 0.92771 1.25608 0.94997 0.95538 1.01592 1.70020 1.43434 1.16975 1.24803 0.85544 0.78545 0.78504 0.79050 1.19783 1.20729 1.19820 1.47016 1.55513 1.09072 1.19490 1.21329 0.99979 0.80976 1.00924 1.18772 0.89213 0.89043 0.87925 1.21657 1.09856 0.94502 1.03606 1.21613 0.91851 1.00736 0.91776 1.22033 1.07963 0.95902 1.01147 1.22979 0.91022 0.92857 0.95408 1.67222 1.18176 1.40626 1.03586 0.94357 0.95578 0.92317 0.92477 0.94019 0.91990 0.91521 0.86622 0.82937 0.82035 0.80105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.15 8.98 71.98 0.65 -5.50 16 2 C 0.27 13.65 2.43 44.25 0.11 13.75 16 3 H 0.04 2.01 5.25 -2.39 -0.01 1.99 16 4 C -0.54 -29.33 8.00 25.60 0.20 -29.13 16 5 H 0.05 2.96 6.79 -2.91 -0.02 2.94 16 6 C 0.02 1.24 5.29 84.66 0.45 1.68 16 7 N -0.91 -50.87 11.99 21.45 0.26 -50.61 16 8 Si 0.96 42.78 29.54 68.60 2.03 44.81 16 9 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 12 N -0.60 -27.53 2.87 -708.86 -2.03 -29.57 16 13 C 0.11 4.50 9.74 127.77 1.24 5.74 16 14 C 0.39 16.61 7.38 133.07 0.98 17.59 16 15 C -0.27 -10.92 9.33 22.50 0.21 -10.71 16 16 C -0.03 -1.05 10.16 22.44 0.23 -0.83 16 17 C -0.25 -6.55 10.10 22.37 0.23 -6.32 16 18 C 0.14 3.98 11.17 84.62 0.95 4.93 16 19 N -0.58 -22.13 9.11 -193.26 -1.76 -23.89 16 20 H 0.04 1.75 7.95 -2.39 -0.02 1.73 16 21 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.06 3.00 6.84 -2.38 -0.02 2.99 16 23 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 24 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 25 H 0.06 2.56 6.55 -2.39 -0.02 2.55 16 26 H 0.07 2.56 7.36 -2.39 -0.02 2.54 16 27 H 0.12 5.10 5.72 -2.91 -0.02 5.09 16 28 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 29 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 30 H 0.18 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -60.95 252.64 4.86 -56.09 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 1.12 Total: 11.96 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 5.24 Total: -8.79 kcal Atomic # 7 Polarization: -100.53 SS G_CDS: -3.54 Total: -104.07 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -60.95 4.86 -56.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095916.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.131 kcal (2) G-P(sol) polarization free energy of solvation -60.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds