Wall clock time and date at job start Mon Mar 30 2020 02:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47063 * 2 1 4 4 C 1.36864 * 119.99983 * 95.59495 * 3 2 1 5 5 H 1.08001 * 119.99740 * 219.33988 * 4 3 2 6 6 C 1.38786 * 120.00156 * 39.33608 * 4 3 2 7 7 N 1.31601 * 119.99666 * 21.00916 * 6 4 3 8 8 Si 1.86793 * 120.00162 * 201.00864 * 6 4 3 9 9 H 1.48500 * 109.47406 * 60.00014 * 8 6 4 10 10 H 1.48502 * 109.47472 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47125 * 300.00135 * 8 6 4 12 12 C 1.39291 * 119.99895 * 275.59347 * 3 2 1 13 13 C 1.39151 * 120.05527 * 359.72600 * 12 3 2 14 14 C 1.38080 * 120.05866 * 179.74708 * 13 12 3 15 15 C 1.38218 * 120.16547 * 0.54904 * 14 13 12 16 16 C 1.38991 * 120.10339 * 359.70520 * 15 14 13 17 17 N 1.39677 * 120.02952 * 180.02562 * 16 15 14 18 18 C 1.38746 * 119.94003 * 0.02562 * 16 15 14 19 19 H 1.08999 * 109.46931 * 60.00305 * 1 2 3 20 20 H 1.09000 * 109.47014 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.47971 * 299.99925 * 1 2 3 22 22 H 1.09008 * 109.46809 * 119.99777 * 2 1 3 23 23 H 1.08994 * 109.47463 * 239.99936 * 2 1 3 24 24 H 0.96997 * 119.99497 * 179.97438 * 7 6 4 25 25 H 1.07997 * 119.96879 * 359.97438 * 13 12 3 26 26 H 1.08000 * 119.91871 * 180.27329 * 14 13 12 27 27 H 1.08001 * 119.94952 * 179.72619 * 15 14 13 28 28 H 0.96996 * 119.99696 * 180.02562 * 17 16 15 29 29 H 0.96996 * 120.00243 * 0.02562 * 17 16 15 30 30 H 1.07994 * 120.07900 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3553 1.9879 1.1796 5 1 2.1075 3.0263 1.3429 6 6 3.0154 1.2686 2.1661 7 7 3.6774 0.1756 1.8517 8 14 2.9643 1.8521 3.9398 9 1 1.5554 1.8922 4.4073 10 1 3.7424 0.9167 4.7913 11 1 3.5550 3.2115 4.0310 12 6 2.1395 2.0770 -1.2006 13 6 1.8026 1.4594 -2.4011 14 6 1.9179 2.1508 -3.5908 15 6 2.3786 3.4539 -3.5949 16 6 2.7221 4.0757 -2.4003 17 7 3.1870 5.3928 -2.4062 18 6 2.6027 3.3869 -1.2018 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3635 0.5138 0.8899 22 1 1.8933 -0.5138 0.8901 23 1 1.8933 -0.5138 -0.8899 24 1 4.1391 -0.3269 2.5411 25 1 1.4472 0.4396 -2.4020 26 1 1.6515 1.6707 -4.5208 27 1 2.4716 3.9900 -4.5279 28 1 3.4269 5.8262 -1.5723 29 1 3.2700 5.8741 -3.2443 30 1 2.8685 3.8680 -0.2722 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063108417.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:22 Heat of formation + Delta-G solvation = 13.267261 kcal Electronic energy + Delta-G solvation = -13317.546352 eV Core-core repulsion = 11111.743174 eV Total energy + Delta-G solvation = -2205.803178 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.21675 -37.82328 -34.89746 -33.67934 -32.19128 -29.52413 -29.04343 -26.38131 -23.87885 -22.86646 -21.36611 -19.10267 -18.15711 -17.27913 -16.68544 -16.42450 -15.66304 -15.59625 -14.73827 -14.22849 -14.10034 -13.98334 -13.51046 -13.47385 -12.84812 -12.73747 -12.44742 -12.18651 -11.94883 -11.87174 -11.58525 -11.26320 -10.82013 -10.07285 -8.52295 -8.26107 -7.87400 -5.82666 1.05842 1.21046 1.41374 1.48001 1.51428 2.31282 2.95354 3.14985 3.45383 3.50119 4.34053 4.41668 4.66646 4.68400 4.73866 4.86805 4.99870 5.11214 5.19621 5.28334 5.39829 5.46456 5.56812 5.81824 5.97589 6.08197 6.15266 6.36907 6.88208 6.91644 7.26713 7.56044 7.93140 8.77326 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.032699 B = 0.011464 C = 0.009192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.092244 B = 2441.840226 C = 3045.536386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.119 3.881 3 N -0.471 5.471 4 C -0.325 4.325 5 H 0.072 0.928 6 C -0.008 4.008 7 N -0.899 5.899 8 Si 0.978 3.022 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.269 1.269 12 C 0.232 3.768 13 C -0.293 4.293 14 C -0.030 4.030 15 C -0.297 4.297 16 C 0.251 3.749 17 N -0.872 5.872 18 C -0.309 4.309 19 H 0.050 0.950 20 H 0.076 0.924 21 H 0.041 0.959 22 H 0.072 0.928 23 H 0.047 0.953 24 H 0.267 0.733 25 H 0.108 0.892 26 H 0.136 0.864 27 H 0.128 0.872 28 H 0.397 0.603 29 H 0.405 0.595 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.134 4.140 -5.452 7.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.005 4.005 3 N -0.162 5.162 4 C -0.454 4.454 5 H 0.090 0.910 6 C -0.210 4.210 7 N -0.537 5.537 8 Si 0.802 3.198 9 H -0.194 1.194 10 H -0.206 1.206 11 H -0.195 1.195 12 C 0.118 3.882 13 C -0.318 4.318 14 C -0.049 4.049 15 C -0.322 4.322 16 C 0.146 3.854 17 N -0.412 5.412 18 C -0.338 4.338 19 H 0.069 0.931 20 H 0.095 0.905 21 H 0.060 0.940 22 H 0.090 0.910 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.126 0.874 26 H 0.154 0.846 27 H 0.146 0.854 28 H 0.225 0.775 29 H 0.234 0.766 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.054 3.787 -5.106 7.052 hybrid contribution 0.374 0.379 1.100 1.222 sum -2.681 4.165 -4.006 6.370 Atomic orbital electron populations 1.22063 0.96013 1.01766 1.01056 1.21272 0.93444 0.84249 1.01565 1.42513 1.59807 1.11519 1.02369 1.19344 1.35884 0.97719 0.92474 0.91006 1.26160 0.93733 0.97138 1.03937 1.70154 1.29809 1.18971 1.34729 0.85220 0.78489 0.78194 0.77857 1.19380 1.20632 1.19451 1.18318 0.91264 0.91833 0.86762 1.20463 1.18560 1.00935 0.91834 1.20722 0.93979 0.93500 0.96711 1.20288 1.18370 0.97696 0.95878 1.17561 0.89813 0.85114 0.92955 1.42303 1.75649 1.11509 1.11745 1.19883 1.21031 0.96341 0.96560 0.93090 0.90501 0.94029 0.90956 0.93446 0.92328 0.87424 0.84611 0.85385 0.77456 0.76551 0.88729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.89 10.12 71.98 0.73 -5.17 16 2 C 0.12 5.63 5.29 86.38 0.46 6.09 16 3 N -0.47 -24.73 2.62 -511.92 -1.34 -26.07 16 4 C -0.33 -17.93 8.39 84.04 0.71 -17.23 16 5 H 0.07 3.97 6.93 -2.91 -0.02 3.95 16 6 C -0.01 -0.44 4.88 84.86 0.41 -0.03 16 7 N -0.90 -50.55 11.67 21.65 0.25 -50.30 16 8 Si 0.98 42.30 29.60 68.60 2.03 44.33 16 9 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 10 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 11 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 12 C 0.23 11.45 6.49 38.34 0.25 11.70 16 13 C -0.29 -12.69 8.80 22.45 0.20 -12.49 16 14 C -0.03 -1.09 10.03 22.23 0.22 -0.86 16 15 C -0.30 -10.58 9.89 22.45 0.22 -10.36 16 16 C 0.25 9.71 6.75 38.19 0.26 9.97 16 17 N -0.87 -25.31 9.09 -51.42 -0.47 -25.78 16 18 C -0.31 -14.52 9.11 22.56 0.21 -14.31 16 19 H 0.05 1.94 7.63 -2.39 -0.02 1.92 16 20 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 21 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.07 3.77 5.72 -2.38 -0.01 3.75 16 23 H 0.05 2.18 6.50 -2.39 -0.02 2.16 16 24 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 25 H 0.11 4.46 6.07 -2.91 -0.02 4.44 16 26 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 27 H 0.13 3.70 8.06 -2.91 -0.02 3.67 16 28 H 0.40 10.75 8.84 -92.71 -0.82 9.93 16 29 H 0.40 9.05 8.84 -92.71 -0.82 8.23 16 30 H 0.09 4.69 6.49 -2.91 -0.02 4.68 16 Total: -1.00 -62.31 251.78 3.65 -58.65 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: -0.48 Total: 31.84 kcal Atomic # 6 Polarization: -36.34 SS G_CDS: 3.66 Total: -32.68 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -1.56 Total: -102.15 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -62.31 3.65 -58.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063108417.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.920 kcal (2) G-P(sol) polarization free energy of solvation -62.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds