Wall clock time and date at job start Mon Mar 30 2020 02:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37916 * 120.46703 * 2 1 4 4 N 1.31977 * 120.84035 * 180.02562 * 3 2 1 5 5 C 1.32014 * 121.91076 * 359.97438 * 4 3 2 6 6 C 1.37869 * 120.84545 * 0.02562 * 5 4 3 7 7 C 1.39456 * 120.46343 * 180.02562 * 2 1 3 8 8 N 1.39162 * 120.86587 * 359.97438 * 7 2 1 9 9 C 1.46903 * 111.00001 * 116.02286 * 8 7 2 10 10 C 1.46900 * 111.00160 * 239.97512 * 8 7 2 11 11 C 1.50702 * 109.47150 * 170.00148 * 10 8 7 12 12 H 1.07989 * 120.00171 * 0.02562 * 11 10 8 13 13 C 1.37877 * 119.99830 * 180.02562 * 11 10 8 14 14 N 1.31522 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00157 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46868 * 59.99989 * 15 13 11 17 17 H 1.48498 * 109.47114 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47065 * 300.00450 * 15 13 11 19 19 H 1.09006 * 109.46619 * 269.98032 * 1 2 3 20 20 H 1.08998 * 109.47200 * 29.97328 * 1 2 3 21 21 H 1.09000 * 109.47218 * 149.97738 * 1 2 3 22 22 H 1.08000 * 119.57708 * 0.02759 * 3 2 1 23 23 H 1.07999 * 119.57678 * 179.97438 * 5 4 3 24 24 H 1.07994 * 120.46624 * 179.97438 * 6 5 4 25 25 H 1.09001 * 109.46904 * 59.99763 * 9 8 7 26 26 H 1.09002 * 109.47407 * 179.97438 * 9 8 7 27 27 H 1.09003 * 109.47349 * 300.00060 * 9 8 7 28 28 H 1.09002 * 109.47148 * 290.00253 * 10 8 7 29 29 H 1.09002 * 109.47102 * 50.00110 * 10 8 7 30 30 H 0.97003 * 119.99709 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2064 1.1887 0.0000 4 7 3.5261 1.1973 -0.0005 5 6 4.2312 0.0813 -0.0005 6 6 3.6081 -1.1486 -0.0006 7 6 2.2141 -1.2020 -0.0005 8 7 1.5464 -2.4230 -0.0005 9 6 1.8213 -3.1733 -1.2332 10 6 1.8964 -3.2145 1.1865 11 6 0.9816 -4.4083 1.2819 12 1 0.2172 -4.5638 0.5352 13 6 1.1208 -5.3020 2.3226 14 7 2.0516 -5.1123 3.2322 15 14 -0.0134 -6.7815 2.4413 16 1 0.1383 -7.6203 1.2253 17 1 0.3397 -7.5808 3.6419 18 1 -1.4203 -6.3190 2.5512 19 1 -0.3633 -0.0004 1.0277 20 1 -0.3633 0.8902 -0.5134 21 1 -0.3634 -0.8898 -0.5142 22 1 1.6671 2.1245 0.0005 23 1 5.3100 0.1323 -0.0014 24 1 4.1909 -2.0577 -0.0010 25 1 2.8921 -3.3605 -1.3135 26 1 1.2877 -4.1235 -1.2070 27 1 1.4884 -2.5930 -2.0938 28 1 2.9291 -3.5536 1.1056 29 1 1.7849 -2.5991 2.0793 30 1 2.1493 -5.7409 3.9646 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070045864.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:14 Heat of formation + Delta-G solvation = 36.258165 kcal Electronic energy + Delta-G solvation = -13185.930134 eV Core-core repulsion = 10981.123916 eV Total energy + Delta-G solvation = -2204.806218 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.03514 -36.65528 -32.99011 -32.45299 -30.42125 -27.38164 -26.81636 -25.24326 -23.06034 -21.57546 -20.46140 -16.83429 -16.34002 -15.86849 -14.88437 -14.71331 -14.06742 -13.80934 -13.28673 -13.18116 -12.77240 -12.29898 -12.08762 -11.92964 -11.47908 -11.21405 -11.03053 -10.84688 -10.62829 -10.14658 -9.42805 -9.15160 -8.85200 -8.53806 -8.47689 -7.59024 -6.11597 -4.14480 1.51721 1.65577 3.28237 3.32843 3.35210 4.15942 4.33766 4.69304 4.78454 5.23112 5.24447 5.34907 5.47427 5.76323 5.85535 6.06059 6.06393 6.09276 6.12518 6.27808 6.56217 6.62098 6.80511 6.98236 7.17003 7.22889 7.71381 7.89531 8.03353 8.31993 8.44628 8.91567 9.49957 10.99079 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.047670 B = 0.008439 C = 0.008035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.231768 B = 3316.940136 C = 3483.819639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.124 4.124 3 C 0.092 3.908 4 N -0.499 5.499 5 C 0.092 3.908 6 C -0.201 4.201 7 C 0.156 3.844 8 N -0.511 5.511 9 C 0.042 3.958 10 C 0.201 3.799 11 C -0.513 4.513 12 H 0.065 0.935 13 C 0.057 3.943 14 N -0.896 5.896 15 Si 0.901 3.099 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.275 1.275 19 H 0.069 0.931 20 H 0.055 0.945 21 H 0.080 0.920 22 H 0.150 0.850 23 H 0.148 0.852 24 H 0.130 0.870 25 H 0.019 0.981 26 H 0.083 0.917 27 H 0.048 0.952 28 H -0.002 1.002 29 H 0.031 0.969 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.042 7.315 -6.707 9.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.127 4.127 3 C -0.065 4.065 4 N -0.208 5.208 5 C -0.065 4.065 6 C -0.223 4.223 7 C 0.053 3.947 8 N -0.233 5.233 9 C -0.105 4.105 10 C 0.078 3.922 11 C -0.551 4.551 12 H 0.084 0.916 13 C -0.145 4.145 14 N -0.535 5.535 15 Si 0.729 3.271 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.201 1.201 19 H 0.088 0.912 20 H 0.074 0.926 21 H 0.099 0.901 22 H 0.168 0.832 23 H 0.165 0.835 24 H 0.148 0.852 25 H 0.037 0.963 26 H 0.102 0.898 27 H 0.067 0.933 28 H 0.016 0.984 29 H 0.049 0.951 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.033 8.090 -6.512 10.386 hybrid contribution 0.005 -1.905 0.280 1.926 sum -0.028 6.185 -6.232 8.781 Atomic orbital electron populations 1.20531 0.89961 1.02410 1.02536 1.20933 0.98018 0.92558 1.01234 1.22480 0.89876 0.97044 0.97102 1.67618 1.08292 1.31457 1.13479 1.22443 0.99781 0.87659 0.96611 1.22811 0.96441 0.99768 1.03278 1.19370 0.90077 0.92781 0.92441 1.59753 1.56128 1.02172 1.05224 1.22260 0.98816 0.99003 0.90373 1.19808 0.95229 0.91815 0.85397 1.21060 1.16859 1.06962 1.10259 0.91645 1.24996 0.95688 0.98321 0.95489 1.69955 1.32893 1.37221 1.13443 0.86509 0.81032 0.82148 0.77432 1.20196 1.21277 1.20076 0.91226 0.92597 0.90080 0.83247 0.83506 0.85234 0.96279 0.89788 0.93346 0.98431 0.95140 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.45 9.82 36.01 0.35 -1.10 16 2 C -0.12 -2.14 5.91 -104.28 -0.62 -2.76 16 3 C 0.09 1.46 10.85 -17.61 -0.19 1.27 16 4 N -0.50 -8.46 10.36 -13.35 -0.14 -8.59 16 5 C 0.09 1.50 11.17 -17.61 -0.20 1.30 16 6 C -0.20 -3.63 8.77 -39.25 -0.34 -3.98 16 7 C 0.16 3.04 4.66 -83.61 -0.39 2.65 16 8 N -0.51 -10.91 3.81 -180.12 -0.69 -11.59 16 9 C 0.04 0.80 9.21 60.07 0.55 1.36 16 10 C 0.20 5.15 4.32 -4.97 -0.02 5.12 16 11 C -0.51 -14.01 8.46 -34.44 -0.29 -14.30 16 12 H 0.07 1.75 7.12 -52.49 -0.37 1.37 16 13 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -26.23 13.29 55.43 0.74 -25.49 16 15 Si 0.90 21.18 29.54 -169.99 -5.02 16.15 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 20 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 21 H 0.08 1.32 7.55 -51.93 -0.39 0.92 16 22 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 23 H 0.15 1.95 8.06 -52.49 -0.42 1.53 16 24 H 0.13 2.32 7.30 -52.49 -0.38 1.94 16 25 H 0.02 0.35 7.42 -51.93 -0.39 -0.04 16 26 H 0.08 1.66 6.76 -51.93 -0.35 1.30 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.00 -0.06 7.55 -51.93 -0.39 -0.45 16 29 H 0.03 0.86 8.06 -51.93 -0.42 0.44 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 257.50 15.07 3.88 3.88 Total: -1.00 -29.73 257.50 -6.41 -36.14 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -3.94 Total: -1.55 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -1.24 Total: -8.95 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.09 Total: -45.68 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.73 -6.41 -36.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070045864.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.400 kcal (2) G-P(sol) polarization free energy of solvation -29.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds