Wall clock time and date at job start Mon Mar 30 2020 02:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31719 * 119.87288 * 2 1 4 4 C 1.33909 * 119.81505 * 180.02562 * 3 2 1 5 5 C 1.41349 * 120.20966 * 180.02562 * 4 3 2 6 6 H 1.08004 * 120.00110 * 186.90715 * 5 4 3 7 7 C 1.40064 * 120.00238 * 6.91426 * 5 4 3 8 8 N 1.30719 * 120.00282 * 353.07521 * 7 5 4 9 9 Si 1.86799 * 120.00120 * 173.08060 * 7 5 4 10 10 H 1.48501 * 109.47266 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47449 * 120.00111 * 9 7 5 12 12 H 1.48506 * 109.46863 * 239.99807 * 9 7 5 13 13 C 1.40802 * 119.57540 * 0.02562 * 4 3 2 14 14 N 1.31801 * 119.74462 * 359.74658 * 13 4 3 15 15 C 1.32365 * 120.17795 * 0.52693 * 14 13 4 16 16 C 1.50696 * 119.78418 * 179.72502 * 15 14 13 17 17 C 1.52993 * 109.46998 * 291.54061 * 16 15 14 18 18 C 1.52998 * 109.47112 * 51.54809 * 16 15 14 19 19 H 1.09005 * 109.46674 * 264.13709 * 1 2 3 20 20 H 1.09002 * 109.46958 * 24.13221 * 1 2 3 21 21 H 1.08997 * 109.47570 * 144.14010 * 1 2 3 22 22 H 0.96992 * 120.00836 * 179.97438 * 8 7 5 23 23 H 1.08008 * 120.12432 * 180.02562 * 13 4 3 24 24 H 1.09008 * 109.47013 * 171.54547 * 16 15 14 25 25 H 1.08994 * 109.47449 * 300.00169 * 17 16 15 26 26 H 1.09002 * 109.47008 * 180.02562 * 17 16 15 27 27 H 1.09003 * 109.47250 * 60.00619 * 17 16 15 28 28 H 1.09003 * 109.46957 * 299.99272 * 18 16 15 29 29 H 1.08994 * 109.47452 * 59.99729 * 18 16 15 30 30 H 1.09002 * 109.47041 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1631 1.1422 0.0000 4 6 3.5022 1.1408 -0.0005 5 6 4.2146 2.3616 0.0000 6 1 5.2887 2.3601 -0.1129 7 6 3.5277 3.5734 0.1471 8 7 2.2206 3.5878 0.1479 9 14 4.4794 5.1689 0.3420 10 1 5.9364 4.8835 0.3088 11 1 4.1300 6.0924 -0.7672 12 1 4.1284 5.7992 1.6400 13 6 4.1959 -0.0844 -0.0016 14 7 3.5222 -1.2173 0.0030 15 6 2.1987 -1.2044 -0.0020 16 6 1.4374 -2.5049 -0.0030 17 6 1.6418 -3.2144 -1.3429 18 6 1.9497 -3.3966 1.1298 19 1 -0.3633 -0.1050 1.0224 20 1 -0.3633 0.9379 -0.4202 21 1 -0.3634 -0.8328 -0.6020 22 1 1.7448 4.4268 0.2502 23 1 5.2759 -0.0959 -0.0016 24 1 0.3760 -2.3047 0.1439 25 1 1.2768 -2.5792 -2.1499 26 1 1.0908 -4.1549 -1.3438 27 1 2.7032 -3.4147 -1.4898 28 1 3.0111 -3.5968 0.9829 29 1 1.8040 -2.8911 2.0844 30 1 1.3988 -4.3371 1.1294 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074308564.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:00 Heat of formation + Delta-G solvation = 17.374415 kcal Electronic energy + Delta-G solvation = -13272.506765 eV Core-core repulsion = 11066.881686 eV Total energy + Delta-G solvation = -2205.625079 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.20792 -35.18636 -33.47121 -32.65119 -30.27874 -27.39154 -26.53387 -25.49228 -22.69687 -20.91958 -19.60913 -17.44745 -16.00979 -15.27892 -14.69080 -13.71604 -13.67327 -13.46446 -12.73255 -12.33861 -12.16912 -11.85736 -11.70017 -11.57753 -11.34640 -11.27966 -10.82785 -10.57076 -10.46421 -10.31113 -9.91149 -9.66356 -9.41290 -8.89299 -7.58260 -7.35335 -6.47907 -4.63964 2.51962 2.97568 3.02786 3.07392 3.19858 3.85285 4.62468 5.48629 5.56936 5.62550 5.73957 5.91355 5.97852 6.14032 6.15104 6.29766 6.41446 6.43913 6.48276 6.53311 6.67685 6.76544 6.86594 6.94160 7.00137 7.11434 7.38108 7.72974 8.07093 8.45894 8.69608 9.32278 9.91121 10.15653 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.057203 B = 0.009053 C = 0.008255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.367260 B = 3092.205174 C = 3391.172482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.111 3.889 3 N -0.454 5.454 4 C 0.207 3.793 5 C -0.417 4.417 6 H 0.089 0.911 7 C 0.066 3.934 8 N -0.711 5.711 9 Si 0.911 3.089 10 H -0.258 1.258 11 H -0.272 1.272 12 H -0.272 1.272 13 C -0.068 4.068 14 N -0.421 5.421 15 C -0.085 4.085 16 C -0.020 4.020 17 C -0.134 4.134 18 C -0.132 4.132 19 H 0.060 0.940 20 H 0.067 0.933 21 H 0.060 0.940 22 H 0.275 0.725 23 H 0.131 0.869 24 H 0.070 0.930 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.044 0.956 30 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.158 -3.866 0.044 4.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.038 4.038 3 N -0.172 5.172 4 C 0.081 3.919 5 C -0.449 4.449 6 H 0.108 0.892 7 C -0.160 4.160 8 N -0.332 5.332 9 Si 0.735 3.265 10 H -0.182 1.182 11 H -0.197 1.197 12 H -0.197 1.197 13 C -0.238 4.238 14 N -0.132 5.132 15 C -0.224 4.224 16 C -0.040 4.040 17 C -0.192 4.192 18 C -0.190 4.190 19 H 0.079 0.921 20 H 0.086 0.914 21 H 0.079 0.921 22 H 0.086 0.914 23 H 0.148 0.852 24 H 0.088 0.912 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.362 -3.713 0.061 4.401 hybrid contribution 0.486 0.855 0.124 0.991 sum -1.876 -2.858 0.185 3.424 Atomic orbital electron populations 1.20538 0.91386 1.01875 1.01121 1.21878 0.96519 0.90431 0.94944 1.69393 1.07622 1.24319 1.15838 1.19418 0.89153 0.93392 0.89930 1.19657 0.94998 0.89340 1.40919 0.89244 1.26140 0.94994 1.01209 0.93661 1.70099 1.07725 1.27755 1.27650 0.86210 0.80927 0.80680 0.78717 1.18183 1.19721 1.19695 1.23108 0.98980 0.89035 1.12655 1.67404 1.07914 1.30759 1.07139 1.20800 0.90642 0.93924 1.16989 1.19629 0.97733 0.91899 0.94699 1.21754 1.01635 0.98643 0.97194 1.21704 1.01497 0.97759 0.98043 0.92079 0.91389 0.92074 0.91361 0.85170 0.91210 0.93524 0.93843 0.92592 0.92228 0.93663 0.94051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.78 9.25 36.01 0.33 -1.45 16 2 C 0.11 2.72 6.79 -82.40 -0.56 2.16 16 3 N -0.45 -12.55 8.00 -7.19 -0.06 -12.60 16 4 C 0.21 5.71 6.54 -84.81 -0.55 5.15 16 5 C -0.42 -10.98 9.15 -37.71 -0.35 -11.33 16 6 H 0.09 2.17 7.86 -52.48 -0.41 1.76 16 7 C 0.07 1.65 5.49 -17.34 -0.10 1.56 16 8 N -0.71 -18.62 11.52 55.55 0.64 -17.98 16 9 Si 0.91 18.15 29.57 -169.99 -5.03 13.13 16 10 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 11 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 12 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 13 C -0.07 -1.74 10.99 -16.60 -0.18 -1.92 16 14 N -0.42 -10.40 9.90 -8.58 -0.08 -10.48 16 15 C -0.08 -1.96 5.49 -82.12 -0.45 -2.41 16 16 C -0.02 -0.37 2.87 -91.78 -0.26 -0.63 16 17 C -0.13 -2.26 9.17 37.15 0.34 -1.92 16 18 C -0.13 -2.25 9.02 37.16 0.34 -1.92 16 19 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 20 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 21 H 0.06 1.03 6.59 -51.93 -0.34 0.68 16 22 H 0.28 6.47 8.29 -40.82 -0.34 6.13 16 23 H 0.13 3.04 8.06 -52.48 -0.42 2.61 16 24 H 0.07 1.18 5.77 -51.92 -0.30 0.88 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 1.08 7.90 -51.93 -0.41 0.67 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 256.54 15.07 3.87 3.87 Total: -1.00 -29.21 256.54 -6.09 -35.29 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -3.98 Total: 1.49 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -1.44 Total: -12.71 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.50 Total: -41.06 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.13 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.21 -6.09 -35.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074308564.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.667 kcal (2) G-P(sol) polarization free energy of solvation -29.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds