Wall clock time and date at job start Mon Mar 30 2020 02:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52860 * 109.97836 * 2 1 4 4 C 1.53668 * 107.10874 * 65.11566 * 3 2 1 5 5 C 1.52572 * 110.22633 * 67.64045 * 4 3 2 6 6 C 1.50507 * 111.57679 * 314.89704 * 5 4 3 7 7 C 1.29401 * 121.69966 * 13.68679 * 6 5 4 8 8 C 1.51861 * 129.35070 * 169.92802 * 7 6 5 9 9 C 1.55787 * 101.66468 * 226.98686 * 8 7 6 10 10 C 1.53300 * 110.66311 * 235.41552 * 2 1 3 11 11 H 1.09000 * 110.18691 * 3.91236 * 10 2 1 12 12 C 1.50703 * 110.18467 * 125.67199 * 10 2 1 13 13 H 1.08000 * 120.00002 * 65.14471 * 12 10 2 14 14 C 1.37881 * 120.00325 * 245.13762 * 12 10 2 15 15 N 1.31520 * 119.99617 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 120.00373 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46805 * 60.00192 * 16 14 12 18 18 H 1.48492 * 109.46868 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.46960 * 300.00167 * 16 14 12 20 20 H 1.08995 * 109.47205 * 60.70500 * 1 2 3 21 21 H 1.09000 * 109.46788 * 180.70312 * 1 2 3 22 22 H 1.09007 * 109.47071 * 300.70196 * 1 2 3 23 23 H 1.09006 * 109.93367 * 305.69410 * 3 2 1 24 24 H 1.08994 * 109.93960 * 184.53906 * 3 2 1 25 25 H 1.09000 * 109.34149 * 187.87162 * 4 3 2 26 26 H 1.08999 * 109.34614 * 307.56009 * 4 3 2 27 27 H 1.09001 * 109.06057 * 75.43574 * 5 4 3 28 28 H 1.09002 * 109.05975 * 194.42594 * 5 4 3 29 29 H 1.08004 * 119.15445 * 193.66668 * 6 5 4 30 30 H 1.08995 * 110.98567 * 344.99805 * 8 7 6 31 31 H 1.09002 * 110.98677 * 108.80159 * 8 7 6 32 32 H 1.09002 * 110.59417 * 202.30919 * 9 8 7 33 33 H 1.09007 * 110.77789 * 79.40273 * 9 8 7 34 34 H 0.97000 * 120.00108 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0523 1.4366 0.0000 4 6 1.6259 2.0726 1.3323 5 6 2.3672 1.4144 2.4921 6 6 2.3774 -0.0850 2.3628 7 6 2.0486 -0.6745 1.2587 8 6 2.1903 -2.1351 0.8678 9 6 2.8126 -2.0212 -0.5558 10 6 2.0710 -0.8142 -1.1809 11 1 1.2487 -1.1609 -1.8068 12 6 3.0263 0.0209 -1.9941 13 1 3.9574 0.3533 -1.5596 14 6 2.7116 0.3604 -3.2928 15 7 1.5774 -0.0441 -3.8218 16 14 3.8960 1.3949 -4.3011 17 1 5.1949 0.6851 -4.4205 18 1 3.3279 1.6199 -5.6544 19 1 4.1064 2.7024 -3.6294 20 1 -0.3633 0.5028 -0.8962 21 1 -0.3633 -1.0276 0.0126 22 1 -0.3633 0.5247 0.8837 23 1 1.6174 1.9902 -0.8322 24 1 3.1392 1.4370 -0.0811 25 1 1.8569 3.1377 1.3142 26 1 0.5530 1.9381 1.4697 27 1 3.3949 1.7771 2.5094 28 1 1.8781 1.6867 3.4275 29 1 2.6669 -0.6846 3.2132 30 1 2.8645 -2.6572 1.5466 31 1 1.2176 -2.6258 0.8321 32 1 2.6228 -2.9275 -1.1309 33 1 3.8830 -1.8239 -0.4953 34 1 1.3558 0.1951 -4.7354 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075565745.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:06 Heat of formation + Delta-G solvation = -10.732420 kcal Electronic energy + Delta-G solvation = -14221.890620 eV Core-core repulsion = 12118.587081 eV Total energy + Delta-G solvation = -2103.303539 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 206.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.27692 -34.34764 -32.56994 -31.26919 -28.76777 -26.73735 -25.90337 -23.34591 -21.27777 -20.59596 -19.03209 -16.57269 -15.72160 -14.86900 -14.32079 -13.87318 -13.66829 -13.33835 -12.64465 -12.31972 -11.96060 -11.76270 -11.54530 -11.41606 -10.94035 -10.78974 -10.69266 -10.51107 -10.29616 -10.16539 -9.71527 -9.33408 -9.04647 -8.77408 -8.64131 -8.39766 -8.00401 -5.96777 -3.95800 3.00900 3.33692 3.38588 3.41431 4.46967 5.17686 5.36525 5.48683 5.62424 5.82755 5.96818 6.00478 6.17766 6.19844 6.32083 6.39055 6.40083 6.43926 6.50076 6.55589 6.72528 6.83081 6.93571 6.98247 7.02528 7.18070 7.29937 7.43334 7.50823 7.68520 7.87565 7.89357 8.02953 8.55760 9.12266 9.64219 11.12440 Molecular weight = 206.14amu Principal moments of inertia in cm(-1) A = 0.034747 B = 0.012642 C = 0.011284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.634810 B = 2214.347123 C = 2480.784119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.032 4.032 3 C -0.078 4.078 4 C -0.131 4.131 5 C -0.072 4.072 6 C -0.188 4.188 7 C -0.092 4.092 8 C -0.096 4.096 9 C -0.113 4.113 10 C 0.039 3.961 11 H 0.071 0.929 12 C -0.496 4.496 13 H 0.052 0.948 14 C 0.065 3.935 15 N -0.896 5.896 16 Si 0.884 3.116 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.277 1.277 20 H 0.057 0.943 21 H 0.041 0.959 22 H 0.038 0.962 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.413 0.586 8.549 8.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.033 4.033 3 C -0.116 4.116 4 C -0.169 4.169 5 C -0.109 4.109 6 C -0.206 4.206 7 C -0.092 4.092 8 C -0.133 4.133 9 C -0.151 4.151 10 C 0.021 3.979 11 H 0.089 0.911 12 C -0.534 4.534 13 H 0.070 0.930 14 C -0.137 4.137 15 N -0.534 5.534 16 Si 0.712 3.288 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.202 1.202 20 H 0.076 0.924 21 H 0.061 0.939 22 H 0.056 0.944 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.523 0.605 8.354 8.392 hybrid contribution 0.662 0.532 -0.536 1.004 sum 0.139 1.137 7.818 7.902 Atomic orbital electron populations 1.21787 0.95712 1.00264 1.00349 1.20539 0.93614 0.95562 0.93546 1.21434 1.01185 0.95114 0.93818 1.21816 0.99930 0.98516 0.96593 1.20199 0.99903 0.92923 0.97897 1.21265 1.06789 0.95402 0.97119 1.22010 0.95876 0.96421 0.94855 1.21693 0.99927 0.93288 0.98392 1.22827 0.99749 0.99951 0.92597 1.19539 0.96469 0.90606 0.91311 0.91084 1.21012 1.04011 1.31642 0.96753 0.92965 1.24955 0.95035 0.95861 0.97803 1.69888 1.22605 1.46128 1.14807 0.86784 0.81483 0.81081 0.79438 1.20348 1.21425 1.20237 0.92390 0.93940 0.94353 0.92085 0.91551 0.93251 0.92465 0.92178 0.92948 0.88791 0.93230 0.91470 0.93496 0.92709 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.48 8.08 37.16 0.30 -2.18 16 2 C -0.03 -0.69 0.64 -154.97 -0.10 -0.79 16 3 C -0.08 -1.65 3.77 -26.46 -0.10 -1.75 16 4 C -0.13 -2.28 5.82 -26.60 -0.15 -2.43 16 5 C -0.07 -1.16 6.12 -28.20 -0.17 -1.34 16 6 C -0.19 -3.29 9.99 -35.68 -0.36 -3.65 16 7 C -0.09 -1.78 4.93 -99.44 -0.49 -2.27 16 8 C -0.10 -1.79 6.80 -25.82 -0.18 -1.96 16 9 C -0.11 -2.45 6.43 -24.28 -0.16 -2.61 16 10 C 0.04 0.96 2.88 -90.65 -0.26 0.70 16 11 H 0.07 1.93 6.56 -51.93 -0.34 1.59 16 12 C -0.50 -13.23 6.23 -34.44 -0.21 -13.45 16 13 H 0.05 1.40 7.08 -52.49 -0.37 1.03 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.90 -25.61 12.64 55.43 0.70 -24.91 16 16 Si 0.88 21.22 29.54 -169.99 -5.02 16.20 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 21 H 0.04 0.81 8.11 -51.93 -0.42 0.39 16 22 H 0.04 0.69 6.24 -51.93 -0.32 0.36 16 23 H 0.06 1.39 8.08 -51.93 -0.42 0.97 16 24 H 0.07 1.50 6.73 -51.93 -0.35 1.15 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.97 6.03 -51.93 -0.31 0.66 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.09 1.48 8.06 -52.48 -0.42 1.06 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.19 8.11 -51.93 -0.42 0.77 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 260.65 15.07 3.93 3.93 Total: -1.00 -27.34 260.65 -7.83 -35.17 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -5.46 Total: -0.33 kcal Atomic # 6 Polarization: -28.07 SS G_CDS: -1.98 Total: -30.05 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.70 Total: -24.91 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -27.34 -7.83 -35.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075565745.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.438 kcal (2) G-P(sol) polarization free energy of solvation -27.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds