Wall clock time and date at job start Mon Mar 30 2020 02:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52860 * 109.97836 * 2 1 4 4 C 1.53668 * 107.10874 * 65.11566 * 3 2 1 5 5 C 1.52572 * 110.22633 * 67.64045 * 4 3 2 6 6 C 1.50507 * 111.57679 * 314.89704 * 5 4 3 7 7 C 1.29401 * 121.69966 * 13.68679 * 6 5 4 8 8 C 1.51861 * 129.35070 * 169.92802 * 7 6 5 9 9 C 1.55787 * 101.66468 * 226.98686 * 8 7 6 10 10 C 1.53300 * 110.66311 * 235.41552 * 2 1 3 11 11 H 1.09000 * 110.18691 * 3.91236 * 10 2 1 12 12 C 1.50703 * 110.18467 * 125.67199 * 10 2 1 13 13 H 1.08000 * 120.00002 * 65.14471 * 12 10 2 14 14 C 1.37881 * 120.00325 * 245.13762 * 12 10 2 15 15 N 1.31520 * 119.99617 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 120.00373 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46805 * 60.00192 * 16 14 12 18 18 H 1.48492 * 109.46868 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.46960 * 300.00167 * 16 14 12 20 20 H 1.08995 * 109.47205 * 60.70500 * 1 2 3 21 21 H 1.09000 * 109.46788 * 180.70312 * 1 2 3 22 22 H 1.09007 * 109.47071 * 300.70196 * 1 2 3 23 23 H 1.09006 * 109.93367 * 305.69410 * 3 2 1 24 24 H 1.08994 * 109.93960 * 184.53906 * 3 2 1 25 25 H 1.09000 * 109.34149 * 187.87162 * 4 3 2 26 26 H 1.08999 * 109.34614 * 307.56009 * 4 3 2 27 27 H 1.09001 * 109.06057 * 75.43574 * 5 4 3 28 28 H 1.09002 * 109.05975 * 194.42594 * 5 4 3 29 29 H 1.08004 * 119.15445 * 193.66668 * 6 5 4 30 30 H 1.08995 * 110.98567 * 344.99805 * 8 7 6 31 31 H 1.09002 * 110.98677 * 108.80159 * 8 7 6 32 32 H 1.09002 * 110.59417 * 202.30919 * 9 8 7 33 33 H 1.09007 * 110.77789 * 79.40273 * 9 8 7 34 34 H 0.97000 * 120.00108 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0523 1.4366 0.0000 4 6 1.6259 2.0726 1.3323 5 6 2.3672 1.4144 2.4921 6 6 2.3774 -0.0850 2.3628 7 6 2.0486 -0.6745 1.2587 8 6 2.1903 -2.1351 0.8678 9 6 2.8126 -2.0212 -0.5558 10 6 2.0710 -0.8142 -1.1809 11 1 1.2487 -1.1609 -1.8068 12 6 3.0263 0.0209 -1.9941 13 1 3.9574 0.3533 -1.5596 14 6 2.7116 0.3604 -3.2928 15 7 1.5774 -0.0441 -3.8218 16 14 3.8960 1.3949 -4.3011 17 1 5.1949 0.6851 -4.4205 18 1 3.3279 1.6199 -5.6544 19 1 4.1064 2.7024 -3.6294 20 1 -0.3633 0.5028 -0.8962 21 1 -0.3633 -1.0276 0.0126 22 1 -0.3633 0.5247 0.8837 23 1 1.6174 1.9902 -0.8322 24 1 3.1392 1.4370 -0.0811 25 1 1.8569 3.1377 1.3142 26 1 0.5530 1.9381 1.4697 27 1 3.3949 1.7771 2.5094 28 1 1.8781 1.6867 3.4275 29 1 2.6669 -0.6846 3.2132 30 1 2.8645 -2.6572 1.5466 31 1 1.2176 -2.6258 0.8321 32 1 2.6228 -2.9275 -1.1309 33 1 3.8830 -1.8239 -0.4953 34 1 1.3558 0.1951 -4.7354 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075565745.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:05 Heat of formation + Delta-G solvation = -23.950746 kcal Electronic energy + Delta-G solvation = -14222.463810 eV Core-core repulsion = 12118.587081 eV Total energy + Delta-G solvation = -2103.876729 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 206.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.86901 -35.96201 -34.44424 -32.92122 -30.41887 -28.50102 -27.47597 -25.23806 -22.86419 -22.05585 -20.77435 -18.53588 -17.33750 -16.67823 -15.99529 -15.49801 -15.11343 -14.95386 -14.24741 -14.05426 -13.61352 -13.44764 -13.19027 -13.06657 -12.79472 -12.43191 -12.30225 -12.26123 -12.03934 -11.84972 -11.34416 -11.10929 -10.77552 -10.56286 -10.42793 -10.40136 -9.43693 -8.07145 -6.10495 1.39933 1.40109 1.47687 1.58932 2.44699 3.21811 3.76367 4.02773 4.21103 4.35908 4.48067 4.56860 4.62462 4.68969 4.74376 4.88034 4.90553 4.95389 5.05023 5.13386 5.15740 5.25883 5.31803 5.34560 5.42102 5.51876 5.62117 5.68375 5.79242 5.87204 5.96218 6.11208 6.42321 6.53357 7.03526 7.51058 9.01858 Molecular weight = 206.14amu Principal moments of inertia in cm(-1) A = 0.034747 B = 0.012642 C = 0.011284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.634810 B = 2214.347123 C = 2480.784119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.035 4.035 3 C -0.076 4.076 4 C -0.125 4.125 5 C -0.075 4.075 6 C -0.166 4.166 7 C -0.119 4.119 8 C -0.083 4.083 9 C -0.113 4.113 10 C 0.028 3.972 11 H 0.033 0.967 12 C -0.497 4.497 13 H 0.045 0.955 14 C 0.013 3.987 15 N -0.930 5.930 16 Si 0.940 3.060 17 H -0.272 1.272 18 H -0.287 1.287 19 H -0.272 1.272 20 H 0.030 0.970 21 H 0.045 0.955 22 H 0.062 0.938 23 H 0.028 0.972 24 H 0.045 0.955 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.123 0.877 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.045 0.955 34 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.192 1.004 11.089 11.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.035 4.035 3 C -0.114 4.114 4 C -0.163 4.163 5 C -0.112 4.112 6 C -0.184 4.184 7 C -0.119 4.119 8 C -0.120 4.120 9 C -0.151 4.151 10 C 0.010 3.990 11 H 0.051 0.949 12 C -0.536 4.536 13 H 0.063 0.937 14 C -0.184 4.184 15 N -0.570 5.570 16 Si 0.767 3.233 17 H -0.198 1.198 18 H -0.213 1.213 19 H -0.197 1.197 20 H 0.049 0.951 21 H 0.064 0.936 22 H 0.081 0.919 23 H 0.047 0.953 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.140 0.860 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.093 1.024 10.907 10.955 hybrid contribution 0.492 0.414 -1.288 1.440 sum 0.586 1.438 9.619 9.743 Atomic orbital electron populations 1.21699 0.95121 1.00458 1.00092 1.20366 0.94196 0.95324 0.93644 1.21307 0.99511 0.95256 0.95286 1.21754 1.00427 0.99331 0.94758 1.20300 1.00641 0.91845 0.98426 1.21675 1.03352 0.96436 0.96917 1.21894 0.98926 0.96399 0.94716 1.21571 1.00534 0.93586 0.96291 1.22702 0.99023 0.98441 0.94952 1.19535 0.95237 0.92058 0.92204 0.94883 1.21265 1.03921 1.31257 0.97122 0.93675 1.25635 0.96505 0.97275 0.99014 1.70025 1.24279 1.47795 1.14944 0.85877 0.79670 0.79781 0.78002 1.19770 1.21280 1.19684 0.95065 0.93628 0.91938 0.95327 0.93626 0.91668 0.91928 0.91193 0.89637 0.85957 0.90634 0.90797 0.93876 0.93580 0.93294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.66 8.08 71.98 0.58 -4.08 16 2 C -0.03 -1.48 0.64 -52.48 -0.03 -1.52 16 3 C -0.08 -3.21 3.77 30.77 0.12 -3.09 16 4 C -0.13 -4.03 5.82 30.68 0.18 -3.85 16 5 C -0.08 -2.09 6.12 29.65 0.18 -1.91 16 6 C -0.17 -5.09 9.99 27.21 0.27 -4.81 16 7 C -0.12 -4.33 4.93 -14.09 -0.07 -4.40 16 8 C -0.08 -2.91 6.80 31.18 0.21 -2.70 16 9 C -0.11 -4.91 6.43 32.18 0.21 -4.71 16 10 C 0.03 1.43 2.88 -10.81 -0.03 1.40 16 11 H 0.03 1.88 6.56 -2.39 -0.02 1.87 16 12 C -0.50 -27.34 6.23 25.60 0.16 -27.18 16 13 H 0.05 2.49 7.08 -2.91 -0.02 2.47 16 14 C 0.01 0.73 5.46 84.65 0.46 1.20 16 15 N -0.93 -55.36 12.64 21.45 0.27 -55.09 16 16 Si 0.94 44.51 29.54 68.60 2.03 46.54 16 17 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 19 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 20 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 21 H 0.04 1.74 8.11 -2.39 -0.02 1.72 16 22 H 0.06 2.15 6.24 -2.38 -0.01 2.13 16 23 H 0.03 1.34 8.08 -2.38 -0.02 1.32 16 24 H 0.04 2.06 6.73 -2.39 -0.02 2.05 16 25 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.06 1.94 6.03 -2.39 -0.01 1.93 16 27 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.12 3.13 8.06 -2.91 -0.02 3.11 16 30 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.07 2.47 8.11 -2.39 -0.02 2.46 16 32 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.05 2.03 7.85 -2.38 -0.02 2.02 16 34 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -60.13 260.65 5.58 -54.55 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 1.05 Total: 9.66 kcal Atomic # 6 Polarization: -57.89 SS G_CDS: 2.24 Total: -55.65 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.27 Total: -55.09 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -60.13 5.58 -54.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075565745.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.597 kcal (2) G-P(sol) polarization free energy of solvation -60.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds