Wall clock time and date at job start Mon Mar 30 2020 02:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.51306 * 109.18257 * 2 1 4 4 C 1.52691 * 111.91136 * 139.29226 * 3 2 1 5 5 C 1.53930 * 109.20203 * 303.24540 * 4 3 2 6 6 C 1.51578 * 106.85100 * 64.96837 * 5 4 3 7 7 C 1.29921 * 117.42763 * 324.90980 * 6 5 4 8 8 C 1.51836 * 128.35371 * 170.93226 * 7 6 5 9 9 C 1.54724 * 103.89970 * 222.64952 * 8 7 6 10 10 C 1.53561 * 108.50543 * 236.77635 * 2 1 3 11 11 H 1.09005 * 110.23359 * 149.13165 * 10 2 1 12 12 C 1.50704 * 110.23628 * 27.15343 * 10 2 1 13 13 H 1.07994 * 119.99849 * 294.79101 * 12 10 2 14 14 C 1.37880 * 119.99838 * 114.79048 * 12 10 2 15 15 N 1.31517 * 119.99802 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 119.99672 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47068 * 90.00287 * 16 14 12 18 18 H 1.48504 * 109.47160 * 209.99809 * 16 14 12 19 19 H 1.48500 * 109.47363 * 330.00244 * 16 14 12 20 20 H 1.08992 * 109.47393 * 290.10913 * 1 2 3 21 21 H 1.08999 * 109.46555 * 50.11201 * 1 2 3 22 22 H 1.08995 * 109.47284 * 170.10545 * 1 2 3 23 23 H 1.09007 * 108.99433 * 259.91505 * 3 2 1 24 24 H 1.08999 * 108.99898 * 18.66337 * 3 2 1 25 25 H 1.08997 * 109.49013 * 63.34316 * 4 3 2 26 26 H 1.09001 * 109.48994 * 183.38514 * 4 3 2 27 27 H 1.09001 * 110.12969 * 305.59159 * 5 4 3 28 28 H 1.09001 * 109.93000 * 184.24033 * 5 4 3 29 29 H 1.08003 * 121.28804 * 145.17719 * 6 5 4 30 30 H 1.08997 * 110.53967 * 341.25412 * 8 7 6 31 31 H 1.08995 * 110.53889 * 104.04671 * 8 7 6 32 32 H 1.09003 * 110.14459 * 217.66724 * 9 8 7 33 33 H 1.09005 * 110.14939 * 95.94158 * 9 8 7 34 34 H 0.97005 * 119.99333 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0272 1.4291 0.0000 4 6 3.2286 1.6144 0.9239 5 6 2.8481 1.1640 2.3458 6 6 2.5776 -0.3259 2.2772 7 6 2.0255 -0.7847 1.1943 8 6 1.8180 -2.2313 0.7826 9 6 2.1943 -2.2484 -0.7181 10 6 2.0174 -0.7979 -1.2182 11 1 2.9696 -0.4021 -1.5717 12 6 0.9897 -0.7477 -2.3193 13 1 0.0228 -1.2071 -2.1769 14 6 1.2840 -0.1152 -3.5086 15 7 2.4614 0.4447 -3.6818 16 14 0.0104 -0.0536 -4.8737 17 1 -0.8230 1.1657 -4.7185 18 1 0.6970 -0.0195 -6.1901 19 1 -0.8552 -1.2579 -4.7979 20 1 -0.3634 0.3533 0.9649 21 1 -0.3632 0.6590 -0.7885 22 1 -0.3633 -1.0123 -0.1766 23 1 2.3142 1.7048 -1.0148 24 1 1.2215 2.0850 0.3298 25 1 4.0631 1.0149 0.5600 26 1 3.5160 2.6657 0.9403 27 1 1.9529 1.6893 2.6788 28 1 3.6725 1.3610 3.0311 29 1 2.8301 -0.9802 3.0985 30 1 2.4770 -2.8887 1.3497 31 1 0.7764 -2.5221 0.9190 32 1 1.5294 -2.9175 -1.2643 33 1 3.2302 -2.5644 -0.8419 34 1 2.6685 0.8894 -4.5187 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075565754.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:09 Heat of formation + Delta-G solvation = -24.354772 kcal Electronic energy + Delta-G solvation = -14216.129316 eV Core-core repulsion = 12112.235067 eV Total energy + Delta-G solvation = -2103.894249 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 206.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.93003 -36.09173 -34.38289 -32.94141 -30.43090 -28.73232 -26.86846 -25.52367 -22.98152 -22.07842 -20.77368 -18.29706 -17.54549 -16.63192 -15.97630 -15.67735 -15.32384 -14.52168 -14.44734 -14.00021 -13.86167 -13.20115 -13.13156 -12.92182 -12.80971 -12.64223 -12.34134 -12.28473 -11.90047 -11.63022 -11.32794 -11.14488 -10.85296 -10.63948 -10.48000 -10.38990 -9.46577 -8.06535 -6.10576 1.39019 1.40840 1.49660 1.55618 2.44923 3.22346 3.74468 4.06610 4.18631 4.38426 4.44905 4.53945 4.59058 4.68923 4.75260 4.84095 4.94668 4.96905 5.07368 5.10505 5.13689 5.24889 5.28842 5.40150 5.45112 5.51672 5.66650 5.71657 5.73688 5.91732 5.98222 6.04878 6.38572 6.53939 7.04634 7.51749 9.02541 Molecular weight = 206.14amu Principal moments of inertia in cm(-1) A = 0.040988 B = 0.011793 C = 0.010688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.961004 B = 2373.652161 C = 2619.219956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.031 4.031 3 C -0.100 4.100 4 C -0.111 4.111 5 C -0.076 4.076 6 C -0.168 4.168 7 C -0.122 4.122 8 C -0.082 4.082 9 C -0.117 4.117 10 C 0.035 3.965 11 H 0.024 0.976 12 C -0.500 4.500 13 H 0.054 0.946 14 C 0.011 3.989 15 N -0.929 5.929 16 Si 0.943 3.057 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.267 1.267 20 H 0.042 0.958 21 H 0.037 0.963 22 H 0.043 0.957 23 H 0.033 0.967 24 H 0.051 0.949 25 H 0.042 0.958 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.133 0.867 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.036 0.964 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.819 -0.254 10.610 10.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.032 4.032 3 C -0.138 4.138 4 C -0.149 4.149 5 C -0.113 4.113 6 C -0.185 4.185 7 C -0.122 4.122 8 C -0.119 4.119 9 C -0.155 4.155 10 C 0.016 3.984 11 H 0.043 0.957 12 C -0.538 4.538 13 H 0.072 0.928 14 C -0.186 4.186 15 N -0.570 5.570 16 Si 0.769 3.231 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.192 1.192 20 H 0.061 0.939 21 H 0.056 0.944 22 H 0.062 0.938 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.107 0.893 29 H 0.151 0.849 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.733 -0.165 10.439 10.466 hybrid contribution -0.488 0.078 -1.482 1.562 sum -1.221 -0.087 8.957 9.040 Atomic orbital electron populations 1.21585 0.94622 1.00598 0.98633 1.19903 0.95458 0.93917 0.93878 1.21080 0.97622 0.96314 0.98764 1.21593 0.97063 1.00644 0.95564 1.20869 1.01753 0.92826 0.95830 1.22254 1.01502 0.97473 0.97299 1.21937 0.98676 0.96376 0.95214 1.21339 1.01159 0.93941 0.95456 1.22461 0.98619 0.99388 0.95053 1.19507 0.96246 0.90913 0.91712 0.95706 1.21424 0.99998 1.33538 0.98871 0.92827 1.25684 0.96748 0.95544 1.00621 1.70055 1.22449 1.38504 1.25977 0.85792 0.79657 0.78587 0.79065 1.20353 1.21408 1.19160 0.93873 0.94374 0.93763 0.94800 0.93037 0.93947 0.91285 0.90719 0.89280 0.84946 0.90864 0.90905 0.93310 0.94503 0.93385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.98 6.66 71.98 0.48 -3.50 16 2 C -0.03 -1.33 0.73 -53.12 -0.04 -1.37 16 3 C -0.10 -4.18 5.16 29.94 0.15 -4.03 16 4 C -0.11 -3.81 5.80 30.81 0.18 -3.63 16 5 C -0.08 -2.10 6.27 30.44 0.19 -1.91 16 6 C -0.17 -5.07 10.11 27.04 0.27 -4.79 16 7 C -0.12 -4.43 4.92 -14.84 -0.07 -4.50 16 8 C -0.08 -2.90 6.21 30.80 0.19 -2.71 16 9 C -0.12 -5.10 6.50 31.67 0.21 -4.90 16 10 C 0.04 1.76 2.46 -10.86 -0.03 1.73 16 11 H 0.02 1.44 6.75 -2.38 -0.02 1.42 16 12 C -0.50 -27.16 6.29 25.60 0.16 -26.99 16 13 H 0.05 2.87 6.80 -2.91 -0.02 2.85 16 14 C 0.01 0.64 5.46 84.66 0.46 1.10 16 15 N -0.93 -55.29 12.65 21.45 0.27 -55.01 16 16 Si 0.94 44.27 29.54 68.60 2.03 46.30 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 18 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 H 0.04 1.53 8.13 -2.39 -0.02 1.51 16 21 H 0.04 1.68 7.48 -2.39 -0.02 1.66 16 22 H 0.04 1.81 6.34 -2.39 -0.02 1.79 16 23 H 0.03 1.68 7.73 -2.38 -0.02 1.67 16 24 H 0.05 1.99 7.62 -2.39 -0.02 1.97 16 25 H 0.04 1.59 8.13 -2.39 -0.02 1.57 16 26 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 30 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.07 2.46 7.54 -2.39 -0.02 2.44 16 32 H 0.05 2.15 7.69 -2.39 -0.02 2.13 16 33 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 Total: -1.00 -60.05 261.39 5.51 -54.54 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 1.05 Total: 9.67 kcal Atomic # 6 Polarization: -57.66 SS G_CDS: 2.16 Total: -55.50 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.27 Total: -55.01 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -60.05 5.51 -54.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075565754.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.190 kcal (2) G-P(sol) polarization free energy of solvation -60.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds