Wall clock time and date at job start Mon Mar 30 2020 02:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30697 * 1 3 3 Si 1.86799 * 119.99834 * 2 1 4 4 H 1.48501 * 109.47376 * 85.13800 * 3 2 1 5 5 H 1.48492 * 109.47071 * 205.14161 * 3 2 1 6 6 H 1.48504 * 109.47233 * 325.13954 * 3 2 1 7 7 C 1.40305 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99785 * 22.99167 * 7 2 1 9 9 C 1.40067 * 120.00252 * 202.98624 * 7 2 1 10 10 C 1.34007 * 118.00258 * 26.58566 * 9 7 2 11 11 C 1.49722 * 122.54805 * 180.96029 * 10 9 7 12 12 H 1.08999 * 108.67265 * 99.03502 * 11 10 9 13 13 C 1.52669 * 111.88896 * 218.55245 * 11 10 9 14 14 C 1.53229 * 108.79568 * 183.05950 * 13 11 10 15 15 C 1.52881 * 110.03132 * 300.74865 * 14 13 11 16 16 C 1.53229 * 109.90136 * 58.81521 * 15 14 13 17 17 C 1.52724 * 108.78915 * 300.39829 * 16 15 14 18 18 H 1.08997 * 109.41807 * 301.88252 * 17 16 15 19 19 C 1.52859 * 111.18232 * 180.90156 * 17 16 15 20 20 C 1.50019 * 118.00832 * 206.85409 * 9 7 2 21 21 H 0.97003 * 119.99944 * 0.02562 * 1 2 3 22 22 H 1.07997 * 118.73537 * 1.23591 * 10 9 7 23 23 H 1.09002 * 109.58200 * 302.84778 * 13 11 10 24 24 H 1.09002 * 109.58681 * 63.26309 * 13 11 10 25 25 H 1.09001 * 109.37809 * 60.91848 * 14 13 11 26 26 H 1.08996 * 109.37795 * 180.58191 * 14 13 11 27 27 H 1.08995 * 109.37182 * 178.89975 * 15 14 13 28 28 H 1.09000 * 109.37318 * 298.66035 * 15 14 13 29 29 H 1.08990 * 109.44123 * 180.69295 * 16 15 14 30 30 H 1.09004 * 109.73031 * 60.27341 * 16 15 14 31 31 H 1.08997 * 109.68753 * 51.99359 * 19 17 16 32 32 H 1.08999 * 109.72298 * 291.43357 * 19 17 16 33 33 H 1.09001 * 109.21080 * 285.17813 * 20 9 7 34 34 H 1.08994 * 109.21627 * 44.51500 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.3857 2.1058 1.3950 5 1 3.5860 1.4128 -0.5948 6 1 1.4935 2.6209 -0.8003 7 6 2.0085 -1.2151 0.0005 8 1 1.5328 -2.1134 -0.3644 9 6 3.3258 -1.2631 0.4742 10 6 3.7021 -0.3506 1.3807 11 6 5.0900 -0.2951 1.9395 12 1 5.6486 0.4768 1.4102 13 6 5.0913 0.0476 3.4272 14 6 6.5423 0.1611 3.9064 15 6 7.2767 -1.1587 3.6695 16 6 7.2452 -1.5130 2.1791 17 6 5.7896 -1.6402 1.7344 18 1 5.2927 -2.4024 2.3346 19 6 5.6946 -2.0157 0.2557 20 6 4.2312 -2.3289 -0.0686 21 1 -0.4850 0.8401 -0.0004 22 1 2.9749 0.3699 1.7248 23 1 4.5796 0.9973 3.5838 24 1 4.5832 -0.7397 3.9840 25 1 7.0436 0.9576 3.3565 26 1 6.5544 0.3956 4.9707 27 1 8.3120 -1.0600 3.9958 28 1 6.7915 -1.9501 4.2407 29 1 7.7598 -2.4605 2.0205 30 1 7.7356 -0.7277 1.6037 31 1 6.3103 -2.8934 0.0595 32 1 6.0366 -1.1825 -0.3581 33 1 3.9628 -3.2877 0.3751 34 1 4.1081 -2.3877 -1.1499 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075565795.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:01 Heat of formation + Delta-G solvation = -30.411972 kcal Electronic energy + Delta-G solvation = -13960.622999 eV Core-core repulsion = 11856.466091 eV Total energy + Delta-G solvation = -2104.156909 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 206.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.99091 -35.36609 -33.06604 -31.36304 -29.82639 -28.28905 -24.57725 -22.81504 -21.07631 -20.93848 -19.30862 -18.05195 -15.84648 -15.24287 -14.46717 -14.07135 -13.68894 -13.16019 -12.98205 -12.89608 -12.69237 -11.84423 -11.63020 -11.47872 -11.08340 -10.98349 -10.78000 -10.45060 -10.33125 -10.24488 -10.17093 -9.81731 -9.66791 -9.09492 -8.94796 -8.60950 -7.30310 -6.65354 -4.21263 3.26566 3.36817 3.48140 3.80654 4.28099 5.11672 5.19669 5.23059 5.25348 5.63551 5.74106 5.85120 5.94167 6.01505 6.03202 6.08008 6.19642 6.31042 6.41048 6.44724 6.49693 6.60620 6.73222 6.77434 6.82031 6.87709 6.94408 7.00404 7.27811 7.32393 7.48664 8.01067 8.29011 8.81153 8.94952 9.27789 10.37476 Molecular weight = 206.14amu Principal moments of inertia in cm(-1) A = 0.040224 B = 0.011710 C = 0.010053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.941893 B = 2390.546833 C = 2784.505032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.087 3.913 3 Si 0.927 3.073 4 H -0.278 1.278 5 H -0.252 1.252 6 H -0.308 1.308 7 C -0.469 4.469 8 H 0.076 0.924 9 C 0.051 3.949 10 C -0.392 4.392 11 C -0.006 4.006 12 H 0.034 0.966 13 C -0.109 4.109 14 C -0.119 4.119 15 C -0.115 4.115 16 C -0.113 4.113 17 C -0.079 4.079 18 H 0.065 0.935 19 C -0.107 4.107 20 C -0.077 4.077 21 H 0.278 0.722 22 H 0.084 0.916 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.404 -0.578 3.945 12.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.129 4.129 3 Si 0.756 3.244 4 H -0.205 1.205 5 H -0.175 1.175 6 H -0.237 1.237 7 C -0.499 4.499 8 H 0.094 0.906 9 C 0.049 3.951 10 C -0.413 4.413 11 C -0.024 4.024 12 H 0.052 0.948 13 C -0.146 4.146 14 C -0.156 4.156 15 C -0.153 4.153 16 C -0.151 4.151 17 C -0.097 4.097 18 H 0.083 0.917 19 C -0.144 4.144 20 C -0.114 4.114 21 H 0.088 0.912 22 H 0.102 0.898 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.147 -0.518 3.916 11.826 hybrid contribution 0.091 0.855 0.015 0.860 sum 11.237 0.338 3.931 11.910 Atomic orbital electron populations 1.69718 1.08324 1.29598 1.37570 1.26208 0.94467 1.01677 0.90587 0.86030 0.80527 0.79814 0.78003 1.20537 1.17512 1.23744 1.19235 0.96368 0.96064 1.38230 0.90579 1.18078 0.92777 0.92188 0.92022 1.21446 0.96512 1.11001 1.12337 1.19252 0.95623 0.94379 0.93166 0.94833 1.21532 0.94581 1.00911 0.97619 1.21575 0.97019 0.97227 0.99804 1.21505 0.99153 0.97776 0.96828 1.21594 0.97490 1.00405 0.95575 1.21040 0.93971 0.98707 0.96008 0.91695 1.21486 0.97013 0.99744 0.96160 1.20375 0.93025 0.98240 0.99772 0.91180 0.89806 0.92930 0.92323 0.92676 0.93042 0.93028 0.92342 0.92836 0.92493 0.93402 0.92662 0.92723 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.76 13.92 55.57 0.77 -22.98 16 2 C 0.09 2.45 5.24 -17.26 -0.09 2.36 16 3 Si 0.93 23.10 24.59 -169.99 -4.18 18.92 16 4 H -0.28 -6.93 6.69 56.52 0.38 -6.55 16 5 H -0.25 -6.28 7.03 56.52 0.40 -5.88 16 6 H -0.31 -7.46 7.11 56.52 0.40 -7.05 16 7 C -0.47 -13.29 9.42 -38.12 -0.36 -13.65 16 8 H 0.08 2.25 8.06 -52.48 -0.42 1.83 16 9 C 0.05 1.31 5.14 -105.75 -0.54 0.76 16 10 C -0.39 -9.70 6.51 -36.27 -0.24 -9.93 16 11 C -0.01 -0.12 1.97 -92.41 -0.18 -0.31 16 12 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 13 C -0.11 -1.98 5.37 -26.78 -0.14 -2.12 16 14 C -0.12 -1.75 5.90 -26.67 -0.16 -1.91 16 15 C -0.12 -1.58 5.91 -26.67 -0.16 -1.73 16 16 C -0.11 -1.67 5.34 -26.75 -0.14 -1.82 16 17 C -0.08 -1.42 1.87 -90.83 -0.17 -1.59 16 18 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 19 C -0.11 -1.94 5.41 -26.74 -0.14 -2.09 16 20 C -0.08 -1.63 5.70 -28.15 -0.16 -1.79 16 21 H 0.28 7.33 8.29 -40.82 -0.34 6.99 16 22 H 0.08 2.25 4.30 -52.49 -0.23 2.02 16 23 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 1.02 8.11 -51.93 -0.42 0.60 16 33 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 257.65 15.07 3.88 3.88 Total: -1.00 -28.33 257.65 -7.73 -36.06 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -5.73 Total: -2.06 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: -2.49 Total: -33.83 kcal Atomic # 7 Polarization: -23.76 SS G_CDS: 0.77 Total: -22.98 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -4.18 Total: 18.92 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.33 -7.73 -36.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075565795.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.652 kcal (2) G-P(sol) polarization free energy of solvation -28.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds