Wall clock time and date at job start Mon Mar 30 2020 02:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30697 * 1 3 3 Si 1.86799 * 119.99834 * 2 1 4 4 H 1.48501 * 109.47376 * 85.13800 * 3 2 1 5 5 H 1.48492 * 109.47071 * 205.14161 * 3 2 1 6 6 H 1.48504 * 109.47233 * 325.13954 * 3 2 1 7 7 C 1.40305 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99785 * 22.99167 * 7 2 1 9 9 C 1.40067 * 120.00252 * 202.98624 * 7 2 1 10 10 C 1.34007 * 118.00258 * 26.58566 * 9 7 2 11 11 C 1.49722 * 122.54805 * 180.96029 * 10 9 7 12 12 H 1.08999 * 108.67265 * 99.03502 * 11 10 9 13 13 C 1.52669 * 111.88896 * 218.55245 * 11 10 9 14 14 C 1.53229 * 108.79568 * 183.05950 * 13 11 10 15 15 C 1.52881 * 110.03132 * 300.74865 * 14 13 11 16 16 C 1.53229 * 109.90136 * 58.81521 * 15 14 13 17 17 C 1.52724 * 108.78915 * 300.39829 * 16 15 14 18 18 H 1.08997 * 109.41807 * 301.88252 * 17 16 15 19 19 C 1.52859 * 111.18232 * 180.90156 * 17 16 15 20 20 C 1.50019 * 118.00832 * 206.85409 * 9 7 2 21 21 H 0.97003 * 119.99944 * 0.02562 * 1 2 3 22 22 H 1.07997 * 118.73537 * 1.23591 * 10 9 7 23 23 H 1.09002 * 109.58200 * 302.84778 * 13 11 10 24 24 H 1.09002 * 109.58681 * 63.26309 * 13 11 10 25 25 H 1.09001 * 109.37809 * 60.91848 * 14 13 11 26 26 H 1.08996 * 109.37795 * 180.58191 * 14 13 11 27 27 H 1.08995 * 109.37182 * 178.89975 * 15 14 13 28 28 H 1.09000 * 109.37318 * 298.66035 * 15 14 13 29 29 H 1.08990 * 109.44123 * 180.69295 * 16 15 14 30 30 H 1.09004 * 109.73031 * 60.27341 * 16 15 14 31 31 H 1.08997 * 109.68753 * 51.99359 * 19 17 16 32 32 H 1.08999 * 109.72298 * 291.43357 * 19 17 16 33 33 H 1.09001 * 109.21080 * 285.17813 * 20 9 7 34 34 H 1.08994 * 109.21627 * 44.51500 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.3857 2.1058 1.3950 5 1 3.5860 1.4128 -0.5948 6 1 1.4935 2.6209 -0.8003 7 6 2.0085 -1.2151 0.0005 8 1 1.5328 -2.1134 -0.3644 9 6 3.3258 -1.2631 0.4742 10 6 3.7021 -0.3506 1.3807 11 6 5.0900 -0.2951 1.9395 12 1 5.6486 0.4768 1.4102 13 6 5.0913 0.0476 3.4272 14 6 6.5423 0.1611 3.9064 15 6 7.2767 -1.1587 3.6695 16 6 7.2452 -1.5130 2.1791 17 6 5.7896 -1.6402 1.7344 18 1 5.2927 -2.4024 2.3346 19 6 5.6946 -2.0157 0.2557 20 6 4.2312 -2.3289 -0.0686 21 1 -0.4850 0.8401 -0.0004 22 1 2.9749 0.3699 1.7248 23 1 4.5796 0.9973 3.5838 24 1 4.5832 -0.7397 3.9840 25 1 7.0436 0.9576 3.3565 26 1 6.5544 0.3956 4.9707 27 1 8.3120 -1.0600 3.9958 28 1 6.7915 -1.9501 4.2407 29 1 7.7598 -2.4605 2.0205 30 1 7.7356 -0.7277 1.6037 31 1 6.3103 -2.8934 0.0595 32 1 6.0366 -1.1825 -0.3581 33 1 3.9628 -3.2877 0.3751 34 1 4.1081 -2.3877 -1.1499 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075565795.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:01 Heat of formation + Delta-G solvation = -45.718830 kcal Electronic energy + Delta-G solvation = -13961.286755 eV Core-core repulsion = 11856.466091 eV Total energy + Delta-G solvation = -2104.820664 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 206.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.49274 -37.04913 -34.94331 -32.96449 -31.42642 -29.80972 -26.45602 -24.31876 -22.61969 -22.44120 -20.65455 -19.94884 -17.73534 -17.20254 -15.93549 -15.40247 -15.14542 -14.97734 -14.60462 -14.47478 -14.28496 -13.50670 -13.38853 -13.06814 -12.57715 -12.48758 -12.36833 -12.16575 -11.93139 -11.83663 -11.57779 -11.46762 -11.20409 -11.04634 -10.50478 -10.35857 -9.30619 -8.80191 -6.39012 1.23264 1.30669 1.45004 1.77152 2.20902 3.10041 3.87911 3.91349 4.03751 4.28308 4.39032 4.45608 4.60625 4.71794 4.72356 4.77752 4.86029 4.92889 4.93714 5.09596 5.14265 5.21602 5.27608 5.32374 5.35152 5.39758 5.47405 5.49338 5.53564 5.61535 5.81310 5.95883 6.14853 6.69654 6.87238 7.20154 8.27808 Molecular weight = 206.14amu Principal moments of inertia in cm(-1) A = 0.040224 B = 0.011710 C = 0.010053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.941893 B = 2390.546833 C = 2784.505032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.046 3.954 3 Si 0.979 3.021 4 H -0.280 1.280 5 H -0.252 1.252 6 H -0.294 1.294 7 C -0.502 4.502 8 H 0.045 0.955 9 C 0.034 3.966 10 C -0.378 4.378 11 C -0.015 4.015 12 H 0.034 0.966 13 C -0.109 4.109 14 C -0.113 4.113 15 C -0.114 4.114 16 C -0.107 4.107 17 C -0.076 4.076 18 H 0.055 0.945 19 C -0.101 4.101 20 C -0.078 4.078 21 H 0.286 0.714 22 H 0.059 0.941 23 H 0.039 0.961 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.632 -0.394 4.822 15.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.166 4.166 3 Si 0.806 3.194 4 H -0.207 1.207 5 H -0.176 1.176 6 H -0.222 1.222 7 C -0.532 4.532 8 H 0.064 0.936 9 C 0.032 3.968 10 C -0.400 4.400 11 C -0.033 4.033 12 H 0.052 0.948 13 C -0.147 4.147 14 C -0.151 4.151 15 C -0.151 4.151 16 C -0.145 4.145 17 C -0.094 4.094 18 H 0.074 0.926 19 C -0.139 4.139 20 C -0.115 4.115 21 H 0.096 0.904 22 H 0.076 0.924 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.378 -0.337 4.791 15.159 hybrid contribution -0.946 0.761 -0.213 1.233 sum 13.432 0.424 4.578 14.197 Atomic orbital electron populations 1.69751 1.09352 1.30702 1.39562 1.26895 0.95102 1.04215 0.90389 0.85226 0.79434 0.76881 0.77880 1.20676 1.17559 1.22188 1.19427 0.98203 0.95472 1.40139 0.93637 1.18402 0.92420 0.93851 0.92118 1.21806 0.98326 1.09013 1.10821 1.19367 0.92994 0.96362 0.94561 0.94803 1.21508 0.97407 0.99907 0.95892 1.21540 0.94225 0.98377 1.00941 1.21521 1.00648 0.96860 0.96080 1.21559 0.94701 1.01928 0.96291 1.21018 0.96215 0.96422 0.95787 0.92650 1.21482 0.94891 1.01208 0.96288 1.20392 0.94585 0.96985 0.99573 0.90417 0.92364 0.94196 0.93078 0.92137 0.91144 0.90181 0.92262 0.90539 0.91971 0.89915 0.92863 0.92165 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.56 13.92 21.89 0.30 -51.25 16 2 C 0.05 2.68 5.24 85.36 0.45 3.12 16 3 Si 0.98 48.33 24.59 68.60 1.69 50.01 16 4 H -0.28 -13.75 6.69 99.48 0.67 -13.08 16 5 H -0.25 -12.29 7.03 99.48 0.70 -11.59 16 6 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 7 C -0.50 -29.59 9.42 23.22 0.22 -29.37 16 8 H 0.05 2.86 8.06 -2.91 -0.02 2.84 16 9 C 0.03 1.74 5.14 -20.60 -0.11 1.63 16 10 C -0.38 -18.71 6.51 24.42 0.16 -18.55 16 11 C -0.01 -0.58 1.97 -11.96 -0.02 -0.60 16 12 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 13 C -0.11 -3.78 5.37 30.56 0.16 -3.62 16 14 C -0.11 -2.92 5.90 30.63 0.18 -2.74 16 15 C -0.11 -2.57 5.91 30.63 0.18 -2.39 16 16 C -0.11 -2.67 5.34 30.58 0.16 -2.51 16 17 C -0.08 -2.52 1.87 -10.93 -0.02 -2.54 16 18 H 0.05 1.95 8.10 -2.39 -0.02 1.93 16 19 C -0.10 -3.40 5.41 30.59 0.17 -3.24 16 20 C -0.08 -3.26 5.70 29.68 0.17 -3.09 16 21 H 0.29 15.50 8.29 -92.71 -0.77 14.73 16 22 H 0.06 3.17 4.30 -2.91 -0.01 3.15 16 23 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.08 2.23 8.14 -2.39 -0.02 2.22 16 32 H 0.05 1.81 8.11 -2.39 -0.02 1.80 16 33 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -62.63 257.65 4.69 -57.94 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: 1.00 Total: 7.18 kcal Atomic # 6 Polarization: -65.58 SS G_CDS: 1.70 Total: -63.88 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: 0.30 Total: -51.25 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 1.69 Total: 50.01 kcal Total: -62.63 4.69 -57.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075565795.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.221 kcal (2) G-P(sol) polarization free energy of solvation -62.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds