Wall clock time and date at job start Mon Mar 30 2020 02:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.39675 * 119.99893 * 2 1 4 4 C 1.38911 * 120.07577 * 180.02562 * 3 2 1 5 5 C 1.38103 * 119.92539 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.07368 * 0.02562 * 5 4 3 7 7 C 1.50705 * 119.92258 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47297 * 339.99706 * 7 6 5 9 9 N 1.46896 * 109.46985 * 219.99495 * 7 6 5 10 10 C 1.50698 * 109.47361 * 99.99787 * 7 6 5 11 11 H 1.08001 * 119.99909 * 5.58446 * 10 7 6 12 12 C 1.37874 * 120.00296 * 185.59452 * 10 7 6 13 13 N 1.31520 * 119.99957 * 194.82055 * 12 10 7 14 14 Si 1.86797 * 119.99943 * 14.81407 * 12 10 7 15 15 H 1.48501 * 109.47271 * 180.02562 * 14 12 10 16 16 H 1.48498 * 109.47116 * 300.00439 * 14 12 10 17 17 H 1.48505 * 109.47005 * 60.00536 * 14 12 10 18 18 C 1.38278 * 120.15252 * 0.26633 * 6 5 4 19 19 C 1.38104 * 120.07407 * 359.45695 * 18 6 5 20 20 H 1.08996 * 109.47241 * 299.99938 * 1 2 3 21 21 H 1.09005 * 109.47083 * 59.99958 * 1 2 3 22 22 H 1.08995 * 109.46797 * 180.02562 * 1 2 3 23 23 H 0.96997 * 120.00068 * 180.02562 * 2 1 3 24 24 H 1.07994 * 120.03914 * 359.96056 * 4 3 2 25 25 H 1.08002 * 119.95990 * 180.02562 * 5 4 3 26 26 H 1.00902 * 111.00351 * 179.14804 * 9 7 6 27 27 H 1.00902 * 111.00162 * 303.10956 * 9 7 6 28 28 H 0.96997 * 120.00103 * 354.89538 * 13 12 10 29 29 H 1.07998 * 119.96680 * 179.71023 * 18 6 5 30 30 H 1.07999 * 120.04370 * 180.27347 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2096 0.0000 4 6 3.5525 1.2115 -0.0005 5 6 4.2398 2.4093 -0.0011 6 6 3.5468 3.6060 -0.0005 7 6 4.3003 4.9111 -0.0005 8 1 5.3184 4.7429 0.3506 9 7 3.6266 5.8655 0.8901 10 6 4.3373 5.4698 -1.3996 11 1 3.7874 4.9818 -2.1907 12 6 5.0734 6.6039 -1.6699 13 7 4.8838 7.2584 -2.7948 14 14 6.3398 7.2109 -0.4381 15 1 6.9901 8.4392 -0.9613 16 1 5.6693 7.5170 0.8510 17 1 7.3664 6.1593 -0.2248 18 6 2.1640 3.6078 0.0061 19 6 1.4704 2.4136 0.0009 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.9500 -0.8400 -0.0004 24 1 4.0943 0.2773 -0.0003 25 1 5.3198 2.4114 -0.0019 26 1 4.1207 6.7447 0.9182 27 1 2.6650 5.9996 0.6154 28 1 4.2808 6.9036 -3.4666 29 1 1.6258 4.5441 0.0112 30 1 0.3904 2.4156 0.0016 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104505904.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:16 Heat of formation + Delta-G solvation = 1.088956 kcal Electronic energy + Delta-G solvation = -12988.926394 eV Core-core repulsion = 10782.595125 eV Total energy + Delta-G solvation = -2206.331269 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.38879 -37.47103 -35.47963 -33.70886 -31.71741 -30.30522 -27.77679 -26.49434 -24.02592 -22.88114 -21.21462 -19.77675 -18.46792 -17.07486 -16.82676 -15.79149 -15.51469 -15.14515 -14.97982 -14.78411 -14.46283 -14.19448 -13.98149 -13.40196 -13.17488 -12.82139 -12.42710 -11.95287 -11.84530 -11.59218 -11.31999 -10.79919 -10.61576 -9.72787 -9.46606 -8.76711 -8.05215 -6.46479 0.63602 0.84972 1.43549 1.50811 1.71183 2.42202 2.68881 3.02414 3.10279 4.05989 4.13162 4.21085 4.42754 4.48957 4.68632 4.69468 4.71438 4.91686 4.96511 5.07884 5.29485 5.46010 5.64211 5.76409 5.93236 6.03955 6.10427 6.41589 6.53463 6.60284 6.84937 6.96586 7.35155 8.56638 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.059168 B = 0.007891 C = 0.007754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.117923 B = 3547.295741 C = 3610.183759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.753 5.753 3 C 0.191 3.809 4 C -0.194 4.194 5 C -0.094 4.094 6 C -0.111 4.111 7 C 0.220 3.780 8 H 0.038 0.962 9 N -0.845 5.845 10 C -0.620 4.620 11 H 0.011 0.989 12 C -0.022 4.022 13 N -0.934 5.934 14 Si 1.091 2.909 15 H -0.288 1.288 16 H -0.239 1.239 17 H -0.267 1.267 18 C -0.080 4.080 19 C -0.202 4.202 20 H 0.049 0.951 21 H 0.043 0.957 22 H 0.099 0.901 23 H 0.407 0.593 24 H 0.141 0.859 25 H 0.119 0.881 26 H 0.328 0.672 27 H 0.328 0.672 28 H 0.250 0.750 29 H 0.108 0.892 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.974 -13.077 7.974 16.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.385 5.385 3 C 0.089 3.911 4 C -0.216 4.216 5 C -0.113 4.113 6 C -0.113 4.113 7 C 0.110 3.890 8 H 0.056 0.944 9 N -0.376 5.376 10 C -0.660 4.660 11 H 0.029 0.971 12 C -0.220 4.220 13 N -0.570 5.570 14 Si 0.912 3.088 15 H -0.214 1.214 16 H -0.164 1.164 17 H -0.192 1.192 18 C -0.099 4.099 19 C -0.224 4.224 20 H 0.067 0.933 21 H 0.062 0.938 22 H 0.118 0.882 23 H 0.243 0.757 24 H 0.159 0.841 25 H 0.137 0.863 26 H 0.142 0.858 27 H 0.140 0.860 28 H 0.059 0.941 29 H 0.126 0.874 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.990 -12.377 8.856 16.016 hybrid contribution -1.110 -0.669 -2.000 2.383 sum -6.099 -13.047 6.856 15.951 Atomic orbital electron populations 1.21621 0.79248 1.03712 1.00667 1.44365 1.06260 1.04423 1.83413 1.17814 0.91210 0.87013 0.95093 1.20694 0.92401 0.98240 1.10305 1.20900 0.99760 0.91842 0.98783 1.19820 0.94315 0.94974 1.02234 1.18074 0.93125 0.88442 0.89324 0.94449 1.59802 1.06613 1.15405 1.55736 1.22869 1.32677 1.14022 0.96385 0.97093 1.27346 0.99412 0.93933 1.01332 1.70987 1.38387 1.37945 1.09639 0.83440 0.74700 0.76345 0.74330 1.21403 1.16410 1.19210 1.20697 0.93686 0.97527 0.97974 1.20714 0.99844 0.91006 1.10858 0.93251 0.93824 0.88213 0.75743 0.84133 0.86297 0.85787 0.86029 0.94083 0.87359 0.85036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.56 9.94 127.77 1.27 2.83 16 2 N -0.75 -16.74 5.89 -360.80 -2.13 -18.87 16 3 C 0.19 5.94 6.65 38.22 0.25 6.19 16 4 C -0.19 -6.31 9.90 22.40 0.22 -6.09 16 5 C -0.09 -3.68 9.66 22.25 0.21 -3.47 16 6 C -0.11 -4.95 4.90 -19.84 -0.10 -5.04 16 7 C 0.22 10.78 2.48 43.42 0.11 10.89 16 8 H 0.04 1.84 6.71 -2.39 -0.02 1.82 16 9 N -0.84 -37.70 9.09 -174.95 -1.59 -39.29 16 10 C -0.62 -35.89 9.04 25.60 0.23 -35.66 16 11 H 0.01 0.70 7.99 -2.91 -0.02 0.68 16 12 C -0.02 -1.26 5.41 84.65 0.46 -0.80 16 13 N -0.93 -58.82 13.70 21.45 0.29 -58.53 16 14 Si 1.09 49.72 26.42 68.60 1.81 51.54 16 15 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 16 H -0.24 -9.58 5.62 99.48 0.56 -9.02 16 17 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 18 C -0.08 -3.25 9.27 22.25 0.21 -3.05 16 19 C -0.20 -6.91 9.31 22.40 0.21 -6.70 16 20 H 0.05 0.85 7.95 -2.39 -0.02 0.83 16 21 H 0.04 0.80 7.95 -2.38 -0.02 0.78 16 22 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.41 7.09 8.84 -92.71 -0.82 6.27 16 24 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 25 H 0.12 4.42 8.03 -2.91 -0.02 4.40 16 26 H 0.33 14.47 5.48 -89.69 -0.49 13.98 16 27 H 0.33 14.23 7.21 -89.69 -0.65 13.58 16 28 H 0.25 16.15 8.73 -92.71 -0.81 15.34 16 29 H 0.11 4.40 6.59 -2.91 -0.02 4.38 16 30 H 0.13 3.82 6.73 -2.91 -0.02 3.80 16 Total: -1.00 -68.36 249.90 0.49 -67.87 By element: Atomic # 1 Polarization: 39.15 SS G_CDS: -0.98 Total: 38.17 kcal Atomic # 6 Polarization: -43.97 SS G_CDS: 3.08 Total: -40.90 kcal Atomic # 7 Polarization: -113.26 SS G_CDS: -3.42 Total: -116.68 kcal Atomic # 14 Polarization: 49.72 SS G_CDS: 1.81 Total: 51.54 kcal Total: -68.36 0.49 -67.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104505904.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.963 kcal (2) G-P(sol) polarization free energy of solvation -68.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds