Wall clock time and date at job start Mon Mar 30 2020 02:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47298 * 2 1 4 4 C 1.38678 * 120.41581 * 265.30703 * 3 2 1 5 5 C 1.38625 * 118.42135 * 180.26460 * 4 3 2 6 6 C 1.38223 * 119.15978 * 359.42757 * 5 4 3 7 7 N 1.31856 * 120.76567 * 0.30777 * 6 5 4 8 8 C 1.31884 * 121.72562 * 359.97275 * 7 6 5 9 9 C 1.50697 * 119.62216 * 180.02562 * 8 7 6 10 10 H 1.08994 * 109.47348 * 194.99984 * 9 8 7 11 11 N 1.46903 * 109.47048 * 315.00046 * 9 8 7 12 12 C 1.50704 * 109.47316 * 74.99774 * 9 8 7 13 13 H 1.08001 * 119.99590 * 0.02562 * 12 9 8 14 14 C 1.37873 * 120.00404 * 180.02562 * 12 9 8 15 15 N 1.31523 * 119.99670 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 120.00424 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47202 * 59.99563 * 16 14 12 18 18 H 1.48496 * 109.47400 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46649 * 299.99551 * 16 14 12 20 20 H 1.08998 * 109.46975 * 60.00348 * 1 2 3 21 21 H 1.09000 * 109.47016 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46523 * 300.00498 * 1 2 3 23 23 H 1.08999 * 109.47244 * 239.99560 * 2 1 3 24 24 H 1.08998 * 109.46975 * 119.99652 * 2 1 3 25 25 H 1.08003 * 120.78575 * 359.97017 * 4 3 2 26 26 H 1.08002 * 120.42343 * 179.71252 * 5 4 3 27 27 H 1.08005 * 119.61951 * 180.28273 * 6 5 4 28 28 H 1.00895 * 111.00021 * 296.04694 * 11 9 8 29 29 H 1.00899 * 110.99890 * 59.99856 * 11 9 8 30 30 H 0.97003 * 119.99435 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3587 2.0501 -1.1919 5 6 2.8221 3.3557 -1.1434 6 6 2.9314 3.9865 0.0817 7 7 2.6067 3.3588 1.1948 8 6 2.1677 2.1152 1.1870 9 6 1.8095 1.4435 2.4876 10 1 1.7271 0.3681 2.3305 11 7 2.8556 1.7142 3.4829 12 6 0.4922 1.9810 2.9845 13 1 -0.0332 2.7335 2.4152 14 6 -0.0421 1.5123 4.1659 15 7 0.5975 0.5956 4.8589 16 14 -1.6753 2.1781 4.7815 17 1 -2.7326 1.9034 3.7756 18 1 -2.0282 1.5163 6.0631 19 1 -1.5636 3.6434 4.9948 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3632 0.5139 0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 2.2587 1.5336 -2.1352 26 1 3.0900 3.8751 -2.0516 27 1 3.2872 5.0052 0.1277 28 1 3.7352 1.3072 3.2027 29 1 2.9515 2.7053 3.6462 30 1 0.2217 0.2661 5.6903 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104668689.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:26 Heat of formation + Delta-G solvation = 26.008182 kcal Electronic energy + Delta-G solvation = -13456.601537 eV Core-core repulsion = 11251.350847 eV Total energy + Delta-G solvation = -2205.250691 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.75670 -34.77489 -33.87717 -31.73355 -30.44347 -28.78767 -26.05226 -23.75442 -23.45843 -20.91145 -20.12266 -16.59372 -16.16006 -15.63913 -14.75295 -14.24875 -13.93133 -13.48290 -13.24469 -12.97062 -12.51880 -12.29427 -12.05386 -11.54272 -11.22106 -10.83396 -10.79905 -10.60417 -10.28263 -9.88887 -9.28869 -8.99760 -8.73702 -8.36487 -8.06076 -6.97813 -5.83921 -3.96542 1.76128 1.89134 3.38131 3.42614 3.46141 4.40540 4.57713 5.02887 5.22277 5.40332 5.40536 5.49019 5.60097 5.81747 5.94587 5.96585 6.23707 6.36588 6.41010 6.54403 6.59651 6.65410 6.86874 7.03540 7.35983 7.46487 7.95086 8.20205 8.65145 8.83780 9.12590 9.20800 9.69689 11.20658 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.033712 B = 0.011542 C = 0.010569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.366582 B = 2425.362748 C = 2648.614768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.075 4.075 3 C -0.137 4.137 4 C -0.083 4.083 5 C -0.201 4.201 6 C 0.085 3.915 7 N -0.477 5.477 8 C 0.135 3.865 9 C 0.264 3.736 10 H 0.060 0.940 11 N -0.804 5.804 12 C -0.519 4.519 13 H 0.050 0.950 14 C 0.085 3.915 15 N -0.847 5.847 16 Si 0.883 3.117 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.278 1.278 20 H 0.042 0.958 21 H 0.050 0.950 22 H 0.084 0.916 23 H 0.056 0.944 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.121 0.879 27 H 0.142 0.858 28 H 0.293 0.707 29 H 0.329 0.671 30 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.786 0.811 -10.235 10.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 C -0.140 4.140 4 C -0.109 4.109 5 C -0.222 4.222 6 C -0.072 4.072 7 N -0.185 5.185 8 C -0.004 4.004 9 C 0.153 3.847 10 H 0.078 0.922 11 N -0.329 5.329 12 C -0.558 4.558 13 H 0.068 0.932 14 C -0.122 4.122 15 N -0.482 5.482 16 Si 0.711 3.289 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.204 1.204 20 H 0.061 0.939 21 H 0.069 0.931 22 H 0.103 0.897 23 H 0.075 0.925 24 H 0.100 0.900 25 H 0.139 0.861 26 H 0.139 0.861 27 H 0.160 0.840 28 H 0.102 0.898 29 H 0.141 0.859 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.409 0.700 -8.724 9.077 hybrid contribution -0.482 0.687 -1.464 1.687 sum 1.927 1.387 -10.188 10.461 Atomic orbital electron populations 1.21786 0.94419 1.01338 1.03138 1.20438 0.96797 0.91929 1.02089 1.20864 1.01175 0.98198 0.93775 1.21361 0.97136 0.94733 0.97693 1.21874 1.04933 0.96287 0.99074 1.22680 0.96683 0.99492 0.88368 1.67562 1.10997 1.09600 1.30360 1.23476 0.89260 0.89224 0.98489 1.18368 0.91510 0.94846 0.79930 0.92246 1.59247 1.07108 1.18011 1.48522 1.20619 1.03172 1.24336 1.07646 0.93222 1.24895 0.96372 0.94599 0.96331 1.70089 1.36825 1.27256 1.14038 0.86834 0.84610 0.79380 0.78072 1.20433 1.21335 1.20362 0.93929 0.93069 0.89725 0.92506 0.89965 0.86111 0.86137 0.84019 0.89800 0.85896 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.90 37.16 0.37 -2.21 16 2 C -0.07 -1.28 5.48 -27.88 -0.15 -1.43 16 3 C -0.14 -2.61 5.15 -104.48 -0.54 -3.15 16 4 C -0.08 -1.36 9.84 -39.28 -0.39 -1.74 16 5 C -0.20 -3.13 10.11 -39.44 -0.40 -3.53 16 6 C 0.09 1.50 11.18 -17.55 -0.20 1.30 16 7 N -0.48 -10.22 9.70 -9.47 -0.09 -10.31 16 8 C 0.14 2.98 5.65 -82.59 -0.47 2.51 16 9 C 0.26 6.55 2.54 -70.01 -0.18 6.37 16 10 H 0.06 1.54 5.58 -51.93 -0.29 1.25 16 11 N -0.80 -19.74 8.49 -6.65 -0.06 -19.80 16 12 C -0.52 -14.26 7.84 -34.44 -0.27 -14.53 16 13 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 14 C 0.08 2.36 5.39 -17.82 -0.10 2.26 16 15 N -0.85 -24.44 12.77 55.43 0.71 -23.73 16 16 Si 0.88 21.52 29.54 -169.99 -5.02 16.50 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 20 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 21 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 22 H 0.08 1.75 7.06 -51.93 -0.37 1.39 16 23 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 24 H 0.08 1.52 6.17 -51.93 -0.32 1.20 16 25 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 26 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 27 H 0.14 2.04 8.06 -52.48 -0.42 1.62 16 28 H 0.29 6.50 9.06 -39.29 -0.36 6.14 16 29 H 0.33 8.13 8.53 -39.29 -0.34 7.79 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 255.88 15.07 3.86 3.86 Total: -1.00 -29.85 255.88 -6.66 -36.51 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -3.74 Total: 11.11 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -2.32 Total: -14.14 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.56 Total: -53.84 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.85 -6.66 -36.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104668689.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.518 kcal (2) G-P(sol) polarization free energy of solvation -29.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds