Wall clock time and date at job start Mon Mar 30 2020 02:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47298 * 2 1 4 4 C 1.38678 * 120.41581 * 265.30703 * 3 2 1 5 5 C 1.38625 * 118.42135 * 180.26460 * 4 3 2 6 6 C 1.38223 * 119.15978 * 359.42757 * 5 4 3 7 7 N 1.31856 * 120.76567 * 0.30777 * 6 5 4 8 8 C 1.31884 * 121.72562 * 359.97275 * 7 6 5 9 9 C 1.50697 * 119.62216 * 180.02562 * 8 7 6 10 10 H 1.08994 * 109.47348 * 194.99984 * 9 8 7 11 11 N 1.46903 * 109.47048 * 315.00046 * 9 8 7 12 12 C 1.50704 * 109.47316 * 74.99774 * 9 8 7 13 13 H 1.08001 * 119.99590 * 0.02562 * 12 9 8 14 14 C 1.37873 * 120.00404 * 180.02562 * 12 9 8 15 15 N 1.31523 * 119.99670 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 120.00424 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47202 * 59.99563 * 16 14 12 18 18 H 1.48496 * 109.47400 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46649 * 299.99551 * 16 14 12 20 20 H 1.08998 * 109.46975 * 60.00348 * 1 2 3 21 21 H 1.09000 * 109.47016 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46523 * 300.00498 * 1 2 3 23 23 H 1.08999 * 109.47244 * 239.99560 * 2 1 3 24 24 H 1.08998 * 109.46975 * 119.99652 * 2 1 3 25 25 H 1.08003 * 120.78575 * 359.97017 * 4 3 2 26 26 H 1.08002 * 120.42343 * 179.71252 * 5 4 3 27 27 H 1.08005 * 119.61951 * 180.28273 * 6 5 4 28 28 H 1.00895 * 111.00021 * 296.04694 * 11 9 8 29 29 H 1.00899 * 110.99890 * 59.99856 * 11 9 8 30 30 H 0.97003 * 119.99435 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3587 2.0501 -1.1919 5 6 2.8221 3.3557 -1.1434 6 6 2.9314 3.9865 0.0817 7 7 2.6067 3.3588 1.1948 8 6 2.1677 2.1152 1.1870 9 6 1.8095 1.4435 2.4876 10 1 1.7271 0.3681 2.3305 11 7 2.8556 1.7142 3.4829 12 6 0.4922 1.9810 2.9845 13 1 -0.0332 2.7335 2.4152 14 6 -0.0421 1.5123 4.1659 15 7 0.5975 0.5956 4.8589 16 14 -1.6753 2.1781 4.7815 17 1 -2.7326 1.9034 3.7756 18 1 -2.0282 1.5163 6.0631 19 1 -1.5636 3.6434 4.9948 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3632 0.5139 0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 2.2587 1.5336 -2.1352 26 1 3.0900 3.8751 -2.0516 27 1 3.2872 5.0052 0.1277 28 1 3.7352 1.3072 3.2027 29 1 2.9515 2.7053 3.6462 30 1 0.2217 0.2661 5.6903 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104668689.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:26 Heat of formation + Delta-G solvation = 5.180064 kcal Electronic energy + Delta-G solvation = -13457.504712 eV Core-core repulsion = 11251.350847 eV Total energy + Delta-G solvation = -2206.153866 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.18766 -36.50898 -35.37535 -33.66111 -32.01249 -30.24217 -28.06625 -25.20081 -25.08902 -22.40546 -21.69316 -18.55773 -17.63261 -17.22392 -16.44950 -15.85895 -15.81948 -14.99984 -14.70469 -14.45677 -14.13647 -13.87514 -13.55687 -13.10956 -12.91193 -12.72959 -12.66665 -12.19208 -11.88248 -11.64034 -11.16296 -10.51906 -10.47681 -10.18696 -9.54305 -8.84777 -7.95963 -6.13998 0.37457 0.54730 1.41576 1.43387 1.50294 2.46988 3.04361 3.27778 3.68405 3.98556 4.05635 4.21695 4.25896 4.50992 4.53786 4.62985 4.66629 4.88221 5.07584 5.09385 5.22825 5.25701 5.43565 5.57383 5.63722 5.76125 5.98951 6.20384 6.65052 7.10607 7.24309 7.39603 7.54834 9.07559 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.033712 B = 0.011542 C = 0.010569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.366582 B = 2425.362748 C = 2648.614768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.072 4.072 3 C -0.149 4.149 4 C -0.079 4.079 5 C -0.182 4.182 6 C 0.069 3.931 7 N -0.512 5.512 8 C 0.101 3.899 9 C 0.268 3.732 10 H 0.040 0.960 11 N -0.814 5.814 12 C -0.524 4.524 13 H 0.031 0.969 14 C 0.039 3.961 15 N -0.877 5.877 16 Si 0.941 3.059 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.280 1.280 20 H 0.059 0.941 21 H 0.068 0.932 22 H 0.039 0.961 23 H 0.094 0.906 24 H 0.058 0.942 25 H 0.161 0.839 26 H 0.167 0.833 27 H 0.170 0.830 28 H 0.303 0.697 29 H 0.324 0.676 30 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.843 1.360 -12.747 13.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.152 4.152 4 C -0.105 4.105 5 C -0.202 4.202 6 C -0.088 4.088 7 N -0.222 5.222 8 C -0.038 4.038 9 C 0.158 3.842 10 H 0.057 0.943 11 N -0.339 5.339 12 C -0.563 4.563 13 H 0.049 0.951 14 C -0.165 4.165 15 N -0.513 5.513 16 Si 0.767 3.233 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.206 1.206 20 H 0.078 0.922 21 H 0.087 0.913 22 H 0.058 0.942 23 H 0.112 0.888 24 H 0.076 0.924 25 H 0.179 0.821 26 H 0.184 0.816 27 H 0.187 0.813 28 H 0.113 0.887 29 H 0.136 0.864 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.460 1.243 -11.245 11.578 hybrid contribution -0.437 0.576 -0.808 1.085 sum 2.023 1.819 -12.053 12.356 Atomic orbital electron populations 1.21703 0.94676 1.02039 1.01683 1.20439 0.96499 0.91376 1.02675 1.21040 1.01356 0.98877 0.93937 1.21815 0.95570 0.95123 0.98007 1.22360 1.02070 0.95895 0.99846 1.23250 0.96498 1.00702 0.88345 1.67404 1.12089 1.09765 1.32907 1.22894 0.92476 0.90232 0.98187 1.17997 0.90479 0.93928 0.81792 0.94253 1.59139 1.07728 1.17669 1.49406 1.20785 1.04466 1.23542 1.07521 0.95065 1.25552 0.99359 0.94939 0.96609 1.70199 1.38304 1.28448 1.14354 0.85925 0.81206 0.78421 0.77785 1.19682 1.20667 1.20624 0.92196 0.91334 0.94159 0.88781 0.92369 0.82130 0.81594 0.81266 0.88658 0.86402 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.84 9.90 71.98 0.71 -4.13 16 2 C -0.07 -2.39 5.48 29.85 0.16 -2.23 16 3 C -0.15 -5.47 5.15 -19.77 -0.10 -5.57 16 4 C -0.08 -2.27 9.84 22.47 0.22 -2.04 16 5 C -0.18 -4.85 10.11 22.36 0.23 -4.63 16 6 C 0.07 2.27 11.18 84.69 0.95 3.22 16 7 N -0.51 -21.86 9.70 -183.89 -1.78 -23.65 16 8 C 0.10 4.48 5.65 42.54 0.24 4.72 16 9 C 0.27 13.81 2.54 43.42 0.11 13.92 16 10 H 0.04 2.16 5.58 -2.39 -0.01 2.15 16 11 N -0.81 -41.44 8.49 -174.95 -1.48 -42.93 16 12 C -0.52 -29.82 7.84 25.60 0.20 -29.62 16 13 H 0.03 1.84 7.74 -2.91 -0.02 1.82 16 14 C 0.04 2.22 5.39 84.65 0.46 2.68 16 15 N -0.88 -51.98 12.77 21.45 0.27 -51.70 16 16 Si 0.94 45.10 29.54 68.60 2.03 47.12 16 17 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 19 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 20 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 21 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 22 H 0.04 1.70 7.06 -2.39 -0.02 1.69 16 23 H 0.09 2.38 8.07 -2.39 -0.02 2.36 16 24 H 0.06 2.19 6.17 -2.39 -0.01 2.18 16 25 H 0.16 3.29 8.06 -2.91 -0.02 3.26 16 26 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 27 H 0.17 4.38 8.06 -2.91 -0.02 4.35 16 28 H 0.30 13.98 9.06 -89.70 -0.81 13.17 16 29 H 0.32 16.66 8.53 -89.69 -0.77 15.89 16 30 H 0.26 14.51 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -66.42 255.88 1.78 -64.63 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: -0.42 Total: 30.21 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: 3.18 Total: -23.69 kcal Atomic # 7 Polarization: -115.29 SS G_CDS: -2.99 Total: -118.28 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -66.42 1.78 -64.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104668689.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.813 kcal (2) G-P(sol) polarization free energy of solvation -66.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds