Wall clock time and date at job start Mon Mar 30 2020 02:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00103 * 2 1 4 4 H 1.09003 * 109.47348 * 30.98621 * 3 2 1 5 5 C 1.53000 * 109.47234 * 150.98454 * 3 2 1 6 6 C 1.50689 * 109.47568 * 295.00321 * 5 3 2 7 7 H 1.08009 * 120.00029 * 0.02562 * 6 5 3 8 8 C 1.37877 * 120.00685 * 179.97438 * 6 5 3 9 9 N 1.31519 * 119.99666 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00650 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47057 * 59.99574 * 10 8 6 12 12 H 1.48495 * 109.47393 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.46934 * 300.00133 * 10 8 6 14 14 C 1.50705 * 109.47079 * 270.98609 * 3 2 1 15 15 C 1.38226 * 119.61853 * 1.58495 * 14 3 2 16 16 C 1.38628 * 119.15879 * 180.02562 * 15 14 3 17 17 C 1.38667 * 118.42174 * 359.97438 * 16 15 14 18 18 C 1.38176 * 119.16386 * 0.27332 * 17 16 15 19 19 N 1.31855 * 119.61776 * 181.60012 * 14 3 2 20 20 H 1.09000 * 109.46812 * 304.58394 * 1 2 3 21 21 H 1.09002 * 109.47229 * 64.58409 * 1 2 3 22 22 H 1.09002 * 109.47020 * 184.58224 * 1 2 3 23 23 H 1.00901 * 110.99835 * 123.95701 * 2 1 3 24 24 H 1.09006 * 109.46568 * 55.00291 * 5 3 2 25 25 H 1.09003 * 109.47260 * 174.99764 * 5 3 2 26 26 H 0.96996 * 120.00229 * 180.02562 * 9 8 6 27 27 H 1.08000 * 120.41781 * 359.97438 * 15 14 3 28 28 H 1.08004 * 120.78090 * 180.02562 * 16 15 14 29 29 H 1.08002 * 120.41424 * 180.02562 * 17 16 15 30 30 H 1.08000 * 119.61575 * 179.69804 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3032 2.0264 0.5291 5 6 3.3559 1.3955 0.6997 6 6 3.1801 1.0359 2.1524 7 1 2.1964 0.8121 2.5382 8 6 4.2751 0.9916 2.9892 9 7 5.4731 1.2626 2.5192 10 14 4.0571 0.5466 4.7902 11 1 3.4690 -0.8129 4.8965 12 1 5.3775 0.5698 5.4692 13 1 3.1511 1.5297 5.4368 14 6 2.1527 1.8491 -1.4207 15 6 1.7806 1.0228 -2.4644 16 6 1.9298 1.4717 -3.7675 17 6 2.4495 2.7408 -3.9729 18 6 2.8042 3.5082 -2.8800 19 7 2.6438 3.0504 -1.6536 20 1 -0.3633 0.5833 0.8461 21 1 -0.3634 0.4411 -0.9282 22 1 -0.3633 -1.0244 0.0821 23 1 1.8306 -0.5262 0.7814 24 1 4.0214 0.6744 0.2249 25 1 3.7869 2.3936 0.6219 26 1 6.2436 1.2310 3.1076 27 1 1.3795 0.0396 -2.2672 28 1 1.6472 0.8480 -4.6027 29 1 2.5791 3.1229 -4.9747 30 1 3.2142 4.4957 -3.0317 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164515153.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:56 Heat of formation + Delta-G solvation = 9.767444 kcal Electronic energy + Delta-G solvation = -13086.805013 eV Core-core repulsion = 10880.850071 eV Total energy + Delta-G solvation = -2205.954942 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.08738 -37.79559 -34.86147 -33.40717 -32.15057 -30.91920 -27.29629 -25.09118 -24.32032 -23.90998 -21.51350 -18.65965 -17.52998 -17.31878 -16.68041 -16.16588 -15.86078 -15.46851 -15.02760 -14.57522 -14.17412 -13.80638 -13.69876 -13.21453 -12.92467 -12.75062 -12.48017 -12.35008 -12.17129 -11.57524 -11.27388 -10.67675 -10.58500 -10.21947 -9.68886 -9.33512 -8.19896 -6.32813 0.33827 0.53051 1.40109 1.43366 1.51098 2.39924 2.99404 3.09169 3.24637 3.85338 4.05787 4.13405 4.37385 4.45892 4.48377 4.53663 4.73742 4.79257 4.91274 5.01967 5.07858 5.36213 5.38183 5.43296 5.49971 5.79819 5.95325 6.15869 6.22599 6.56765 6.81751 7.27968 7.36305 8.91754 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.042275 B = 0.008786 C = 0.007645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.177880 B = 3186.295903 C = 3661.608603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.685 5.685 3 C 0.149 3.851 4 H 0.037 0.963 5 C 0.046 3.954 6 C -0.539 4.539 7 H 0.063 0.937 8 C 0.004 3.996 9 N -0.930 5.930 10 Si 0.968 3.032 11 H -0.261 1.261 12 H -0.285 1.285 13 H -0.271 1.271 14 C 0.118 3.882 15 C -0.159 4.159 16 C -0.082 4.082 17 C -0.177 4.177 18 C 0.075 3.925 19 N -0.525 5.525 20 H 0.014 0.986 21 H 0.065 0.935 22 H 0.088 0.912 23 H 0.354 0.646 24 H -0.010 1.010 25 H -0.005 1.005 26 H 0.264 0.736 27 H 0.152 0.848 28 H 0.167 0.833 29 H 0.169 0.831 30 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.097 -0.983 -10.797 14.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.318 5.318 3 C 0.038 3.962 4 H 0.054 0.946 5 C 0.008 3.992 6 C -0.577 4.577 7 H 0.081 0.919 8 C -0.195 4.195 9 N -0.570 5.570 10 Si 0.792 3.208 11 H -0.185 1.185 12 H -0.210 1.210 13 H -0.196 1.196 14 C -0.020 4.020 15 C -0.178 4.178 16 C -0.108 4.108 17 C -0.196 4.196 18 C -0.082 4.082 19 N -0.235 5.235 20 H 0.033 0.967 21 H 0.084 0.916 22 H 0.106 0.894 23 H 0.174 0.826 24 H 0.008 0.992 25 H 0.014 0.986 26 H 0.072 0.928 27 H 0.170 0.830 28 H 0.185 0.815 29 H 0.187 0.813 30 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -8.647 -0.531 -10.714 13.778 hybrid contribution 0.028 -0.155 1.300 1.310 sum -8.619 -0.686 -9.414 12.782 Atomic orbital electron populations 1.22337 0.87102 1.02489 1.00249 1.60292 1.08264 1.12579 1.50667 1.20099 0.97199 0.89227 0.89699 0.94566 1.18938 0.91011 0.95163 0.94090 1.21468 0.93849 1.47392 0.95016 0.91929 1.25974 0.94770 0.94952 1.03791 1.70124 0.99519 1.49724 1.37630 0.85466 0.77316 0.79321 0.78700 1.18538 1.21042 1.19578 1.21434 0.93915 0.89842 0.96779 1.22204 1.01044 1.01818 0.92778 1.22052 0.95547 0.96101 0.97105 1.22456 1.00479 0.95405 1.01273 1.23203 0.96653 1.00972 0.87353 1.67319 1.13831 1.15984 1.26409 0.96743 0.91643 0.89354 0.82570 0.99205 0.98639 0.92772 0.83046 0.81506 0.81306 0.81191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 10.06 127.69 1.28 2.10 16 2 N -0.69 -26.08 5.31 -518.52 -2.75 -28.83 16 3 C 0.15 6.72 2.47 44.17 0.11 6.83 16 4 H 0.04 1.73 7.67 -2.39 -0.02 1.71 16 5 C 0.05 2.56 4.48 29.84 0.13 2.69 16 6 C -0.54 -30.72 8.10 25.60 0.21 -30.52 16 7 H 0.06 3.35 7.56 -2.91 -0.02 3.33 16 8 C 0.00 0.20 5.46 84.65 0.46 0.67 16 9 N -0.93 -57.85 13.29 21.45 0.28 -57.57 16 10 Si 0.97 44.39 29.54 68.60 2.03 46.41 16 11 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 14 C 0.12 4.86 6.12 42.55 0.26 5.12 16 15 C -0.16 -5.24 8.71 22.36 0.19 -5.04 16 16 C -0.08 -2.09 10.18 22.47 0.23 -1.86 16 17 C -0.18 -4.33 10.11 22.36 0.23 -4.10 16 18 C 0.08 2.38 11.18 84.67 0.95 3.33 16 19 N -0.53 -22.02 9.90 -183.89 -1.82 -23.84 16 20 H 0.01 0.44 7.94 -2.39 -0.02 0.42 16 21 H 0.06 1.79 7.29 -2.39 -0.02 1.77 16 22 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 23 H 0.35 14.50 7.31 -89.69 -0.66 13.85 16 24 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 25 H 0.00 -0.30 7.87 -2.39 -0.02 -0.32 16 26 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 27 H 0.15 4.69 6.33 -2.91 -0.02 4.67 16 28 H 0.17 2.82 8.06 -2.91 -0.02 2.79 16 29 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 30 H 0.17 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -69.77 256.95 2.26 -67.50 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.47 Total: 17.12 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 4.05 Total: -20.80 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -4.29 Total: -110.24 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -69.77 2.26 -67.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164515153.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.271 kcal (2) G-P(sol) polarization free energy of solvation -69.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds