Wall clock time and date at job start Mon Mar 30 2020 02:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47525 * 2 1 4 4 C 1.53155 * 109.47259 * 120.00226 * 2 1 3 5 5 C 1.53361 * 109.29570 * 189.51681 * 4 2 1 6 6 C 1.51208 * 108.22548 * 311.02985 * 5 4 2 7 7 N 1.30780 * 126.86171 * 196.17243 * 6 5 4 8 8 C 1.33129 * 110.02665 * 179.83425 * 7 6 5 9 9 C 1.39772 * 107.50922 * 0.02562 * 8 7 6 10 10 C 1.40066 * 127.12701 * 179.97438 * 9 8 7 11 11 H 1.08009 * 119.99750 * 187.45232 * 10 9 8 12 12 C 1.40063 * 120.00204 * 7.45290 * 10 9 8 13 13 N 1.30856 * 119.99757 * 10.50176 * 12 10 9 14 14 Si 1.86805 * 120.00101 * 190.49805 * 12 10 9 15 15 H 1.48498 * 109.46931 * 93.88419 * 14 12 10 16 16 H 1.48499 * 109.46863 * 213.88516 * 14 12 10 17 17 H 1.48500 * 109.47089 * 333.88546 * 14 12 10 18 18 N 1.35505 * 123.76008 * 16.02710 * 6 5 4 19 19 C 1.46437 * 124.99270 * 0.17097 * 18 6 5 20 20 H 1.08996 * 109.47275 * 299.99913 * 1 2 3 21 21 H 1.09005 * 109.47032 * 59.99418 * 1 2 3 22 22 H 1.09002 * 109.46987 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.50575 * 309.47505 * 4 2 1 24 24 H 1.09002 * 109.50141 * 69.56035 * 4 2 1 25 25 H 1.09002 * 109.71086 * 70.67678 * 5 4 2 26 26 H 1.09003 * 109.70397 * 191.29885 * 5 4 2 27 27 H 1.08004 * 126.24891 * 179.97438 * 8 7 6 28 28 H 0.97008 * 119.99856 * 179.97438 * 13 12 10 29 29 H 1.08999 * 109.58473 * 257.19868 * 19 18 6 30 30 H 1.09002 * 109.58198 * 136.79441 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0405 -0.7220 1.2505 5 6 3.5554 -0.5157 1.3718 6 6 4.1844 -0.8323 0.0337 7 7 5.4496 -1.0632 -0.2034 8 6 5.6333 -1.3089 -1.4989 9 6 4.3858 -1.2251 -2.1237 10 6 4.1073 -1.4112 -3.4838 11 1 3.1192 -1.2015 -3.8662 12 6 5.1101 -1.8691 -4.3478 13 7 6.2388 -2.3175 -3.8607 14 14 4.8362 -1.8398 -6.1954 15 1 5.3872 -0.5806 -6.7576 16 1 5.5227 -3.0012 -6.8160 17 1 3.3809 -1.9144 -6.4813 18 7 3.4865 -0.9209 -1.1244 19 6 2.0411 -0.7227 -1.2511 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.5461 -0.3157 2.1327 24 1 1.8235 -1.7872 1.1697 25 1 3.7650 0.5197 1.6403 26 1 3.9571 -1.1825 2.1348 27 1 6.5745 -1.5315 -1.9795 28 1 6.9332 -2.6350 -4.4590 29 1 1.5463 -1.6896 -1.3422 30 1 1.8312 -0.1182 -2.1335 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214112500.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:54 Heat of formation + Delta-G solvation = 28.856025 kcal Electronic energy + Delta-G solvation = -13463.072748 eV Core-core repulsion = 11257.945549 eV Total energy + Delta-G solvation = -2205.127199 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.25358 -36.39608 -33.58305 -31.90858 -30.50489 -28.09646 -25.46252 -24.88635 -22.40350 -20.49559 -19.74097 -17.87926 -17.02525 -15.37538 -14.80888 -14.42201 -13.84805 -13.69645 -13.26267 -12.85307 -12.56294 -12.24742 -11.90874 -11.54446 -11.32267 -10.98728 -10.82397 -10.67722 -10.49474 -10.44999 -10.29001 -9.95806 -9.25823 -8.13924 -7.98839 -6.77726 -6.61650 -4.15469 2.98406 3.10920 3.14059 3.73197 3.95122 4.34481 4.74092 4.97154 4.98191 5.21686 5.45207 5.52881 5.68633 5.76148 5.90083 5.92593 6.02162 6.11478 6.26019 6.30910 6.41598 6.48937 6.67055 7.07112 7.19107 7.69748 7.88405 8.06799 8.55407 8.94520 9.04911 9.18382 10.05672 10.37636 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.042380 B = 0.010447 C = 0.008543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.533876 B = 2679.639806 C = 3276.670890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 H 0.075 0.925 4 C -0.113 4.113 5 C -0.009 4.009 6 C 0.071 3.929 7 N -0.480 5.480 8 C -0.132 4.132 9 C 0.183 3.817 10 C -0.449 4.449 11 H 0.069 0.931 12 C 0.075 3.925 13 N -0.799 5.799 14 Si 0.921 3.079 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.266 1.266 18 N -0.491 5.491 19 C 0.131 3.869 20 H 0.057 0.943 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.175 0.825 28 H 0.278 0.722 29 H 0.060 0.940 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.059 2.791 3.237 10.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 H 0.093 0.907 4 C -0.151 4.151 5 C -0.048 4.048 6 C -0.181 4.181 7 N -0.199 5.199 8 C -0.281 4.281 9 C 0.071 3.929 10 C -0.485 4.485 11 H 0.087 0.913 12 C -0.142 4.142 13 N -0.427 5.427 14 Si 0.746 3.254 15 H -0.196 1.196 16 H -0.203 1.203 17 H -0.190 1.190 18 N -0.184 5.184 19 C 0.007 3.993 20 H 0.076 0.924 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.192 0.808 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.331 2.713 3.805 9.553 hybrid contribution -0.751 -0.060 -1.641 1.806 sum -9.082 2.654 2.164 9.706 Atomic orbital electron populations 1.21757 0.94561 1.01924 1.01693 1.21415 0.95552 1.00213 0.95080 0.90701 1.21649 0.96005 1.00594 0.96839 1.19706 0.92660 1.00625 0.91854 1.22111 0.88553 1.19262 0.88219 1.69237 1.14860 1.16367 1.19465 1.23043 0.97796 1.19505 0.87752 1.18867 0.88005 0.97447 0.88552 1.18309 0.98115 1.41837 0.90200 0.91267 1.25641 0.94443 0.93003 1.01094 1.69733 1.05426 1.30703 1.36821 0.86110 0.79260 0.78475 0.81596 1.19569 1.20262 1.18989 1.44886 1.05717 1.59484 1.08348 1.21405 0.80662 0.99627 0.97598 0.92416 0.92574 0.92532 0.91668 0.91892 0.92084 0.91113 0.80805 0.91116 0.92163 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.17 37.16 0.34 -1.30 16 2 C -0.10 -1.59 2.74 -90.41 -0.25 -1.84 16 3 H 0.07 1.18 8.12 -51.93 -0.42 0.76 16 4 C -0.11 -1.72 5.25 -26.46 -0.14 -1.86 16 5 C -0.01 -0.17 6.34 -27.45 -0.17 -0.35 16 6 C 0.07 1.77 7.64 -154.51 -1.18 0.59 16 7 N -0.48 -13.61 11.17 -9.49 -0.11 -13.72 16 8 C -0.13 -3.94 10.85 -16.42 -0.18 -4.11 16 9 C 0.18 5.21 6.72 -83.90 -0.56 4.64 16 10 C -0.45 -12.30 9.14 -38.21 -0.35 -12.65 16 11 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 12 C 0.08 1.95 5.45 -17.28 -0.09 1.86 16 13 N -0.80 -21.61 10.60 55.56 0.59 -21.02 16 14 Si 0.92 19.27 29.58 -169.99 -5.03 14.24 16 15 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 16 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 17 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 18 N -0.49 -12.21 3.18 -110.75 -0.35 -12.56 16 19 C 0.13 2.53 6.02 -3.94 -0.02 2.51 16 20 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.80 8.12 -51.93 -0.42 0.37 16 24 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.18 5.33 6.07 -52.48 -0.32 5.01 16 28 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 29 H 0.06 1.13 8.12 -51.93 -0.42 0.70 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 248.69 15.07 3.75 3.75 Total: -1.00 -31.27 248.69 -7.84 -39.12 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -4.09 Total: 2.69 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -2.61 Total: -12.50 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: 0.13 Total: -47.29 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -31.27 -7.84 -39.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214112500.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.975 kcal (2) G-P(sol) polarization free energy of solvation -31.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds