Wall clock time and date at job start Mon Mar 30 2020 02:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.70837 * 2 1 4 4 C 1.53356 * 109.71478 * 239.40541 * 2 1 3 5 5 C 1.53150 * 109.26403 * 191.27209 * 4 2 1 6 6 C 1.53258 * 109.45743 * 69.53270 * 5 4 2 7 7 N 1.46444 * 108.80223 * 309.75700 * 6 5 4 8 8 C 1.37843 * 127.66716 * 197.03384 * 7 6 5 9 9 C 1.40070 * 127.12288 * 359.95606 * 8 7 6 10 10 H 1.07999 * 120.00277 * 359.97438 * 9 8 7 11 11 C 1.40068 * 119.99974 * 180.02562 * 9 8 7 12 12 N 1.30856 * 120.00026 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99991 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46808 * 90.00292 * 13 11 9 15 15 H 1.48502 * 109.47089 * 209.99511 * 13 11 9 16 16 H 1.48490 * 109.47513 * 330.00317 * 13 11 9 17 17 C 1.39770 * 105.75072 * 179.87457 * 8 7 6 18 18 N 1.33140 * 107.50685 * 0.09989 * 17 8 7 19 19 C 1.30778 * 110.02298 * 359.95275 * 18 17 8 20 20 H 1.09002 * 109.47153 * 180.59487 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.59678 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.59659 * 1 2 3 23 23 H 1.09005 * 109.50750 * 311.20477 * 4 2 1 24 24 H 1.09000 * 109.50988 * 71.33324 * 4 2 1 25 25 H 1.09004 * 109.47622 * 189.52687 * 5 4 2 26 26 H 1.09001 * 109.47159 * 309.53590 * 5 4 2 27 27 H 1.09001 * 109.58527 * 69.54698 * 6 5 4 28 28 H 1.09005 * 109.58478 * 189.82107 * 6 5 4 29 29 H 0.96996 * 120.00545 * 179.97438 * 12 11 9 30 30 H 1.08000 * 126.24679 * 180.02562 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0473 -0.7348 -1.2427 5 6 3.5525 -0.9767 -1.0966 6 6 3.7981 -2.0171 0.0016 7 7 3.0546 -1.6228 1.2001 8 6 3.2366 -2.0727 2.4902 9 6 4.1779 -3.0105 2.9337 10 1 4.8613 -3.4634 2.2308 11 6 4.2320 -3.3615 4.2885 12 7 3.4029 -2.8139 5.1400 13 14 5.4868 -4.6126 4.8798 14 1 6.7384 -3.9134 5.2668 15 1 4.9437 -5.3415 6.0541 16 1 5.7760 -5.5774 3.7886 17 6 2.2886 -1.3980 3.2646 18 7 1.5985 -0.6028 2.4498 19 6 2.0399 -0.7251 1.2248 20 1 -0.3633 -1.0276 0.0107 21 1 -0.3633 0.5045 -0.8953 22 1 -0.3634 0.5231 0.8846 23 1 1.5329 -1.6908 -1.3408 24 1 1.8605 -0.1278 -2.1286 25 1 3.9550 -1.3432 -2.0409 26 1 4.0464 -0.0425 -0.8292 27 1 3.4535 -2.9941 -0.3371 28 1 4.8632 -2.0639 0.2289 29 1 3.4401 -3.0572 6.0782 30 1 2.1419 -1.5034 4.3294 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214112869.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:18 Heat of formation + Delta-G solvation = 30.283735 kcal Electronic energy + Delta-G solvation = -13534.004163 eV Core-core repulsion = 11328.938875 eV Total energy + Delta-G solvation = -2205.065289 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.25306 -35.91711 -33.56128 -32.91708 -29.44199 -28.12771 -25.88094 -24.64866 -21.70719 -20.99004 -19.75088 -17.78342 -16.97415 -15.35154 -14.81784 -14.34136 -14.01419 -13.52683 -13.17988 -12.88409 -12.52811 -11.91150 -11.65814 -11.46725 -11.25209 -10.89841 -10.77383 -10.68535 -10.57894 -10.42525 -10.09845 -9.87668 -9.32200 -8.08905 -7.97589 -6.75883 -6.56809 -4.16404 2.98737 3.10572 3.14052 3.74406 3.95172 4.36826 4.77528 5.10840 5.12741 5.25589 5.48961 5.53181 5.80939 5.93089 6.00039 6.07863 6.12563 6.15041 6.23117 6.44971 6.47541 6.70042 6.86009 7.09268 7.20670 7.71677 7.93665 8.08624 8.56860 8.95908 9.12403 9.19744 10.09028 10.39106 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.050693 B = 0.010172 C = 0.008697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.208450 B = 2752.081917 C = 3218.642272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.016 3.984 3 H 0.067 0.933 4 C -0.115 4.115 5 C -0.129 4.129 6 C 0.124 3.876 7 N -0.491 5.491 8 C 0.177 3.823 9 C -0.444 4.444 10 H 0.068 0.932 11 C 0.072 3.928 12 N -0.803 5.803 13 Si 0.923 3.077 14 H -0.271 1.271 15 H -0.277 1.277 16 H -0.266 1.266 17 C -0.135 4.135 18 N -0.478 5.478 19 C 0.078 3.922 20 H 0.049 0.951 21 H 0.045 0.955 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.277 0.723 30 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.822 0.767 -8.783 8.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.004 4.004 3 H 0.085 0.915 4 C -0.153 4.153 5 C -0.167 4.167 6 C 0.000 4.000 7 N -0.185 5.185 8 C 0.066 3.934 9 C -0.480 4.480 10 H 0.086 0.914 11 C -0.144 4.144 12 N -0.431 5.431 13 Si 0.748 3.252 14 H -0.197 1.197 15 H -0.202 1.202 16 H -0.190 1.190 17 C -0.283 4.283 18 N -0.197 5.197 19 C -0.175 4.175 20 H 0.069 0.931 21 H 0.064 0.936 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 0.153 1.274 -8.411 8.508 hybrid contribution 1.397 -1.245 0.083 1.873 sum 1.550 0.029 -8.328 8.471 Atomic orbital electron populations 1.21642 0.94574 1.01619 1.00904 1.19306 0.95227 0.96921 0.88968 0.91500 1.21677 0.95262 1.00809 0.97585 1.21816 0.97266 0.99602 0.97983 1.21349 0.96588 0.97240 0.84816 1.44883 1.30025 1.36810 1.06777 1.18900 0.97557 0.96389 0.80592 1.18323 1.15279 1.20860 0.93515 0.91367 1.25638 0.96144 0.96512 0.96147 1.69623 1.32325 1.37108 1.04017 0.86072 0.80261 0.80136 0.78688 1.19669 1.20199 1.19026 1.23413 1.01116 1.04132 0.99672 1.69250 1.27473 1.23120 0.99811 1.22044 0.97413 1.03277 0.94748 0.93135 0.93643 0.91767 0.91844 0.91741 0.90958 0.91438 0.92300 0.91094 0.91149 0.79966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 9.09 37.16 0.34 -1.85 16 2 C 0.02 0.30 3.12 -91.34 -0.28 0.02 16 3 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 4 C -0.12 -1.77 5.28 -26.47 -0.14 -1.91 16 5 C -0.13 -1.96 5.95 -26.52 -0.16 -2.12 16 6 C 0.12 2.39 6.71 -3.94 -0.03 2.36 16 7 N -0.49 -12.16 3.18 -110.75 -0.35 -12.52 16 8 C 0.18 5.03 6.75 -83.90 -0.57 4.46 16 9 C -0.44 -12.15 9.16 -38.21 -0.35 -12.50 16 10 H 0.07 1.76 7.79 -52.49 -0.41 1.35 16 11 C 0.07 1.86 5.50 -17.28 -0.10 1.77 16 12 N -0.80 -21.63 10.35 55.56 0.58 -21.06 16 13 Si 0.92 19.30 29.56 -169.99 -5.03 14.28 16 14 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 15 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 16 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 17 C -0.13 -3.98 10.89 -16.41 -0.18 -4.16 16 18 N -0.48 -13.33 11.03 -9.49 -0.10 -13.43 16 19 C 0.08 1.91 7.00 -154.52 -1.08 0.83 16 20 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 23 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 29 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 30 H 0.18 5.57 5.79 -52.49 -0.30 5.27 16 LS Contribution 248.10 15.07 3.74 3.74 Total: -1.00 -30.98 248.10 -7.78 -38.76 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -4.07 Total: 3.34 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -2.54 Total: -13.11 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.12 Total: -47.00 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.98 -7.78 -38.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214112869.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.041 kcal (2) G-P(sol) polarization free energy of solvation -30.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds