Wall clock time and date at job start Mon Mar 30 2020 02:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.70837 * 2 1 4 4 C 1.53356 * 109.71478 * 239.40541 * 2 1 3 5 5 C 1.53150 * 109.26403 * 191.27209 * 4 2 1 6 6 C 1.53258 * 109.45743 * 69.53270 * 5 4 2 7 7 N 1.46444 * 108.80223 * 309.75700 * 6 5 4 8 8 C 1.37843 * 127.66716 * 197.03384 * 7 6 5 9 9 C 1.40070 * 127.12288 * 359.95606 * 8 7 6 10 10 H 1.07999 * 120.00277 * 359.97438 * 9 8 7 11 11 C 1.40068 * 119.99974 * 180.02562 * 9 8 7 12 12 N 1.30856 * 120.00026 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99991 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46808 * 90.00292 * 13 11 9 15 15 H 1.48502 * 109.47089 * 209.99511 * 13 11 9 16 16 H 1.48490 * 109.47513 * 330.00317 * 13 11 9 17 17 C 1.39770 * 105.75072 * 179.87457 * 8 7 6 18 18 N 1.33140 * 107.50685 * 0.09989 * 17 8 7 19 19 C 1.30778 * 110.02298 * 359.95275 * 18 17 8 20 20 H 1.09002 * 109.47153 * 180.59487 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.59678 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.59659 * 1 2 3 23 23 H 1.09005 * 109.50750 * 311.20477 * 4 2 1 24 24 H 1.09000 * 109.50988 * 71.33324 * 4 2 1 25 25 H 1.09004 * 109.47622 * 189.52687 * 5 4 2 26 26 H 1.09001 * 109.47159 * 309.53590 * 5 4 2 27 27 H 1.09001 * 109.58527 * 69.54698 * 6 5 4 28 28 H 1.09005 * 109.58478 * 189.82107 * 6 5 4 29 29 H 0.96996 * 120.00545 * 179.97438 * 12 11 9 30 30 H 1.08000 * 126.24679 * 180.02562 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0473 -0.7348 -1.2427 5 6 3.5525 -0.9767 -1.0966 6 6 3.7981 -2.0171 0.0016 7 7 3.0546 -1.6228 1.2001 8 6 3.2366 -2.0727 2.4902 9 6 4.1779 -3.0105 2.9337 10 1 4.8613 -3.4634 2.2308 11 6 4.2320 -3.3615 4.2885 12 7 3.4029 -2.8139 5.1400 13 14 5.4868 -4.6126 4.8798 14 1 6.7384 -3.9134 5.2668 15 1 4.9437 -5.3415 6.0541 16 1 5.7760 -5.5774 3.7886 17 6 2.2886 -1.3980 3.2646 18 7 1.5985 -0.6028 2.4498 19 6 2.0399 -0.7251 1.2248 20 1 -0.3633 -1.0276 0.0107 21 1 -0.3633 0.5045 -0.8953 22 1 -0.3634 0.5231 0.8846 23 1 1.5329 -1.6908 -1.3408 24 1 1.8605 -0.1278 -2.1286 25 1 3.9550 -1.3432 -2.0409 26 1 4.0464 -0.0425 -0.8292 27 1 3.4535 -2.9941 -0.3371 28 1 4.8632 -2.0639 0.2289 29 1 3.4401 -3.0572 6.0782 30 1 2.1419 -1.5034 4.3294 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214112869.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:18 Heat of formation + Delta-G solvation = 11.125992 kcal Electronic energy + Delta-G solvation = -13534.834906 eV Core-core repulsion = 11328.938875 eV Total energy + Delta-G solvation = -2205.896031 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.15289 -37.44341 -35.50571 -34.60195 -31.09202 -30.08687 -27.34909 -26.60115 -23.21414 -22.56897 -21.79036 -19.43003 -18.91061 -17.28440 -16.44934 -16.02961 -15.46533 -15.07654 -14.78714 -14.52501 -14.20078 -13.51546 -13.35798 -13.10410 -12.93625 -12.63335 -12.46483 -12.19055 -12.05827 -11.88404 -11.50003 -11.45086 -11.22058 -10.16248 -9.94433 -8.82596 -8.52037 -6.25820 1.29099 1.38478 1.54122 1.86505 2.19117 2.61306 2.75861 3.37492 3.77508 3.85942 3.94985 4.01201 4.40935 4.50397 4.61810 4.79729 4.82462 4.90101 4.96115 5.06505 5.13833 5.18694 5.20503 5.39748 5.50557 5.70013 5.86413 6.07055 6.52868 6.88434 7.00506 7.28921 8.03225 8.46106 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.050693 B = 0.010172 C = 0.008697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.208450 B = 2752.081917 C = 3218.642272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.008 3.992 3 H 0.080 0.920 4 C -0.109 4.109 5 C -0.120 4.120 6 C 0.110 3.890 7 N -0.499 5.499 8 C 0.149 3.851 9 C -0.474 4.474 10 H 0.077 0.923 11 C 0.023 3.977 12 N -0.837 5.837 13 Si 1.005 2.995 14 H -0.263 1.263 15 H -0.269 1.269 16 H -0.256 1.256 17 C -0.184 4.184 18 N -0.518 5.518 19 C 0.097 3.903 20 H 0.037 0.963 21 H 0.091 0.909 22 H 0.041 0.959 23 H 0.059 0.941 24 H 0.110 0.890 25 H 0.118 0.882 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.284 0.716 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.801 0.474 -11.499 11.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.013 4.013 3 H 0.098 0.902 4 C -0.146 4.146 5 C -0.158 4.158 6 C -0.012 4.012 7 N -0.191 5.191 8 C 0.036 3.964 9 C -0.509 4.509 10 H 0.096 0.904 11 C -0.190 4.190 12 N -0.465 5.465 13 Si 0.825 3.175 14 H -0.188 1.188 15 H -0.193 1.193 16 H -0.180 1.180 17 C -0.330 4.330 18 N -0.237 5.237 19 C -0.160 4.160 20 H 0.056 0.944 21 H 0.110 0.890 22 H 0.060 0.940 23 H 0.078 0.922 24 H 0.129 0.871 25 H 0.136 0.864 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.136 0.980 -11.135 11.235 hybrid contribution 1.026 -1.072 0.856 1.714 sum 2.162 -0.092 -10.279 10.504 Atomic orbital electron populations 1.21590 0.93273 1.01111 1.02130 1.19708 0.96399 0.97261 0.87887 0.90238 1.21698 0.94826 1.00985 0.97138 1.21858 0.97593 0.98208 0.98120 1.21803 0.96058 0.99314 0.84067 1.45241 1.30305 1.36302 1.07261 1.19196 0.97826 0.97003 0.82330 1.18687 1.15862 1.21581 0.94734 0.90448 1.26785 0.98098 0.98352 0.95759 1.69758 1.33846 1.38306 1.04635 0.84863 0.77165 0.77152 0.78319 1.18753 1.19328 1.17968 1.23215 1.03512 1.06787 0.99500 1.69195 1.28831 1.24294 1.01387 1.23371 0.95615 1.01367 0.95606 0.94423 0.89047 0.93986 0.92178 0.87124 0.86425 0.91639 0.91457 0.91058 0.90496 0.82354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.90 9.09 71.98 0.65 -3.24 16 2 C 0.01 0.27 3.12 -11.26 -0.04 0.23 16 3 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 4 C -0.11 -2.83 5.28 30.76 0.16 -2.67 16 5 C -0.12 -3.16 5.95 30.73 0.18 -2.98 16 6 C 0.11 4.03 6.71 86.48 0.58 4.61 16 7 N -0.50 -24.84 3.18 -504.30 -1.60 -26.44 16 8 C 0.15 8.79 6.75 39.01 0.26 9.06 16 9 C -0.47 -26.61 9.16 23.16 0.21 -26.40 16 10 H 0.08 4.03 7.79 -2.91 -0.02 4.01 16 11 C 0.02 1.21 5.50 85.28 0.47 1.68 16 12 N -0.84 -47.16 10.35 21.86 0.23 -46.93 16 13 Si 1.01 39.71 29.56 68.60 2.03 41.73 16 14 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 15 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 16 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 17 C -0.18 -11.56 10.89 84.87 0.92 -10.63 16 18 N -0.52 -30.10 11.03 -183.94 -2.03 -32.13 16 19 C 0.10 4.77 7.00 138.06 0.97 5.74 16 20 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 21 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 22 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 23 H 0.06 1.64 8.09 -2.38 -0.02 1.62 16 24 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.06 1.78 8.12 -2.39 -0.02 1.76 16 27 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 29 H 0.28 14.45 8.30 -92.71 -0.77 13.68 16 30 H 0.16 10.49 5.79 -2.91 -0.02 10.48 16 Total: -1.00 -72.25 248.10 4.12 -68.13 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 1.12 Total: 20.24 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: 4.38 Total: -24.61 kcal Atomic # 7 Polarization: -102.10 SS G_CDS: -3.40 Total: -105.50 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.73 kcal Total: -72.25 4.12 -68.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214112869.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.258 kcal (2) G-P(sol) polarization free energy of solvation -72.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds