Wall clock time and date at job start Mon Mar 30 2020 02:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.70562 * 2 1 4 4 C 1.53361 * 109.71203 * 120.58523 * 2 1 3 5 5 C 1.53151 * 109.29659 * 168.67536 * 4 2 1 6 6 C 1.53225 * 109.47197 * 290.53490 * 5 4 2 7 7 N 1.46443 * 108.83545 * 50.17096 * 6 5 4 8 8 C 1.37842 * 127.66344 * 163.00178 * 7 6 5 9 9 C 1.40065 * 127.12465 * 0.10542 * 8 7 6 10 10 H 1.07992 * 120.00382 * 359.97438 * 9 8 7 11 11 C 1.40073 * 119.99410 * 180.02562 * 9 8 7 12 12 N 1.30845 * 120.00471 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99376 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47568 * 59.99690 * 13 11 9 15 15 H 1.48502 * 109.46896 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47190 * 299.99218 * 13 11 9 17 17 C 1.39776 * 105.74670 * 180.12969 * 8 7 6 18 18 N 1.33134 * 107.50999 * 359.96064 * 17 8 7 19 19 C 1.30785 * 110.02354 * 359.97438 * 18 17 8 20 20 H 1.08996 * 109.47640 * 299.40899 * 1 2 3 21 21 H 1.09000 * 109.47541 * 59.41546 * 1 2 3 22 22 H 1.09004 * 109.46900 * 179.41423 * 1 2 3 23 23 H 1.09002 * 109.50708 * 288.63550 * 4 2 1 24 24 H 1.09003 * 109.50595 * 48.71920 * 4 2 1 25 25 H 1.08991 * 109.47781 * 50.47343 * 5 4 2 26 26 H 1.09008 * 109.46848 * 170.48639 * 5 4 2 27 27 H 1.08999 * 109.50026 * 290.40436 * 6 5 4 28 28 H 1.08999 * 109.63218 * 170.01377 * 6 5 4 29 29 H 0.97003 * 120.00424 * 180.02562 * 12 11 9 30 30 H 1.07998 * 126.24501 * 179.97438 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0472 -0.7346 1.2429 5 6 3.5522 -0.9781 1.0971 6 6 3.7973 -2.0179 -0.0014 7 7 3.0536 -1.6239 -1.1998 8 6 3.2352 -2.0744 -2.4898 9 6 4.1752 -3.0135 -2.9328 10 1 4.8585 -3.4666 -2.2299 11 6 4.2297 -3.3642 -4.2878 12 7 3.4021 -2.8149 -5.1396 13 14 5.4829 -4.6172 -4.8785 14 1 5.2571 -5.9093 -4.1823 15 1 5.3352 -4.8123 -6.3433 16 1 6.8522 -4.1265 -4.5797 17 6 2.2873 -1.3995 -3.2643 18 7 1.5986 -0.6027 -2.4499 19 6 2.0398 -0.7253 -1.2248 20 1 -0.3634 0.5046 0.8952 21 1 -0.3634 0.5229 -0.8847 22 1 -0.3633 -1.0277 -0.0105 23 1 1.8609 -0.1272 2.1286 24 1 1.5318 -1.6900 1.3418 25 1 4.0471 -0.0447 0.8294 26 1 3.9541 -1.3448 2.0417 27 1 3.4519 -2.9944 0.3383 28 1 4.8619 -2.0642 -0.2309 29 1 3.4396 -3.0581 -6.0780 30 1 2.1404 -1.5053 -4.3290 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214112921.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:20 Heat of formation + Delta-G solvation = 30.300046 kcal Electronic energy + Delta-G solvation = -13533.983595 eV Core-core repulsion = 11328.919014 eV Total energy + Delta-G solvation = -2205.064581 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.25185 -35.91659 -33.56218 -32.91789 -29.44271 -28.12748 -25.88079 -24.64725 -21.70693 -20.98921 -19.74994 -17.78150 -16.97166 -15.34860 -14.81975 -14.34686 -14.01464 -13.52810 -13.17789 -12.88176 -12.52183 -11.91129 -11.65883 -11.46642 -11.24397 -10.90651 -10.76718 -10.68407 -10.57935 -10.44143 -10.09788 -9.88313 -9.31453 -8.08864 -7.97526 -6.75873 -6.56605 -4.16297 3.00306 3.10329 3.12524 3.74507 3.95140 4.36896 4.77631 5.10760 5.12928 5.25666 5.49028 5.53337 5.80997 5.93122 6.00135 6.07889 6.12607 6.14985 6.23224 6.45051 6.47597 6.70098 6.86076 7.09350 7.20439 7.71640 7.93775 8.08716 8.56685 8.95881 9.12514 9.19862 10.09164 10.39217 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.050687 B = 0.010172 C = 0.008698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.276967 B = 2751.968395 C = 3218.470723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.016 3.984 3 H 0.067 0.933 4 C -0.115 4.115 5 C -0.129 4.129 6 C 0.124 3.876 7 N -0.492 5.492 8 C 0.178 3.822 9 C -0.445 4.445 10 H 0.068 0.932 11 C 0.072 3.928 12 N -0.803 5.803 13 Si 0.923 3.077 14 H -0.268 1.268 15 H -0.278 1.278 16 H -0.268 1.268 17 C -0.135 4.135 18 N -0.478 5.478 19 C 0.078 3.922 20 H 0.045 0.955 21 H 0.063 0.937 22 H 0.049 0.951 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.278 0.722 30 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.822 0.761 8.767 8.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.004 4.004 3 H 0.085 0.915 4 C -0.153 4.153 5 C -0.167 4.167 6 C 0.000 4.000 7 N -0.185 5.185 8 C 0.066 3.934 9 C -0.480 4.480 10 H 0.086 0.914 11 C -0.144 4.144 12 N -0.431 5.431 13 Si 0.749 3.251 14 H -0.193 1.193 15 H -0.203 1.203 16 H -0.193 1.193 17 C -0.284 4.284 18 N -0.196 5.196 19 C -0.175 4.175 20 H 0.064 0.936 21 H 0.082 0.918 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 0.155 1.274 8.390 8.487 hybrid contribution 1.397 -1.253 -0.073 1.878 sum 1.552 0.021 8.317 8.460 Atomic orbital electron populations 1.21641 0.94576 1.01618 1.00904 1.19304 0.95224 0.96921 0.88967 0.91503 1.21676 0.95261 1.00808 0.97585 1.21809 0.97268 0.99612 0.97981 1.21346 0.96574 0.97252 0.84822 1.44883 1.30065 1.36774 1.06784 1.18893 0.97538 0.96375 0.80596 1.18287 1.15378 1.20846 0.93511 0.91407 1.25633 0.96148 0.96500 0.96131 1.69611 1.32405 1.36993 1.04057 0.86129 0.80595 0.80508 0.77913 1.19316 1.20269 1.19314 1.23411 1.01154 1.04104 0.99683 1.69250 1.27468 1.23113 0.99816 1.22044 0.97469 1.03257 0.94741 0.93644 0.91768 0.93137 0.91745 0.91850 0.91449 0.90948 0.92298 0.91084 0.91087 0.79968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 9.09 37.16 0.34 -1.85 16 2 C 0.02 0.30 3.12 -91.34 -0.28 0.02 16 3 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 4 C -0.12 -1.77 5.28 -26.47 -0.14 -1.91 16 5 C -0.13 -1.97 5.95 -26.54 -0.16 -2.12 16 6 C 0.12 2.39 6.71 -3.96 -0.03 2.36 16 7 N -0.49 -12.17 3.18 -110.77 -0.35 -12.52 16 8 C 0.18 5.04 6.75 -83.90 -0.57 4.47 16 9 C -0.44 -12.16 9.16 -38.21 -0.35 -12.51 16 10 H 0.07 1.74 7.79 -52.49 -0.41 1.33 16 11 C 0.07 1.87 5.50 -17.28 -0.10 1.78 16 12 N -0.80 -21.63 10.35 55.56 0.58 -21.05 16 13 Si 0.92 19.30 29.56 -169.99 -5.03 14.27 16 14 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 15 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 16 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 17 C -0.13 -3.99 10.89 -16.41 -0.18 -4.17 16 18 N -0.48 -13.33 11.03 -9.49 -0.10 -13.43 16 19 C 0.08 1.91 7.00 -154.51 -1.08 0.82 16 20 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 22 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 25 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 26 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 30 H 0.18 5.57 5.79 -52.49 -0.30 5.27 16 LS Contribution 248.10 15.07 3.74 3.74 Total: -1.00 -30.95 248.10 -7.78 -38.73 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -4.07 Total: 3.37 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -2.54 Total: -13.11 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 0.12 Total: -47.01 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.95 -7.78 -38.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214112921.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.034 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds