Wall clock time and date at job start Mon Mar 30 2020 02:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 119.99966 * 2 1 4 4 C 1.39675 * 119.99622 * 179.72113 * 2 1 3 5 5 C 1.39029 * 120.02680 * 179.72316 * 4 2 1 6 6 C 1.38176 * 120.10237 * 179.76948 * 5 4 2 7 7 C 1.38119 * 120.16639 * 0.50601 * 6 5 4 8 8 C 1.39120 * 120.05725 * 359.75121 * 7 6 5 9 9 N 1.39293 * 120.05589 * 180.02562 * 8 7 6 10 10 C 1.36858 * 119.99673 * 359.97438 * 9 8 7 11 11 H 1.08000 * 120.00034 * 359.97438 * 10 9 8 12 12 C 1.38792 * 119.99981 * 179.97438 * 10 9 8 13 13 N 1.31587 * 120.00367 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99842 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47251 * 89.99644 * 14 12 10 16 16 H 1.48497 * 109.47067 * 209.99737 * 14 12 10 17 17 H 1.48499 * 109.47099 * 329.99551 * 14 12 10 18 18 C 1.38703 * 120.03135 * 0.02562 * 4 2 1 19 19 H 1.09001 * 109.47091 * 270.28179 * 1 2 3 20 20 H 1.09004 * 109.46622 * 30.27737 * 1 2 3 21 21 H 1.08997 * 109.47201 * 150.27440 * 1 2 3 22 22 H 1.09001 * 109.46777 * 239.72421 * 3 2 1 23 23 H 1.08996 * 109.47313 * 359.72040 * 3 2 1 24 24 H 1.08998 * 109.47521 * 119.72476 * 3 2 1 25 25 H 1.08007 * 119.94778 * 0.02562 * 5 4 2 26 26 H 1.08007 * 119.91893 * 180.23660 * 6 5 4 27 27 H 1.07996 * 119.97315 * 179.76332 * 7 6 5 28 28 H 0.96994 * 120.00190 * 179.97438 * 9 8 7 29 29 H 0.96997 * 120.00916 * 180.02562 * 13 12 10 30 30 H 1.08000 * 120.08063 * 359.95718 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1634 -1.2097 0.0059 5 6 3.5536 -1.2104 0.0001 6 6 4.2460 -2.4061 0.0107 7 6 3.5605 -3.6052 0.0166 8 6 2.1693 -3.6124 0.0170 9 7 1.4779 -4.8216 0.0235 10 6 2.1672 -6.0038 0.0289 11 1 3.2472 -5.9993 0.0277 12 6 1.4784 -7.2087 0.0359 13 7 2.1411 -8.3455 0.0405 14 14 -0.3896 -7.2166 0.0372 15 1 -0.8856 -7.2262 -1.3624 16 1 -0.8790 -8.4274 0.7441 17 1 -0.8892 -6.0026 0.7311 18 6 1.4704 -2.4112 0.0112 19 1 -0.3633 0.0051 1.0277 20 1 -0.3633 0.8875 -0.5182 21 1 -0.3633 -0.8924 -0.5095 22 1 2.8279 1.3243 -0.8875 23 1 1.4893 2.0972 -0.0050 24 1 2.8205 1.3287 0.8924 25 1 4.0933 -0.2749 -0.0086 26 1 5.3261 -2.4032 0.0100 27 1 4.1048 -4.5379 0.0210 28 1 0.5080 -4.8257 0.0242 29 1 1.6598 -9.1877 0.0450 30 1 0.3904 -2.4132 0.0115 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227988128.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:58 Heat of formation + Delta-G solvation = 43.076320 kcal Electronic energy + Delta-G solvation = -12931.380029 eV Core-core repulsion = 10726.869468 eV Total energy + Delta-G solvation = -2204.510561 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.79494 -36.43426 -34.23587 -31.93263 -29.65574 -28.56669 -27.40482 -24.51281 -23.69286 -21.22043 -19.66300 -17.99583 -16.92524 -15.25423 -14.97592 -14.69539 -14.58135 -14.31426 -13.26625 -12.93689 -12.61336 -12.44646 -12.34580 -12.10074 -11.77372 -11.61087 -11.26157 -10.79187 -10.47204 -10.36118 -10.11152 -9.70006 -9.02752 -8.61276 -7.07259 -6.45987 -6.36317 -3.67427 2.55946 2.73131 3.08701 3.11549 3.15100 3.60762 4.09401 4.79289 4.99042 5.23438 5.29774 5.35947 5.52108 5.77127 5.81801 5.85502 5.94443 6.13939 6.45335 6.54118 6.64376 6.70478 7.12935 7.42482 7.52981 7.63034 7.80296 7.92493 8.03860 8.31847 8.70188 9.37631 9.42944 10.76043 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.045992 B = 0.008497 C = 0.007210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.654998 B = 3294.305107 C = 3882.510954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.647 5.647 3 C 0.106 3.894 4 C 0.254 3.746 5 C -0.297 4.297 6 C -0.032 4.032 7 C -0.249 4.249 8 C 0.252 3.748 9 N -0.597 5.597 10 C -0.299 4.299 11 H 0.118 0.882 12 C 0.035 3.965 13 N -0.886 5.886 14 Si 0.882 3.118 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.269 1.269 18 C -0.311 4.311 19 H 0.038 0.962 20 H 0.055 0.945 21 H 0.067 0.933 22 H 0.048 0.952 23 H 0.061 0.939 24 H 0.047 0.953 25 H 0.099 0.901 26 H 0.103 0.897 27 H 0.117 0.883 28 H 0.375 0.625 29 H 0.273 0.727 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.874 13.835 -0.179 14.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.361 5.361 3 C -0.037 4.037 4 C 0.155 3.845 5 C -0.322 4.322 6 C -0.052 4.052 7 C -0.274 4.274 8 C 0.133 3.867 9 N -0.204 5.204 10 C -0.428 4.428 11 H 0.136 0.864 12 C -0.167 4.167 13 N -0.524 5.524 14 Si 0.708 3.292 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.195 1.195 18 C -0.340 4.340 19 H 0.057 0.943 20 H 0.074 0.926 21 H 0.086 0.914 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.066 0.934 25 H 0.117 0.883 26 H 0.121 0.879 27 H 0.135 0.865 28 H 0.209 0.791 29 H 0.084 0.916 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.915 13.413 -0.180 13.727 hybrid contribution -1.393 -0.193 0.036 1.407 sum -4.308 13.220 -0.143 13.905 Atomic orbital electron populations 1.21514 0.80644 1.01885 1.00357 1.46163 1.04272 1.03346 1.82359 1.21408 0.96479 0.85040 1.00803 1.17270 0.90776 0.84078 0.92422 1.19928 0.91543 0.97313 1.23428 1.20417 0.97804 0.91851 0.95111 1.20422 0.92425 0.97759 1.16764 1.17410 0.91490 0.84826 0.92954 1.41188 1.06352 1.03349 1.69510 1.19454 0.94607 0.81486 1.47289 0.86427 1.24966 0.98658 0.95015 0.98086 1.69682 1.35782 0.97299 1.49594 0.86602 0.85331 0.78326 0.78910 1.19675 1.20211 1.19490 1.19654 0.97706 0.90239 1.26389 0.94311 0.92607 0.91432 0.93381 0.91997 0.93405 0.88313 0.87862 0.86493 0.79103 0.91618 0.87939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.28 10.15 59.85 0.61 1.89 16 2 N -0.65 -10.05 3.41 -187.57 -0.64 -10.69 16 3 C 0.11 1.28 9.40 59.85 0.56 1.85 16 4 C 0.25 4.85 6.55 -83.82 -0.55 4.30 16 5 C -0.30 -5.57 9.31 -39.31 -0.37 -5.94 16 6 C -0.03 -0.63 10.03 -39.65 -0.40 -1.02 16 7 C -0.25 -5.61 9.30 -39.30 -0.37 -5.98 16 8 C 0.25 5.82 6.62 -83.87 -0.55 5.27 16 9 N -0.60 -14.62 5.24 -9.62 -0.05 -14.67 16 10 C -0.30 -8.17 10.04 -15.10 -0.15 -8.32 16 11 H 0.12 3.40 5.91 -52.49 -0.31 3.09 16 12 C 0.04 0.96 5.50 -17.45 -0.10 0.87 16 13 N -0.89 -25.51 13.97 55.49 0.77 -24.73 16 14 Si 0.88 20.06 27.73 -169.99 -4.71 15.34 16 15 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.27 -5.81 6.52 56.52 0.37 -5.44 16 18 C -0.31 -6.44 9.05 -39.14 -0.35 -6.79 16 19 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 20 H 0.06 0.57 7.92 -51.93 -0.41 0.16 16 21 H 0.07 0.91 6.19 -51.93 -0.32 0.59 16 22 H 0.05 0.57 7.93 -51.93 -0.41 0.16 16 23 H 0.06 0.58 7.80 -51.93 -0.40 0.18 16 24 H 0.05 0.57 7.97 -51.93 -0.41 0.16 16 25 H 0.10 1.63 6.72 -52.48 -0.35 1.28 16 26 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 27 H 0.12 2.75 5.95 -52.49 -0.31 2.44 16 28 H 0.38 8.62 5.76 -40.82 -0.24 8.39 16 29 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.10 1.97 6.14 -52.49 -0.32 1.65 16 LS Contribution 249.82 15.07 3.76 3.76 Total: -1.00 -29.36 249.82 -6.04 -35.40 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -3.51 Total: 9.46 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -1.66 Total: -13.87 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: 0.09 Total: -50.09 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.71 Total: 15.34 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.36 -6.04 -35.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227988128.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.476 kcal (2) G-P(sol) polarization free energy of solvation -29.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds