Wall clock time and date at job start Mon Mar 30 2020 02:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46905 * 111.00211 * 2 1 4 4 H 1.08994 * 109.46990 * 324.99720 * 3 2 1 5 5 C 1.52999 * 109.46920 * 84.99908 * 3 2 1 6 6 C 1.50701 * 109.46976 * 204.99905 * 3 2 1 7 7 C 1.38625 * 119.33565 * 154.73111 * 6 3 2 8 8 C 1.38024 * 119.41770 * 179.72696 * 7 6 3 9 9 C 1.41098 * 118.19670 * 0.52620 * 8 7 6 10 10 C 1.41410 * 120.65958 * 179.71148 * 9 8 7 11 11 H 1.08001 * 120.00387 * 203.42761 * 10 9 8 12 12 C 1.39955 * 120.00162 * 23.42332 * 10 9 8 13 13 N 1.30824 * 119.99689 * 17.50231 * 12 10 9 14 14 Si 1.86795 * 120.00049 * 197.49824 * 12 10 9 15 15 H 1.48507 * 109.46958 * 90.00363 * 14 12 10 16 16 H 1.48505 * 109.47177 * 210.00029 * 14 12 10 17 17 H 1.48497 * 109.47404 * 330.00122 * 14 12 10 18 18 C 1.40709 * 118.68100 * 359.73550 * 9 8 7 19 19 N 1.31499 * 120.40435 * 359.97438 * 18 9 8 20 20 H 1.08994 * 109.47244 * 300.00463 * 1 2 3 21 21 H 1.09003 * 109.46984 * 60.00176 * 1 2 3 22 22 H 1.09001 * 109.47420 * 180.02562 * 1 2 3 23 23 H 1.00901 * 111.00420 * 236.04289 * 2 1 3 24 24 H 1.09003 * 109.46865 * 299.99763 * 5 3 2 25 25 H 1.08994 * 109.47443 * 60.00089 * 5 3 2 26 26 H 1.09003 * 109.47015 * 180.02562 * 5 3 2 27 27 H 1.07994 * 120.28843 * 359.97438 * 7 6 3 28 28 H 1.07997 * 120.89874 * 180.26319 * 8 7 6 29 29 H 0.97000 * 119.99640 * 179.97438 * 13 12 10 30 30 H 1.07998 * 119.80380 * 179.97438 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3398 2.0123 -0.5895 5 6 2.0608 1.8926 1.4370 6 6 3.3777 1.3789 -0.6005 7 6 3.8581 2.5406 -1.1847 8 6 5.1260 2.5509 -1.7301 9 6 5.8834 1.3615 -1.6790 10 6 7.1859 1.3120 -2.2273 11 1 7.6085 0.3656 -2.5309 12 6 7.9275 2.4895 -2.3767 13 7 7.5853 3.5661 -1.7171 14 14 9.4061 2.5236 -3.5178 15 1 8.9702 2.9195 -4.8811 16 1 10.3996 3.5044 -3.0115 17 1 10.0240 1.1742 -3.5679 18 6 5.3167 0.2255 -1.0722 19 7 4.1050 0.2772 -0.5639 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8306 -0.5262 -0.7813 24 1 1.0610 1.8872 1.8712 25 1 2.7164 1.2518 2.0265 26 1 2.4511 2.9104 1.4370 27 1 3.2473 3.4308 -1.2092 28 1 5.5258 3.4439 -2.1873 29 1 8.0995 4.3821 -1.8204 30 1 5.8802 -0.6945 -1.0235 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238329741.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:40 Heat of formation + Delta-G solvation = 17.798655 kcal Electronic energy + Delta-G solvation = -12988.978591 eV Core-core repulsion = 10783.371908 eV Total energy + Delta-G solvation = -2205.606682 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.62548 -35.97254 -33.93042 -30.94389 -30.50294 -28.89598 -25.85596 -24.51350 -22.29072 -21.35099 -19.73369 -17.36124 -16.05049 -15.45214 -14.97636 -14.11493 -13.86494 -13.50506 -13.27187 -12.77461 -12.44677 -11.96738 -11.78099 -11.64461 -11.46079 -11.21586 -11.02918 -10.92014 -10.66329 -10.35480 -9.75084 -9.37879 -8.22242 -8.03121 -7.83814 -7.57019 -6.88134 -4.50212 2.58406 2.94920 3.00690 3.03808 3.16201 3.82604 4.52909 4.77935 5.45588 5.53001 5.70366 5.72085 5.80305 6.07642 6.15555 6.17009 6.30328 6.35181 6.68238 6.78135 6.84518 6.94189 7.06495 7.24977 7.55610 7.67310 7.85535 7.93105 8.02889 8.42295 8.65434 8.71001 9.67051 10.02687 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.074370 B = 0.007399 C = 0.007050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.406354 B = 3783.291904 C = 3970.554817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.678 5.678 3 C 0.159 3.841 4 H 0.036 0.964 5 C -0.129 4.129 6 C -0.025 4.025 7 C -0.141 4.141 8 C -0.138 4.138 9 C 0.063 3.937 10 C -0.449 4.449 11 H 0.083 0.917 12 C 0.074 3.926 13 N -0.789 5.789 14 Si 0.913 3.087 15 H -0.267 1.267 16 H -0.277 1.277 17 H -0.260 1.260 18 C -0.019 4.019 19 N -0.447 5.447 20 H 0.058 0.942 21 H 0.013 0.987 22 H 0.060 0.940 23 H 0.350 0.650 24 H 0.042 0.958 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.095 0.905 28 H 0.126 0.874 29 H 0.283 0.717 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.417 -0.293 -0.248 5.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.310 5.310 3 C 0.048 3.952 4 H 0.054 0.946 5 C -0.187 4.187 6 C -0.163 4.163 7 C -0.162 4.162 8 C -0.164 4.164 9 C 0.059 3.941 10 C -0.479 4.479 11 H 0.101 0.899 12 C -0.145 4.145 13 N -0.414 5.414 14 Si 0.737 3.263 15 H -0.192 1.192 16 H -0.202 1.202 17 H -0.184 1.184 18 C -0.182 4.182 19 N -0.155 5.155 20 H 0.077 0.923 21 H 0.031 0.969 22 H 0.079 0.921 23 H 0.169 0.831 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.113 0.887 28 H 0.144 0.856 29 H 0.094 0.906 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.656 -0.845 0.877 5.785 hybrid contribution 0.941 1.306 -1.755 2.381 sum -4.715 0.460 -0.879 4.818 Atomic orbital electron populations 1.22235 0.89596 1.00922 0.99542 1.60293 1.05414 1.14233 1.51042 1.19988 0.91444 0.88538 0.95190 0.94627 1.21730 1.00454 1.00178 0.96335 1.20117 0.96707 0.91053 1.08391 1.21352 0.96900 0.97092 1.00827 1.21639 0.92447 0.99853 1.02487 1.18551 0.93617 0.92228 0.89740 1.19596 0.98535 0.94425 1.35351 0.89877 1.25993 0.99256 0.94905 0.94333 1.69801 1.37537 1.02314 1.31736 0.86223 0.80078 0.79399 0.80568 1.19181 1.20193 1.18389 1.22466 0.92997 0.98762 1.03953 1.66683 1.06454 1.27665 1.14670 0.92330 0.96895 0.92136 0.83077 0.93847 0.92080 0.93015 0.88687 0.85610 0.90578 0.85646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.50 60.06 0.63 1.01 16 2 N -0.68 -12.13 6.40 -115.25 -0.74 -12.86 16 3 C 0.16 3.02 2.86 -68.86 -0.20 2.82 16 4 H 0.04 0.65 7.76 -51.93 -0.40 0.24 16 5 C -0.13 -2.26 9.40 37.16 0.35 -1.91 16 6 C -0.02 -0.57 5.72 -82.35 -0.47 -1.04 16 7 C -0.14 -3.30 9.73 -39.52 -0.38 -3.68 16 8 C -0.14 -3.55 8.82 -38.58 -0.34 -3.89 16 9 C 0.06 1.66 5.60 -106.67 -0.60 1.06 16 10 C -0.45 -11.55 9.09 -37.73 -0.34 -11.89 16 11 H 0.08 2.03 7.90 -52.49 -0.41 1.62 16 12 C 0.07 1.79 5.18 -17.34 -0.09 1.70 16 13 N -0.79 -19.81 10.91 55.55 0.61 -19.21 16 14 Si 0.91 18.01 29.59 -169.99 -5.03 12.98 16 15 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 16 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 17 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 18 C -0.02 -0.49 10.98 -16.76 -0.18 -0.67 16 19 N -0.45 -10.88 9.24 -8.78 -0.08 -10.96 16 20 H 0.06 0.77 7.43 -51.93 -0.39 0.38 16 21 H 0.01 0.17 8.06 -51.93 -0.42 -0.25 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.35 6.58 7.92 -39.29 -0.31 6.27 16 24 H 0.04 0.65 7.45 -51.93 -0.39 0.27 16 25 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.09 1.97 8.06 -52.49 -0.42 1.55 16 28 H 0.13 3.28 6.18 -52.49 -0.32 2.96 16 29 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 30 H 0.13 2.94 8.06 -52.49 -0.42 2.52 16 LS Contribution 256.87 15.07 3.87 3.87 Total: -1.00 -27.00 256.87 -6.89 -33.89 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -3.89 Total: 8.77 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -1.63 Total: -16.48 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: -0.21 Total: -43.03 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -27.00 -6.89 -33.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238329741.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.689 kcal (2) G-P(sol) polarization free energy of solvation -26.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds