Wall clock time and date at job start Mon Mar 30 2020 02:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30414 * 125.25073 * 2 1 4 4 C 1.36269 * 109.19704 * 179.97438 * 3 2 1 5 5 C 1.41222 * 126.56756 * 179.97438 * 4 3 2 6 6 H 1.07991 * 120.00236 * 174.33435 * 5 4 3 7 7 C 1.39722 * 119.99753 * 354.32869 * 5 4 3 8 8 N 1.31014 * 120.00465 * 6.02868 * 7 5 4 9 9 Si 1.86803 * 119.99646 * 186.02396 * 7 5 4 10 10 H 1.48494 * 109.47138 * 94.98737 * 9 7 5 11 11 H 1.48500 * 109.47134 * 214.98404 * 9 7 5 12 12 H 1.48499 * 109.47516 * 334.98449 * 9 7 5 13 13 C 1.38245 * 106.86420 * 359.97438 * 4 3 2 14 14 N 1.35467 * 125.25407 * 180.02562 * 2 1 3 15 15 C 1.46564 * 128.12642 * 0.09196 * 14 2 1 16 16 C 1.53250 * 108.74153 * 162.61435 * 15 14 2 17 17 C 1.53136 * 109.71198 * 50.78090 * 16 15 14 18 18 C 1.50606 * 128.68686 * 180.13146 * 13 4 3 19 19 H 1.09000 * 109.47251 * 89.97332 * 1 2 3 20 20 H 1.09005 * 109.46610 * 209.97001 * 1 2 3 21 21 H 1.08996 * 109.46886 * 329.96749 * 1 2 3 22 22 H 0.96995 * 120.00131 * 179.97438 * 8 7 5 23 23 H 1.09009 * 109.59358 * 282.39083 * 15 14 2 24 24 H 1.09005 * 109.59539 * 42.83099 * 15 14 2 25 25 H 1.09003 * 109.42859 * 290.71194 * 16 15 14 26 26 H 1.08999 * 109.43411 * 170.85437 * 16 15 14 27 27 H 1.08998 * 109.51059 * 170.40633 * 17 16 15 28 28 H 1.08999 * 109.51367 * 50.25694 * 17 16 15 29 29 H 1.09001 * 109.74515 * 283.93275 * 18 13 4 30 30 H 1.09002 * 109.74905 * 44.65955 * 18 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2597 1.0650 0.0000 4 6 3.5692 0.6882 0.0006 5 6 4.6914 1.5455 0.0003 6 1 5.6855 1.1339 0.0931 7 6 4.5155 2.9264 -0.1203 8 7 3.3087 3.4361 -0.1142 9 14 6.0014 4.0458 -0.2901 10 1 6.2601 4.3102 -1.7282 11 1 5.7370 5.3288 0.4093 12 1 7.1881 3.3883 0.3136 13 6 3.5888 -0.6941 0.0015 14 7 2.2889 -1.1062 -0.0005 15 6 1.8697 -2.5106 -0.0030 16 6 3.0565 -3.3780 -0.4362 17 6 4.2897 -3.0199 0.3981 18 6 4.7776 -1.6188 0.0052 19 1 -0.3634 0.0005 -1.0277 20 1 -0.3633 -0.8903 0.5134 21 1 -0.3633 0.8897 0.5143 22 1 3.1866 4.3947 -0.1975 23 1 1.5527 -2.7993 0.9993 24 1 1.0444 -2.6446 -0.7024 25 1 3.2685 -3.2017 -1.4908 26 1 2.8108 -4.4294 -0.2873 27 1 5.0799 -3.7468 0.2102 28 1 4.0288 -3.0300 1.4563 29 1 5.2224 -1.6506 -0.9894 30 1 5.5145 -1.2685 0.7279 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258541550.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:51 Heat of formation + Delta-G solvation = 38.993356 kcal Electronic energy + Delta-G solvation = -13512.216948 eV Core-core repulsion = 11307.529336 eV Total energy + Delta-G solvation = -2204.687611 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.32470 -35.67052 -33.32761 -31.56088 -29.92775 -28.57309 -26.92801 -23.77989 -22.94220 -20.59004 -19.32740 -17.66731 -16.77020 -14.92095 -14.79606 -14.48206 -13.65789 -13.36980 -13.23905 -12.82200 -12.47233 -12.10100 -12.02222 -11.60801 -11.13176 -10.97327 -10.77093 -10.50081 -10.34230 -10.26112 -10.03654 -9.74496 -9.02574 -7.89926 -7.75526 -6.67421 -6.11650 -3.87162 3.18825 3.30943 3.34650 3.57709 4.13153 4.31186 4.69308 5.08902 5.16054 5.32242 5.69195 5.76935 5.78894 5.82852 5.93672 5.97125 6.08107 6.25007 6.28223 6.37487 6.49104 6.63034 6.76464 6.85383 7.37084 7.62980 7.91961 8.14340 8.56647 8.89486 9.24017 9.43880 10.14317 10.83016 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.038314 B = 0.011480 C = 0.008997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.625951 B = 2438.346982 C = 3111.434661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.159 3.841 3 N -0.456 5.456 4 C 0.205 3.795 5 C -0.452 4.452 6 H 0.074 0.926 7 C 0.076 3.924 8 N -0.774 5.774 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.267 1.267 13 C -0.196 4.196 14 N -0.465 5.465 15 C 0.118 3.882 16 C -0.125 4.125 17 C -0.119 4.119 18 C -0.005 4.005 19 H 0.059 0.941 20 H 0.051 0.949 21 H 0.077 0.923 22 H 0.264 0.736 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.790 -9.751 -0.069 9.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.101 4.101 3 N -0.179 5.179 4 C 0.081 3.919 5 C -0.488 4.488 6 H 0.092 0.908 7 C -0.142 4.142 8 N -0.400 5.400 9 Si 0.724 3.276 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.191 1.191 13 C -0.303 4.303 14 N -0.158 5.158 15 C -0.007 4.007 16 C -0.163 4.163 17 C -0.157 4.157 18 C -0.044 4.044 19 H 0.078 0.922 20 H 0.070 0.930 21 H 0.096 0.904 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.254 -8.863 -0.074 9.146 hybrid contribution 0.873 -0.319 -0.115 0.937 sum -1.381 -9.182 -0.189 9.287 Atomic orbital electron populations 1.19884 0.87852 1.01885 1.01408 1.23214 0.94592 0.82383 1.09935 1.71383 1.02303 1.23713 1.20531 1.18022 0.90339 0.87561 0.95958 1.18427 0.91833 0.90167 1.48324 0.90805 1.25758 0.95945 0.98683 0.93834 1.70113 1.21324 1.12096 1.36504 0.86496 0.82768 0.79778 0.78596 1.20134 1.20761 1.19080 1.20688 0.83496 0.94790 1.31370 1.44541 1.06652 1.04249 1.60337 1.21472 0.97202 0.81499 1.00487 1.21746 0.95369 0.98240 1.00935 1.21611 0.96644 0.97989 0.99439 1.19527 0.94199 0.90693 0.99942 0.92184 0.92962 0.90433 0.92519 0.92254 0.91429 0.91458 0.91406 0.92348 0.92373 0.93195 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.95 10.23 36.00 0.37 -0.58 16 2 C 0.16 3.87 7.91 -155.10 -1.23 2.65 16 3 N -0.46 -13.36 9.56 -8.38 -0.08 -13.44 16 4 C 0.20 6.01 6.67 -84.76 -0.57 5.45 16 5 C -0.45 -13.28 9.23 -37.89 -0.35 -13.63 16 6 H 0.07 2.05 7.85 -52.49 -0.41 1.64 16 7 C 0.08 2.15 5.49 -17.35 -0.10 2.05 16 8 N -0.77 -23.00 11.98 55.54 0.67 -22.34 16 9 Si 0.90 20.76 29.56 -169.99 -5.03 15.73 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 C -0.20 -4.93 6.69 -80.62 -0.54 -5.47 16 14 N -0.46 -10.50 3.14 -108.25 -0.34 -10.84 16 15 C 0.12 1.96 6.56 -3.88 -0.03 1.93 16 16 C -0.13 -1.85 5.91 -26.53 -0.16 -2.00 16 17 C -0.12 -1.91 5.96 -26.41 -0.16 -2.07 16 18 C -0.01 -0.11 6.15 -27.68 -0.17 -0.28 16 19 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 20 H 0.05 0.79 7.92 -51.93 -0.41 0.38 16 21 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 22 H 0.26 7.22 8.30 -40.82 -0.34 6.88 16 23 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 24 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 251.79 15.07 3.79 3.79 Total: -1.00 -33.58 251.79 -8.09 -41.67 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -4.18 Total: -2.63 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -2.92 Total: -11.95 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.25 Total: -46.62 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -33.58 -8.09 -41.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258541550.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.663 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds