Wall clock time and date at job start Mon Mar 30 2020 02:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30414 * 125.25073 * 2 1 4 4 C 1.36269 * 109.19704 * 179.97438 * 3 2 1 5 5 C 1.41222 * 126.56756 * 179.97438 * 4 3 2 6 6 H 1.07991 * 120.00236 * 174.33435 * 5 4 3 7 7 C 1.39722 * 119.99753 * 354.32869 * 5 4 3 8 8 N 1.31014 * 120.00465 * 6.02868 * 7 5 4 9 9 Si 1.86803 * 119.99646 * 186.02396 * 7 5 4 10 10 H 1.48494 * 109.47138 * 94.98737 * 9 7 5 11 11 H 1.48500 * 109.47134 * 214.98404 * 9 7 5 12 12 H 1.48499 * 109.47516 * 334.98449 * 9 7 5 13 13 C 1.38245 * 106.86420 * 359.97438 * 4 3 2 14 14 N 1.35467 * 125.25407 * 180.02562 * 2 1 3 15 15 C 1.46564 * 128.12642 * 0.09196 * 14 2 1 16 16 C 1.53250 * 108.74153 * 162.61435 * 15 14 2 17 17 C 1.53136 * 109.71198 * 50.78090 * 16 15 14 18 18 C 1.50606 * 128.68686 * 180.13146 * 13 4 3 19 19 H 1.09000 * 109.47251 * 89.97332 * 1 2 3 20 20 H 1.09005 * 109.46610 * 209.97001 * 1 2 3 21 21 H 1.08996 * 109.46886 * 329.96749 * 1 2 3 22 22 H 0.96995 * 120.00131 * 179.97438 * 8 7 5 23 23 H 1.09009 * 109.59358 * 282.39083 * 15 14 2 24 24 H 1.09005 * 109.59539 * 42.83099 * 15 14 2 25 25 H 1.09003 * 109.42859 * 290.71194 * 16 15 14 26 26 H 1.08999 * 109.43411 * 170.85437 * 16 15 14 27 27 H 1.08998 * 109.51059 * 170.40633 * 17 16 15 28 28 H 1.08999 * 109.51367 * 50.25694 * 17 16 15 29 29 H 1.09001 * 109.74515 * 283.93275 * 18 13 4 30 30 H 1.09002 * 109.74905 * 44.65955 * 18 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2597 1.0650 0.0000 4 6 3.5692 0.6882 0.0006 5 6 4.6914 1.5455 0.0003 6 1 5.6855 1.1339 0.0931 7 6 4.5155 2.9264 -0.1203 8 7 3.3087 3.4361 -0.1142 9 14 6.0014 4.0458 -0.2901 10 1 6.2601 4.3102 -1.7282 11 1 5.7370 5.3288 0.4093 12 1 7.1881 3.3883 0.3136 13 6 3.5888 -0.6941 0.0015 14 7 2.2889 -1.1062 -0.0005 15 6 1.8697 -2.5106 -0.0030 16 6 3.0565 -3.3780 -0.4362 17 6 4.2897 -3.0199 0.3981 18 6 4.7776 -1.6188 0.0052 19 1 -0.3634 0.0005 -1.0277 20 1 -0.3633 -0.8903 0.5134 21 1 -0.3633 0.8897 0.5143 22 1 3.1866 4.3947 -0.1975 23 1 1.5527 -2.7993 0.9993 24 1 1.0444 -2.6446 -0.7024 25 1 3.2685 -3.2017 -1.4908 26 1 2.8108 -4.4294 -0.2873 27 1 5.0799 -3.7468 0.2102 28 1 4.0288 -3.0300 1.4563 29 1 5.2224 -1.6506 -0.9894 30 1 5.5145 -1.2685 0.7279 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258541550.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:51 Heat of formation + Delta-G solvation = 17.581285 kcal Electronic energy + Delta-G solvation = -13513.145445 eV Core-core repulsion = 11307.529336 eV Total energy + Delta-G solvation = -2205.616108 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.14516 -37.17611 -35.29151 -33.35703 -31.55205 -30.17085 -28.86525 -25.49948 -24.51498 -22.20220 -21.16314 -19.29615 -18.74806 -16.75300 -16.46480 -16.23482 -15.12353 -14.83093 -14.69398 -14.58831 -14.07950 -13.75821 -13.53447 -13.11224 -12.94581 -12.80238 -12.37414 -12.19721 -11.89243 -11.82484 -11.56181 -11.50242 -11.02273 -9.87993 -9.66541 -8.66813 -8.17867 -5.99405 1.34963 1.40158 1.54783 1.73670 2.34645 2.54381 2.67300 3.73577 3.83641 3.93133 4.02588 4.14454 4.42959 4.48639 4.51173 4.61748 4.83810 4.86217 4.94590 5.05725 5.07274 5.12075 5.14636 5.38918 5.42430 5.63686 5.99727 6.18853 6.48025 7.01837 7.21696 7.39010 8.19160 8.79188 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.038314 B = 0.011480 C = 0.008997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.625951 B = 2438.346982 C = 3111.434661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C 0.143 3.857 3 N -0.515 5.515 4 C 0.141 3.859 5 C -0.489 4.489 6 H 0.072 0.928 7 C 0.021 3.979 8 N -0.821 5.821 9 Si 0.978 3.022 10 H -0.269 1.269 11 H -0.274 1.274 12 H -0.258 1.258 13 C -0.187 4.187 14 N -0.462 5.462 15 C 0.103 3.897 16 C -0.121 4.121 17 C -0.112 4.112 18 C -0.011 4.011 19 H 0.076 0.924 20 H 0.090 0.910 21 H 0.070 0.930 22 H 0.266 0.734 23 H 0.081 0.919 24 H 0.094 0.906 25 H 0.058 0.942 26 H 0.115 0.885 27 H 0.092 0.908 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.907 -12.296 -0.156 12.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.117 4.117 3 N -0.239 5.239 4 C 0.017 3.983 5 C -0.525 4.525 6 H 0.090 0.910 7 C -0.192 4.192 8 N -0.449 5.449 9 Si 0.800 3.200 10 H -0.194 1.194 11 H -0.199 1.199 12 H -0.181 1.181 13 C -0.297 4.297 14 N -0.152 5.152 15 C -0.018 4.018 16 C -0.158 4.158 17 C -0.149 4.149 18 C -0.050 4.050 19 H 0.095 0.905 20 H 0.109 0.891 21 H 0.088 0.912 22 H 0.076 0.924 23 H 0.099 0.901 24 H 0.113 0.887 25 H 0.077 0.923 26 H 0.133 0.867 27 H 0.110 0.890 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.391 -11.467 -0.159 11.715 hybrid contribution 0.831 0.278 -0.079 0.880 sum -1.560 -11.189 -0.238 11.300 Atomic orbital electron populations 1.20011 0.83902 1.03431 1.02962 1.24145 0.96841 0.82199 1.08562 1.71229 1.03010 1.26908 1.22781 1.18581 0.90898 0.89903 0.98894 1.18749 0.92113 0.91496 1.50128 0.90963 1.26688 0.99311 1.00008 0.93151 1.70267 1.23797 1.12353 1.38505 0.85272 0.78580 0.77365 0.78755 1.19439 1.19949 1.18125 1.21306 0.86022 0.94402 1.27941 1.44881 1.05477 1.06600 1.58235 1.22019 0.99060 0.78049 1.02716 1.21794 0.93691 1.00420 0.99919 1.21585 0.98414 0.95380 0.99559 1.19668 0.92406 0.92937 0.99941 0.90487 0.89094 0.91153 0.92448 0.90083 0.88737 0.92309 0.86663 0.88957 0.92434 0.93038 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.57 10.23 71.24 0.73 -0.84 16 2 C 0.14 7.01 7.91 138.02 1.09 8.10 16 3 N -0.51 -31.37 9.56 -180.42 -1.73 -33.10 16 4 C 0.14 8.65 6.67 39.19 0.26 8.91 16 5 C -0.49 -30.17 9.23 23.36 0.22 -29.95 16 6 H 0.07 4.22 7.85 -2.91 -0.02 4.20 16 7 C 0.02 1.26 5.49 85.17 0.47 1.72 16 8 N -0.82 -51.27 11.98 21.79 0.26 -51.01 16 9 Si 0.98 44.34 29.56 68.60 2.03 46.37 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 12 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 13 C -0.19 -9.47 6.69 41.83 0.28 -9.20 16 14 N -0.46 -20.25 3.14 -496.41 -1.56 -21.81 16 15 C 0.10 3.01 6.56 86.45 0.57 3.58 16 16 C -0.12 -3.00 5.91 30.72 0.18 -2.82 16 17 C -0.11 -3.18 5.96 30.80 0.18 -3.00 16 18 C -0.01 -0.44 6.15 29.98 0.18 -0.26 16 19 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 20 H 0.09 2.45 7.92 -2.38 -0.02 2.43 16 21 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 22 H 0.27 15.26 8.30 -92.71 -0.77 14.49 16 23 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 24 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 25 H 0.06 1.59 8.12 -2.39 -0.02 1.57 16 26 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.06 1.66 8.12 -2.39 -0.02 1.64 16 29 H 0.05 2.03 8.14 -2.39 -0.02 2.02 16 30 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -78.56 251.79 4.28 -74.27 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 1.12 Total: 9.02 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: 4.16 Total: -23.75 kcal Atomic # 7 Polarization: -102.89 SS G_CDS: -3.02 Total: -105.92 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -78.56 4.28 -74.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258541550.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.855 kcal (2) G-P(sol) polarization free energy of solvation -78.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds