Wall clock time and date at job start Mon Mar 30 2020 02:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.38622 * 120.44599 * 85.00181 * 4 2 1 6 6 C 1.38576 * 118.39767 * 180.02562 * 5 4 2 7 7 N 1.32347 * 119.10941 * 359.97438 * 6 5 4 8 8 C 1.31784 * 120.81506 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.12345 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46628 * 90.00165 * 9 8 7 11 11 H 1.08000 * 120.00334 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99570 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00366 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00009 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47085 * 89.99800 * 14 12 10 16 16 H 1.48496 * 109.47359 * 209.99976 * 14 12 10 17 17 H 1.48507 * 109.46884 * 330.00323 * 14 12 10 18 18 N 1.31815 * 121.75482 * 359.72508 * 8 7 6 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 22 22 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 23 23 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 24 24 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 26 26 H 1.08005 * 120.80109 * 0.02562 * 5 4 2 27 27 H 1.08004 * 120.44663 * 179.97438 * 6 5 4 28 28 H 1.08996 * 109.47261 * 210.00608 * 9 8 7 29 29 H 1.09004 * 109.46940 * 330.00913 * 9 8 7 30 30 H 0.97005 * 120.00168 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.1684 -0.0280 -2.4293 6 6 2.6337 -0.7230 -3.5341 7 7 2.9312 -2.0065 -3.4090 8 6 2.7902 -2.6225 -2.2525 9 6 3.1399 -4.0851 -2.1531 10 6 4.5914 -4.2298 -1.7747 11 1 5.1998 -3.3508 -1.6211 12 6 5.1428 -5.4846 -1.6246 13 7 4.4022 -6.5551 -1.8121 14 14 6.9418 -5.6642 -1.1548 15 1 7.0655 -5.7048 0.3244 16 1 7.4808 -6.9221 -1.7313 17 1 7.7094 -4.5083 -1.6841 18 7 2.3561 -1.9924 -1.1792 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 1.8934 -0.5137 0.8900 23 1 1.6767 1.9563 0.8899 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.9178 1.0202 -2.5005 27 1 2.7519 -0.2240 -4.4847 28 1 2.5173 -4.5566 -1.3928 29 1 2.9655 -4.5665 -3.1154 30 1 4.7902 -7.4379 -1.7069 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259161036.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:23 Heat of formation + Delta-G solvation = 3.722366 kcal Electronic energy + Delta-G solvation = -12899.194948 eV Core-core repulsion = 10692.977871 eV Total energy + Delta-G solvation = -2206.217076 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.97278 -37.23016 -35.47436 -34.10161 -32.67064 -29.98962 -28.02577 -26.10950 -25.40118 -23.62092 -21.11341 -18.66627 -18.55366 -17.42964 -16.62129 -15.91492 -15.86680 -15.13831 -14.83257 -14.34255 -14.28349 -13.77473 -13.54716 -12.97929 -12.86676 -12.66726 -12.42260 -12.24940 -12.19232 -11.91030 -11.70644 -11.43498 -11.23631 -10.66445 -10.14569 -10.02775 -8.27348 -6.39644 0.08882 0.31143 1.36536 1.39311 1.50335 2.35800 2.93302 3.03134 3.10486 3.38100 3.63878 4.09950 4.11907 4.25456 4.27396 4.52650 4.71847 4.76085 4.83366 4.93979 4.98357 5.16249 5.18347 5.31625 5.35837 5.40179 5.61395 5.63952 6.02549 6.32003 6.65630 7.26885 7.39872 8.84557 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.041912 B = 0.007839 C = 0.007553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.912759 B = 3571.132056 C = 3706.002927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.050 4.050 3 C -0.137 4.137 4 C 0.160 3.840 5 C -0.235 4.235 6 C 0.133 3.867 7 N -0.556 5.556 8 C 0.335 3.665 9 C 0.089 3.911 10 C -0.526 4.526 11 H 0.043 0.957 12 C 0.009 3.991 13 N -0.925 5.925 14 Si 0.973 3.027 15 H -0.269 1.269 16 H -0.271 1.271 17 H -0.270 1.270 18 N -0.551 5.551 19 H 0.034 0.966 20 H 0.070 0.930 21 H 0.089 0.911 22 H 0.073 0.927 23 H 0.086 0.914 24 H 0.047 0.953 25 H 0.080 0.920 26 H 0.188 0.812 27 H 0.203 0.797 28 H 0.019 0.981 29 H 0.021 0.979 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.759 17.029 1.673 18.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.069 4.069 3 C -0.195 4.195 4 C 0.014 3.986 5 C -0.256 4.256 6 C -0.031 4.031 7 N -0.271 5.271 8 C 0.069 3.931 9 C 0.050 3.950 10 C -0.565 4.565 11 H 0.061 0.939 12 C -0.190 4.190 13 N -0.564 5.564 14 Si 0.796 3.204 15 H -0.194 1.194 16 H -0.196 1.196 17 H -0.194 1.194 18 N -0.266 5.266 19 H 0.054 0.946 20 H 0.089 0.911 21 H 0.108 0.892 22 H 0.092 0.908 23 H 0.105 0.895 24 H 0.066 0.934 25 H 0.099 0.901 26 H 0.205 0.795 27 H 0.219 0.781 28 H 0.037 0.963 29 H 0.039 0.961 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.528 15.873 1.725 16.896 hybrid contribution 0.638 0.047 0.039 0.641 sum -4.890 15.920 1.764 16.748 Atomic orbital electron populations 1.21754 0.91859 1.01548 1.03922 1.20240 0.97496 0.96656 0.92511 1.21874 1.00783 0.92529 1.04298 1.22479 0.89979 0.89082 0.97061 1.23008 1.04759 1.04219 0.93611 1.23985 0.89518 0.88922 1.00718 1.68311 1.18622 1.12532 1.27620 1.23575 0.87572 0.98263 0.83662 1.17827 0.96673 0.83708 0.96769 1.20998 0.94698 0.92464 1.48356 0.93870 1.25894 1.03363 0.94981 0.94728 1.70061 1.38266 0.98491 1.49616 0.85338 0.78300 0.77974 0.78747 1.19422 1.19587 1.19433 1.68162 1.14649 1.11453 1.32336 0.94634 0.91108 0.89171 0.90810 0.89545 0.93390 0.90089 0.79492 0.78062 0.96319 0.96116 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.18 71.98 0.66 -2.05 16 2 C -0.05 -1.24 3.27 -11.54 -0.04 -1.28 16 3 C -0.14 -2.31 8.64 71.98 0.62 -1.69 16 4 C 0.16 5.48 5.82 42.58 0.25 5.73 16 5 C -0.23 -6.52 9.26 22.44 0.21 -6.31 16 6 C 0.13 4.31 11.30 84.70 0.96 5.26 16 7 N -0.56 -25.24 10.33 -187.84 -1.94 -27.18 16 8 C 0.34 17.07 6.83 138.75 0.95 18.02 16 9 C 0.09 5.26 5.41 29.10 0.16 5.41 16 10 C -0.53 -32.41 9.09 25.60 0.23 -32.18 16 11 H 0.04 2.67 7.74 -2.91 -0.02 2.64 16 12 C 0.01 0.55 5.46 84.65 0.46 1.01 16 13 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 14 Si 0.97 46.07 29.54 68.60 2.03 48.10 16 15 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 16 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 17 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 18 N -0.55 -25.47 10.27 -176.01 -1.81 -27.27 16 19 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 20 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 21 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 22 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 23 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.08 1.02 6.58 -2.39 -0.02 1.00 16 26 H 0.19 3.18 6.44 -2.91 -0.02 3.16 16 27 H 0.20 4.44 8.06 -2.91 -0.02 4.42 16 28 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 Total: -1.00 -74.64 261.28 4.13 -70.51 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: 1.11 Total: 1.01 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 4.46 Total: -8.06 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -3.46 Total: -111.56 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -74.64 4.13 -70.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259161036.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.230 kcal (2) G-P(sol) polarization free energy of solvation -74.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds