Wall clock time and date at job start Mon Mar 30 2020 02:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36938 * 119.99805 * 2 1 4 4 H 1.08001 * 119.99994 * 203.47866 * 3 2 1 5 5 C 1.38817 * 120.00209 * 23.48233 * 3 2 1 6 6 N 1.31621 * 119.99559 * 15.03107 * 5 3 2 7 7 Si 1.86798 * 120.00192 * 195.03165 * 5 3 2 8 8 H 1.48506 * 109.46911 * 60.00082 * 7 5 3 9 9 H 1.48495 * 109.47156 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47165 * 300.00034 * 7 5 3 11 11 C 1.46496 * 120.00046 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.83124 * 179.30230 * 11 2 1 13 13 C 1.54455 * 110.93736 * 303.01008 * 11 2 1 14 14 C 1.51292 * 104.95738 * 143.82954 * 13 11 2 15 15 C 1.41110 * 142.08250 * 163.10871 * 14 13 11 16 16 C 1.34757 * 107.41950 * 180.02562 * 15 14 13 17 17 N 1.36232 * 108.22959 * 0.02562 * 16 15 14 18 18 H 0.97001 * 125.61326 * 179.97438 * 17 16 15 19 19 C 1.34652 * 110.43123 * 343.11227 * 14 13 11 20 20 C 1.51408 * 110.27441 * 359.97438 * 19 14 13 21 21 H 1.08998 * 109.46975 * 275.20934 * 1 2 3 22 22 H 1.09000 * 109.46985 * 35.20695 * 1 2 3 23 23 H 1.08999 * 109.46670 * 155.20778 * 1 2 3 24 24 H 0.97003 * 119.99768 * 179.97438 * 6 5 3 25 25 H 1.09002 * 110.34123 * 262.69633 * 13 11 2 26 26 H 1.08994 * 110.34350 * 24.85658 * 13 11 2 27 27 H 1.08000 * 126.28674 * 359.97438 * 15 14 13 28 28 H 1.07998 * 125.88532 * 180.02562 * 16 15 14 29 29 H 1.09005 * 110.33452 * 258.03903 * 20 19 14 30 30 H 1.08998 * 110.34201 * 135.79399 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1626 1.2247 -0.3726 5 6 1.5418 2.3384 0.4790 6 7 0.4418 2.2525 1.1966 7 14 2.2850 4.0109 0.1052 8 1 2.3316 4.2144 -1.3651 9 1 1.4521 5.0724 0.7253 10 1 3.6619 4.0754 0.6577 11 6 2.1975 -1.2687 -0.0006 12 1 3.2736 -1.0950 -0.0129 13 6 1.7929 -2.1402 1.2087 14 6 1.8141 -3.5614 0.6904 15 6 1.8438 -4.9040 1.1236 16 6 1.8474 -5.6828 0.0238 17 7 1.8217 -4.8733 -1.0716 18 1 1.8185 -5.1718 -1.9946 19 6 1.8002 -3.5709 -0.6560 20 6 1.7675 -2.1546 -1.1904 21 1 -0.3633 0.0933 1.0234 22 1 -0.3633 0.8397 -0.5925 23 1 -0.3632 -0.9330 -0.4309 24 1 0.0172 3.0577 1.5317 25 1 2.5125 -2.0216 2.0189 26 1 0.7923 -1.8743 1.5495 27 1 1.8614 -5.2447 2.1483 28 1 1.8673 -6.7625 0.0128 29 1 0.7589 -1.8942 -1.5118 30 1 2.4695 -2.0452 -2.0170 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259479429.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:09 Heat of formation + Delta-G solvation = 62.293696 kcal Electronic energy + Delta-G solvation = -13307.113167 eV Core-core repulsion = 11103.435935 eV Total energy + Delta-G solvation = -2203.677233 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.26585 -38.39868 -35.33612 -32.53684 -31.54379 -28.22596 -27.96649 -27.62390 -24.57281 -21.41164 -20.94476 -19.67774 -18.87002 -18.09540 -17.08684 -16.09054 -15.22625 -15.06054 -14.68913 -14.18939 -14.05886 -13.92499 -13.54678 -12.93350 -12.78498 -12.57655 -12.37023 -12.19251 -12.11358 -12.02305 -11.79618 -11.69090 -10.61297 -9.49175 -8.77827 -8.69709 -7.81370 -5.30934 1.42341 1.49043 1.51692 1.58402 2.11489 2.29948 2.53878 3.30923 3.59385 3.93808 4.13275 4.34995 4.40649 4.52708 4.74387 4.80516 4.85691 4.94679 5.01073 5.21629 5.27307 5.38306 5.44007 5.60652 5.67013 5.71258 6.12459 6.34221 6.36373 6.92995 7.15737 7.86935 8.33149 9.21872 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.075988 B = 0.007695 C = 0.007541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.391159 B = 3637.998054 C = 3712.126742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.602 5.602 3 C -0.271 4.271 4 H 0.074 0.926 5 C -0.052 4.052 6 N -0.938 5.938 7 Si 0.972 3.028 8 H -0.277 1.277 9 H -0.295 1.295 10 H -0.275 1.275 11 C 0.181 3.819 12 H 0.071 0.929 13 C -0.063 4.063 14 C -0.206 4.206 15 C -0.214 4.214 16 C 0.007 3.993 17 N -0.535 5.535 18 H 0.425 0.575 19 C -0.026 4.026 20 C -0.044 4.044 21 H 0.004 0.996 22 H 0.016 0.984 23 H 0.030 0.970 24 H 0.249 0.751 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.139 0.861 28 H 0.210 0.790 29 H 0.071 0.929 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.626 -13.860 -5.046 14.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.323 5.323 3 C -0.401 4.401 4 H 0.092 0.908 5 C -0.247 4.247 6 N -0.584 5.584 7 Si 0.800 3.200 8 H -0.203 1.203 9 H -0.221 1.221 10 H -0.200 1.200 11 C 0.072 3.928 12 H 0.090 0.910 13 C -0.104 4.104 14 C -0.213 4.213 15 C -0.238 4.238 16 C -0.123 4.123 17 N -0.131 5.131 18 H 0.264 0.736 19 C -0.140 4.140 20 C -0.084 4.084 21 H 0.022 0.978 22 H 0.035 0.965 23 H 0.049 0.951 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.157 0.843 28 H 0.227 0.773 29 H 0.090 0.910 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.522 -13.758 -5.135 14.901 hybrid contribution 0.024 1.016 -0.074 1.019 sum 2.546 -12.743 -5.210 14.000 Atomic orbital electron populations 1.20473 0.82957 0.95750 0.97596 1.44091 1.01920 1.00997 1.85243 1.19578 0.99173 0.86579 1.34787 0.90824 1.25833 0.98840 1.02039 0.97972 1.70249 1.22549 1.27891 1.37674 0.85276 0.77666 0.79205 0.77892 1.20300 1.22103 1.20022 1.21099 0.95315 0.84438 0.91939 0.91040 1.21002 0.99959 0.90466 0.98927 1.20611 1.10717 0.94700 0.95229 1.20656 1.12849 0.90861 0.99461 1.22270 1.08465 0.97495 0.84084 1.41356 1.58852 1.03411 1.09506 0.73620 1.21001 1.10322 0.87198 0.95479 1.21055 1.01950 0.86330 0.99077 0.97771 0.96540 0.95118 0.94207 0.93425 0.93395 0.84272 0.77331 0.91041 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.09 7.62 127.77 0.97 10.07 16 2 N -0.60 -31.14 2.95 -697.26 -2.05 -33.19 16 3 C -0.27 -15.19 9.59 84.03 0.81 -14.39 16 4 H 0.07 3.96 7.86 -2.91 -0.02 3.93 16 5 C -0.05 -2.93 5.06 84.86 0.43 -2.50 16 6 N -0.94 -56.68 10.86 21.65 0.24 -56.45 16 7 Si 0.97 45.47 29.58 68.60 2.03 47.50 16 8 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 9 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 11 C 0.18 7.82 3.61 45.98 0.17 7.99 16 12 H 0.07 3.10 7.94 -2.39 -0.02 3.08 16 13 C -0.06 -2.67 6.41 30.53 0.20 -2.48 16 14 C -0.21 -7.48 6.93 -19.79 -0.14 -7.62 16 15 C -0.21 -6.34 10.87 22.18 0.24 -6.10 16 16 C 0.01 0.16 11.93 83.21 0.99 1.16 16 17 N -0.54 -12.75 6.08 -182.09 -1.11 -13.86 16 18 H 0.43 6.87 8.96 -92.71 -0.83 6.04 16 19 C -0.03 -0.86 8.04 41.20 0.33 -0.53 16 20 C -0.04 -1.57 6.33 30.57 0.19 -1.38 16 21 H 0.00 0.23 7.28 -2.39 -0.02 0.21 16 22 H 0.02 0.88 7.43 -2.39 -0.02 0.86 16 23 H 0.03 1.37 6.27 -2.39 -0.01 1.36 16 24 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 25 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.05 2.22 7.07 -2.39 -0.02 2.20 16 27 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 28 H 0.21 2.59 8.06 -2.91 -0.02 2.56 16 29 H 0.07 2.66 6.16 -2.38 -0.01 2.65 16 30 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -67.27 246.88 3.60 -63.67 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 0.31 Total: 8.11 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: 4.19 Total: -15.78 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -2.93 Total: -103.49 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -67.27 3.60 -63.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259479429.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.959 kcal (2) G-P(sol) polarization free energy of solvation -67.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds