Wall clock time and date at job start Mon Mar 30 2020 02:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 111.00262 * 2 1 4 4 H 1.08997 * 109.46996 * 35.85805 * 3 2 1 5 5 C 1.52995 * 109.47048 * 155.86403 * 3 2 1 6 6 C 1.50704 * 109.47103 * 294.99781 * 5 3 2 7 7 H 1.08004 * 119.99842 * 359.97438 * 6 5 3 8 8 C 1.37879 * 120.00051 * 180.02562 * 6 5 3 9 9 N 1.31513 * 119.99895 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99946 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47242 * 90.00204 * 10 8 6 12 12 H 1.48503 * 109.47101 * 210.00184 * 10 8 6 13 13 H 1.48505 * 109.47122 * 330.00170 * 10 8 6 14 14 C 1.50700 * 109.46821 * 275.86175 * 3 2 1 15 15 C 1.38647 * 120.79198 * 313.13068 * 14 3 2 16 16 C 1.38207 * 119.16027 * 179.75366 * 15 14 3 17 17 N 1.31867 * 120.76659 * 0.53657 * 16 15 14 18 18 C 1.31872 * 121.72440 * 359.74031 * 17 16 15 19 19 C 1.38201 * 120.76277 * 359.97427 * 18 17 16 20 20 H 1.08994 * 109.47181 * 184.72189 * 1 2 3 21 21 H 1.09004 * 109.46819 * 304.72030 * 1 2 3 22 22 H 1.08993 * 109.47095 * 64.71433 * 1 2 3 23 23 H 1.00901 * 111.00132 * 236.04130 * 2 1 3 24 24 H 1.08998 * 109.47312 * 54.99937 * 5 3 2 25 25 H 1.09004 * 109.46987 * 175.00022 * 5 3 2 26 26 H 0.96995 * 120.00108 * 179.97438 * 9 8 6 27 27 H 1.08006 * 120.41830 * 0.02562 * 15 14 3 28 28 H 1.08002 * 119.61138 * 180.24843 * 16 15 14 29 29 H 1.07997 * 119.61806 * 180.02562 * 18 17 16 30 30 H 1.08006 * 120.41882 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3482 2.0091 0.6020 5 6 3.4072 1.3757 0.5898 6 6 3.3467 0.9719 2.0405 7 1 2.3964 0.7362 2.4963 8 6 4.5045 0.9044 2.7861 9 7 5.6616 1.1928 2.2315 10 14 4.4295 0.4045 4.5845 11 1 4.5673 -1.0699 4.6946 12 1 5.5345 1.0619 5.3275 13 1 3.1269 0.8244 5.1610 14 6 2.0401 1.8923 -1.4134 15 6 2.5672 1.1210 -2.4378 16 6 2.5867 1.6301 -3.7226 17 7 2.1213 2.8374 -3.9769 18 6 1.6179 3.6009 -3.0267 19 6 1.5602 3.1567 -1.7193 20 1 -0.3633 -1.0241 0.0846 21 1 -0.3633 0.5854 0.8447 22 1 -0.3633 0.4389 -0.9291 23 1 1.8306 -0.5262 -0.7813 24 1 4.0320 0.6703 0.0421 25 1 3.8319 2.3764 0.5086 26 1 6.4761 1.1457 2.7562 27 1 2.9538 0.1331 -2.2352 28 1 2.9919 1.0339 -4.5268 29 1 1.2458 4.5843 -3.2732 30 1 1.1464 3.7865 -0.9455 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259509339.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:04 Heat of formation + Delta-G solvation = 29.206326 kcal Electronic energy + Delta-G solvation = -13056.522941 eV Core-core repulsion = 10851.410933 eV Total energy + Delta-G solvation = -2205.112009 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.97851 -36.53544 -32.76261 -31.91226 -30.92694 -29.26358 -25.54535 -23.95266 -22.97184 -22.41219 -20.00610 -17.09229 -16.00152 -15.86478 -15.28713 -14.69167 -14.31023 -13.90653 -13.62708 -13.28868 -13.17062 -12.43957 -12.01022 -11.73278 -11.40417 -10.99148 -10.81512 -10.65299 -10.24607 -9.91814 -9.31349 -9.09926 -8.90698 -8.86467 -8.31269 -7.79962 -5.93230 -3.92163 1.39284 1.57106 3.37276 3.43077 3.46527 4.08460 4.52202 4.66715 4.83075 5.07020 5.11472 5.42608 5.42977 5.46272 5.67830 5.79396 5.88617 5.94244 6.11602 6.22049 6.31326 6.62481 6.73302 6.98369 7.40741 7.57416 7.85941 7.94940 8.06969 8.19080 8.49015 9.12498 9.69521 11.18611 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.041805 B = 0.008476 C = 0.007741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.614102 B = 3302.579205 C = 3616.463011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.662 5.662 3 C 0.126 3.874 4 H 0.079 0.921 5 C 0.041 3.959 6 C -0.493 4.493 7 H 0.060 0.940 8 C 0.051 3.949 9 N -0.902 5.902 10 Si 0.893 3.107 11 H -0.282 1.282 12 H -0.289 1.289 13 H -0.275 1.275 14 C -0.051 4.051 15 C -0.169 4.169 16 C 0.094 3.906 17 N -0.499 5.499 18 C 0.092 3.908 19 C -0.171 4.171 20 H 0.060 0.940 21 H 0.062 0.938 22 H 0.008 0.992 23 H 0.333 0.667 24 H 0.020 0.980 25 H 0.019 0.981 26 H 0.258 0.742 27 H 0.134 0.866 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.357 0.754 -7.896 11.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.291 5.291 3 C 0.016 3.984 4 H 0.097 0.903 5 C 0.004 3.996 6 C -0.531 4.531 7 H 0.078 0.922 8 C -0.149 4.149 9 N -0.542 5.542 10 Si 0.722 3.278 11 H -0.208 1.208 12 H -0.215 1.215 13 H -0.200 1.200 14 C -0.061 4.061 15 C -0.189 4.189 16 C -0.062 4.062 17 N -0.209 5.209 18 C -0.064 4.064 19 C -0.191 4.191 20 H 0.079 0.921 21 H 0.081 0.919 22 H 0.027 0.973 23 H 0.152 0.848 24 H 0.038 0.962 25 H 0.037 0.963 26 H 0.068 0.932 27 H 0.151 0.849 28 H 0.168 0.832 29 H 0.167 0.833 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.108 0.991 -8.002 11.435 hybrid contribution -0.076 -0.303 0.939 0.990 sum -8.184 0.689 -7.063 10.832 Atomic orbital electron populations 1.22216 0.89414 1.01224 0.99278 1.60576 1.05914 1.13529 1.49117 1.21108 1.01547 0.88066 0.87688 0.90319 1.19112 0.87323 0.97173 0.96024 1.21080 0.93209 1.44233 0.94592 0.92152 1.25009 0.95588 0.95928 0.98340 1.69965 0.97883 1.50016 1.36339 0.86576 0.77387 0.78580 0.85283 1.20808 1.21542 1.20034 1.21707 0.91907 0.93888 0.98552 1.21988 1.01267 1.01941 0.93737 1.22645 0.95903 0.92042 0.95645 1.67617 1.10693 1.05775 1.36796 1.22653 0.95785 0.98886 0.89119 1.22094 1.02178 0.96855 0.97988 0.92113 0.91911 0.97310 0.84813 0.96150 0.96271 0.93197 0.84860 0.83188 0.83280 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.53 60.07 0.63 1.07 16 2 N -0.66 -12.14 6.31 -115.25 -0.73 -12.86 16 3 C 0.13 2.48 2.19 -68.87 -0.15 2.33 16 4 H 0.08 1.56 7.60 -51.93 -0.39 1.17 16 5 C 0.04 1.03 4.57 -27.88 -0.13 0.90 16 6 C -0.49 -13.67 8.84 -34.44 -0.30 -13.97 16 7 H 0.06 1.66 7.74 -52.48 -0.41 1.26 16 8 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 9 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 10 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 C -0.05 -0.88 4.74 -104.32 -0.49 -1.37 16 15 C -0.17 -2.71 9.07 -39.44 -0.36 -3.07 16 16 C 0.09 1.41 11.18 -17.55 -0.20 1.21 16 17 N -0.50 -7.94 10.36 -13.25 -0.14 -8.07 16 18 C 0.09 1.35 11.18 -17.55 -0.20 1.16 16 19 C -0.17 -2.67 9.77 -39.44 -0.39 -3.05 16 20 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 21 H 0.06 0.95 7.94 -51.93 -0.41 0.54 16 22 H 0.01 0.12 8.05 -51.93 -0.42 -0.30 16 23 H 0.33 5.62 6.88 -39.29 -0.27 5.35 16 24 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.13 2.00 7.00 -52.48 -0.37 1.63 16 28 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.13 1.82 8.04 -52.48 -0.42 1.40 16 LS Contribution 260.46 15.07 3.93 3.93 Total: -1.00 -31.02 260.46 -6.84 -37.86 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -3.94 Total: 2.05 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -1.68 Total: -13.43 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.13 Total: -47.26 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.02 -6.84 -37.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259509339.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.064 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds