Wall clock time and date at job start Mon Mar 30 2020 02:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 111.00262 * 2 1 4 4 H 1.08997 * 109.46996 * 35.85805 * 3 2 1 5 5 C 1.52995 * 109.47048 * 155.86403 * 3 2 1 6 6 C 1.50704 * 109.47103 * 294.99781 * 5 3 2 7 7 H 1.08004 * 119.99842 * 359.97438 * 6 5 3 8 8 C 1.37879 * 120.00051 * 180.02562 * 6 5 3 9 9 N 1.31513 * 119.99895 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99946 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47242 * 90.00204 * 10 8 6 12 12 H 1.48503 * 109.47101 * 210.00184 * 10 8 6 13 13 H 1.48505 * 109.47122 * 330.00170 * 10 8 6 14 14 C 1.50700 * 109.46821 * 275.86175 * 3 2 1 15 15 C 1.38647 * 120.79198 * 313.13068 * 14 3 2 16 16 C 1.38207 * 119.16027 * 179.75366 * 15 14 3 17 17 N 1.31867 * 120.76659 * 0.53657 * 16 15 14 18 18 C 1.31872 * 121.72440 * 359.74031 * 17 16 15 19 19 C 1.38201 * 120.76277 * 359.97427 * 18 17 16 20 20 H 1.08994 * 109.47181 * 184.72189 * 1 2 3 21 21 H 1.09004 * 109.46819 * 304.72030 * 1 2 3 22 22 H 1.08993 * 109.47095 * 64.71433 * 1 2 3 23 23 H 1.00901 * 111.00132 * 236.04130 * 2 1 3 24 24 H 1.08998 * 109.47312 * 54.99937 * 5 3 2 25 25 H 1.09004 * 109.46987 * 175.00022 * 5 3 2 26 26 H 0.96995 * 120.00108 * 179.97438 * 9 8 6 27 27 H 1.08006 * 120.41830 * 0.02562 * 15 14 3 28 28 H 1.08002 * 119.61138 * 180.24843 * 16 15 14 29 29 H 1.07997 * 119.61806 * 180.02562 * 18 17 16 30 30 H 1.08006 * 120.41882 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3482 2.0091 0.6020 5 6 3.4072 1.3757 0.5898 6 6 3.3467 0.9719 2.0405 7 1 2.3964 0.7362 2.4963 8 6 4.5045 0.9044 2.7861 9 7 5.6616 1.1928 2.2315 10 14 4.4295 0.4045 4.5845 11 1 4.5673 -1.0699 4.6946 12 1 5.5345 1.0619 5.3275 13 1 3.1269 0.8244 5.1610 14 6 2.0401 1.8923 -1.4134 15 6 2.5672 1.1210 -2.4378 16 6 2.5867 1.6301 -3.7226 17 7 2.1213 2.8374 -3.9769 18 6 1.6179 3.6009 -3.0267 19 6 1.5602 3.1567 -1.7193 20 1 -0.3633 -1.0241 0.0846 21 1 -0.3633 0.5854 0.8447 22 1 -0.3633 0.4389 -0.9291 23 1 1.8306 -0.5262 -0.7813 24 1 4.0320 0.6703 0.0421 25 1 3.8319 2.3764 0.5086 26 1 6.4761 1.1457 2.7562 27 1 2.9538 0.1331 -2.2352 28 1 2.9919 1.0339 -4.5268 29 1 1.2458 4.5843 -3.2732 30 1 1.1464 3.7865 -0.9455 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259509339.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:03 Heat of formation + Delta-G solvation = 8.123916 kcal Electronic energy + Delta-G solvation = -13057.437143 eV Core-core repulsion = 10851.410933 eV Total energy + Delta-G solvation = -2206.026211 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.22063 -38.00066 -34.84567 -33.21625 -32.10920 -31.07897 -27.28516 -25.28805 -24.32874 -24.02031 -21.54964 -18.75055 -17.67190 -17.22908 -16.59233 -16.47412 -15.75325 -15.38716 -14.96073 -14.53631 -14.44587 -14.29516 -13.67134 -13.25747 -12.89864 -12.62874 -12.58164 -12.46619 -11.99933 -11.73709 -11.19631 -10.52680 -10.51267 -10.34629 -10.07493 -9.20618 -8.11775 -6.17837 0.21442 0.29733 1.43104 1.44334 1.54774 2.46738 2.88186 3.20796 3.46825 3.58712 3.74698 3.90320 4.21840 4.25833 4.39620 4.60386 4.62889 4.71487 4.89308 4.96145 5.03071 5.05991 5.37107 5.43407 5.58550 5.78873 5.85924 6.22010 6.38108 6.59404 6.95316 7.00902 7.48303 9.00247 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.041805 B = 0.008476 C = 0.007741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.614102 B = 3302.579205 C = 3616.463011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.681 5.681 3 C 0.142 3.858 4 H 0.074 0.926 5 C 0.050 3.950 6 C -0.503 4.503 7 H 0.060 0.940 8 C -0.006 4.006 9 N -0.939 5.939 10 Si 0.961 3.039 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.265 1.265 14 C -0.070 4.070 15 C -0.178 4.178 16 C 0.095 3.905 17 N -0.512 5.512 18 C 0.094 3.906 19 C -0.177 4.177 20 H 0.079 0.921 21 H 0.059 0.941 22 H 0.019 0.981 23 H 0.340 0.660 24 H -0.006 1.006 25 H -0.011 1.011 26 H 0.259 0.741 27 H 0.137 0.863 28 H 0.180 0.820 29 H 0.183 0.817 30 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.588 0.686 -8.118 12.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.312 5.312 3 C 0.032 3.968 4 H 0.093 0.907 5 C 0.012 3.988 6 C -0.541 4.541 7 H 0.079 0.921 8 C -0.202 4.202 9 N -0.581 5.581 10 Si 0.787 3.213 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.189 1.189 14 C -0.080 4.080 15 C -0.198 4.198 16 C -0.061 4.061 17 N -0.222 5.222 18 C -0.062 4.062 19 C -0.197 4.197 20 H 0.097 0.903 21 H 0.078 0.922 22 H 0.038 0.962 23 H 0.159 0.841 24 H 0.013 0.987 25 H 0.007 0.993 26 H 0.068 0.932 27 H 0.155 0.845 28 H 0.197 0.803 29 H 0.200 0.800 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.362 0.919 -8.232 12.500 hybrid contribution 0.297 -0.270 0.949 1.031 sum -9.066 0.649 -7.282 11.646 Atomic orbital electron populations 1.22219 0.87184 1.02498 0.99682 1.60463 1.08075 1.12754 1.49881 1.20601 0.97988 0.89194 0.89062 0.90742 1.18898 0.90377 0.94388 0.95136 1.21437 0.93138 1.43568 0.95974 0.92145 1.25892 0.95274 0.96047 1.02974 1.70099 0.98571 1.51336 1.38096 0.85507 0.77742 0.78260 0.79832 1.20248 1.21237 1.18914 1.21542 0.93875 0.95138 0.97471 1.22109 1.01372 1.02191 0.94112 1.23090 0.95094 0.92047 0.95903 1.67714 1.11013 1.06190 1.37261 1.23167 0.94713 0.99937 0.88390 1.22307 1.02061 0.96264 0.99073 0.90259 0.92209 0.96207 0.84124 0.98723 0.99316 0.93187 0.84531 0.80294 0.80005 0.83681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 10.53 127.69 1.34 2.30 16 2 N -0.68 -24.60 6.31 -518.54 -3.27 -27.88 16 3 C 0.14 5.61 2.19 44.17 0.10 5.71 16 4 H 0.07 2.96 7.60 -2.39 -0.02 2.94 16 5 C 0.05 2.56 4.57 29.85 0.14 2.70 16 6 C -0.50 -28.25 8.84 25.60 0.23 -28.02 16 7 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 8 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 9 N -0.94 -57.47 13.29 21.45 0.28 -57.18 16 10 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 13 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 14 C -0.07 -2.41 4.74 -19.67 -0.09 -2.50 16 15 C -0.18 -5.56 9.07 22.36 0.20 -5.36 16 16 C 0.09 2.66 11.18 84.68 0.95 3.61 16 17 N -0.51 -15.17 10.36 -195.84 -2.03 -17.20 16 18 C 0.09 2.56 11.18 84.68 0.95 3.50 16 19 C -0.18 -5.29 9.77 22.36 0.22 -5.07 16 20 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 21 H 0.06 1.73 7.94 -2.39 -0.02 1.71 16 22 H 0.02 0.52 8.05 -2.39 -0.02 0.50 16 23 H 0.34 11.31 6.88 -89.69 -0.62 10.69 16 24 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 25 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 26 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 27 H 0.14 4.07 7.00 -2.91 -0.02 4.05 16 28 H 0.18 3.82 8.06 -2.91 -0.02 3.79 16 29 H 0.18 3.59 8.06 -2.91 -0.02 3.57 16 30 H 0.15 3.82 8.04 -2.91 -0.02 3.80 16 Total: -1.00 -66.24 260.46 2.00 -64.24 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.51 Total: 14.01 kcal Atomic # 6 Polarization: -27.48 SS G_CDS: 4.49 Total: -22.99 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -5.02 Total: -102.26 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -66.24 2.00 -64.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259509339.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.359 kcal (2) G-P(sol) polarization free energy of solvation -66.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds