Wall clock time and date at job start Mon Mar 30 2020 02:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47223 * 2 1 4 4 C 1.52995 * 109.47547 * 120.00149 * 2 1 3 5 5 C 1.50707 * 109.47116 * 240.00317 * 2 1 3 6 6 C 1.38323 * 120.37418 * 74.72265 * 5 2 1 7 7 C 1.40898 * 118.15605 * 179.76509 * 6 5 2 8 8 C 1.41551 * 120.66562 * 180.23513 * 7 6 5 9 9 H 1.08003 * 119.99684 * 354.07746 * 8 7 6 10 10 C 1.40111 * 120.00334 * 174.07500 * 8 7 6 11 11 N 1.30667 * 119.99890 * 6.23756 * 10 8 7 12 12 Si 1.86795 * 120.00021 * 186.23410 * 10 8 7 13 13 H 1.48505 * 109.47436 * 94.98723 * 12 10 8 14 14 H 1.48502 * 109.47230 * 214.98480 * 12 10 8 15 15 H 1.48499 * 109.47502 * 334.98339 * 12 10 8 16 16 N 1.34064 * 118.67722 * 0.50577 * 7 6 5 17 17 C 1.31380 * 120.57773 * 359.72835 * 16 7 6 18 18 N 1.32049 * 122.04441 * 0.02671 * 17 16 7 19 19 H 1.08999 * 109.47316 * 60.00141 * 1 2 3 20 20 H 1.08994 * 109.47031 * 299.99705 * 1 2 3 21 21 H 1.09007 * 109.46618 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46966 * 60.00030 * 3 2 1 23 23 H 1.08998 * 109.47911 * 180.02562 * 3 2 1 24 24 H 1.09010 * 109.47125 * 300.00609 * 3 2 1 25 25 H 1.08999 * 109.46886 * 59.99777 * 4 2 1 26 26 H 1.09005 * 109.47412 * 180.02562 * 4 2 1 27 27 H 1.09003 * 109.46890 * 300.00122 * 4 2 1 28 28 H 1.08005 * 120.92120 * 359.97438 * 6 5 2 29 29 H 0.97006 * 119.99982 * 180.02562 * 11 10 8 30 30 H 1.08002 * 118.97528 * 179.97438 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 2.0323 -0.7104 -1.2306 6 6 1.9690 -0.0955 -2.4680 7 6 2.4565 -0.8003 -3.5864 8 6 2.4222 -0.2196 -4.8768 9 1 1.9337 0.7318 -5.0280 10 6 3.0218 -0.8788 -5.9580 11 7 3.5050 -2.0829 -5.8024 12 14 3.1303 -0.0366 -7.6218 13 1 4.4504 0.6305 -7.7538 14 1 2.9764 -1.0471 -8.6991 15 1 2.0502 0.9762 -7.7353 16 7 2.9485 -2.0341 -3.4049 17 6 2.9797 -2.5716 -2.2064 18 7 2.5344 -1.9325 -1.1402 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0278 0.0005 22 1 1.6767 1.9563 0.8900 23 1 3.1300 1.4426 -0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6767 -1.7489 1.2491 26 1 3.1301 -0.7208 1.2494 27 1 1.6767 -0.2074 2.1392 28 1 1.5604 0.8987 -2.5734 29 1 3.9205 -2.5392 -6.5509 30 1 3.3812 -3.5674 -2.0899 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259608887.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:48 Heat of formation + Delta-G solvation = 3.396081 kcal Electronic energy + Delta-G solvation = -13263.856681 eV Core-core repulsion = 11057.625456 eV Total energy + Delta-G solvation = -2206.231225 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.02823 -37.73339 -35.73537 -32.99254 -31.78434 -28.64750 -28.07927 -27.68969 -24.51663 -23.74267 -20.81438 -19.08555 -17.53446 -16.83036 -16.34503 -15.75104 -15.33146 -14.93572 -14.59894 -14.37911 -14.33184 -13.15792 -13.12303 -12.96247 -12.82949 -12.68128 -12.51108 -12.01863 -11.88537 -11.80165 -11.74384 -11.48341 -10.76462 -10.41898 -9.89898 -9.34545 -8.37220 -6.75798 0.79922 1.03664 1.38905 1.54302 1.55338 2.18507 2.82420 3.56860 3.82405 3.93366 4.11604 4.23203 4.38416 4.61168 4.79007 4.83404 4.88213 4.95409 5.03967 5.06335 5.09229 5.12825 5.25955 5.34993 5.39053 5.49656 5.62088 6.01180 6.07126 6.57903 6.79826 7.17267 8.20617 8.35535 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.051556 B = 0.009072 C = 0.008149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.964576 B = 3085.752871 C = 3435.354591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.021 4.021 3 C -0.129 4.129 4 C -0.111 4.111 5 C 0.168 3.832 6 C -0.332 4.332 7 C 0.234 3.766 8 C -0.455 4.455 9 H 0.095 0.905 10 C 0.023 3.977 11 N -0.749 5.749 12 Si 0.993 3.007 13 H -0.263 1.263 14 H -0.266 1.266 15 H -0.251 1.251 16 N -0.554 5.554 17 C 0.268 3.732 18 N -0.621 5.621 19 H 0.048 0.952 20 H 0.089 0.911 21 H 0.040 0.960 22 H 0.088 0.912 23 H 0.040 0.960 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.037 0.963 27 H 0.076 0.924 28 H 0.117 0.883 29 H 0.284 0.716 30 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.950 5.322 5.245 8.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.022 4.022 3 C -0.186 4.186 4 C -0.169 4.169 5 C 0.029 3.971 6 C -0.358 4.358 7 C 0.106 3.894 8 C -0.489 4.489 9 H 0.113 0.887 10 C -0.200 4.200 11 N -0.371 5.371 12 Si 0.813 3.187 13 H -0.187 1.187 14 H -0.190 1.190 15 H -0.175 1.175 16 N -0.274 5.274 17 C -0.023 4.023 18 N -0.345 5.345 19 H 0.068 0.932 20 H 0.108 0.892 21 H 0.059 0.941 22 H 0.107 0.893 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.095 0.905 28 H 0.135 0.865 29 H 0.094 0.906 30 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -2.492 4.243 5.243 7.191 hybrid contribution -0.011 0.632 -1.009 1.191 sum -2.502 4.875 4.234 6.925 Atomic orbital electron populations 1.21759 0.92493 1.01345 1.02677 1.19574 0.96390 0.95084 0.91164 1.21823 1.00262 0.93744 1.02801 1.21524 0.99957 0.99943 0.95464 1.21476 0.91115 0.90284 0.94263 1.22320 1.15782 1.03056 0.94610 1.19306 0.87570 0.88331 0.94238 1.20073 1.31352 1.05764 0.91696 0.88705 1.27137 0.92934 0.94979 1.04977 1.70175 1.22204 1.11344 1.33375 0.85032 0.79965 0.78841 0.74902 1.18723 1.18999 1.17466 1.69303 1.22041 1.12682 1.23417 1.24872 0.92996 0.99422 0.84994 1.68050 1.21644 1.10872 1.33889 0.93242 0.89176 0.94110 0.89327 0.94097 0.92778 0.93372 0.94420 0.90478 0.86458 0.90568 0.80794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 8.41 71.98 0.61 -3.11 16 2 C -0.02 -0.72 0.88 -52.93 -0.05 -0.77 16 3 C -0.13 -3.79 8.10 71.98 0.58 -3.21 16 4 C -0.11 -3.47 7.83 71.98 0.56 -2.90 16 5 C 0.17 7.71 5.57 42.49 0.24 7.95 16 6 C -0.33 -16.58 8.97 22.94 0.21 -16.37 16 7 C 0.23 13.27 6.57 40.27 0.26 13.54 16 8 C -0.46 -24.74 9.19 23.54 0.22 -24.53 16 9 H 0.09 4.76 7.86 -2.91 -0.02 4.74 16 10 C 0.02 1.17 5.49 85.32 0.47 1.64 16 11 N -0.75 -40.44 11.55 21.85 0.25 -40.19 16 12 Si 0.99 37.39 29.56 68.60 2.03 39.42 16 13 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 14 H -0.27 -9.51 7.11 99.48 0.71 -8.81 16 15 H -0.25 -9.00 7.11 99.48 0.71 -8.30 16 16 N -0.55 -31.98 8.08 -193.52 -1.56 -33.54 16 17 C 0.27 13.92 12.27 180.93 2.22 16.14 16 18 N -0.62 -30.36 9.17 -188.33 -1.73 -32.09 16 19 H 0.05 1.52 8.11 -2.39 -0.02 1.50 16 20 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 21 H 0.04 1.29 8.14 -2.38 -0.02 1.28 16 22 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.05 1.63 6.80 -2.38 -0.02 1.62 16 25 H 0.05 1.62 7.88 -2.39 -0.02 1.60 16 26 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.12 5.37 6.85 -2.91 -0.02 5.35 16 29 H 0.28 13.69 8.29 -92.70 -0.77 12.92 16 30 H 0.18 7.96 8.06 -2.91 -0.02 7.93 16 Total: -1.00 -64.26 255.68 5.42 -58.84 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 1.11 Total: 19.20 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 5.32 Total: -11.63 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -3.04 Total: -105.82 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.42 kcal Total: -64.26 5.42 -58.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259608887.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.233 kcal (2) G-P(sol) polarization free energy of solvation -64.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds