Wall clock time and date at job start Mon Mar 30 2020 02:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46923 * 110.99823 * 2 1 4 4 C 1.53477 * 109.69137 * 163.84114 * 3 2 1 5 5 C 1.51110 * 107.83226 * 49.52030 * 4 3 2 6 6 N 1.35492 * 128.14784 * 163.92762 * 5 4 3 7 7 H 0.97004 * 125.76832 * 0.18790 * 6 5 4 8 8 C 1.38251 * 108.46062 * 180.21737 * 6 5 4 9 9 C 1.39953 * 126.31553 * 179.88985 * 8 6 5 10 10 H 1.08002 * 119.99947 * 359.97438 * 9 8 6 11 11 C 1.40063 * 120.00046 * 179.97438 * 9 8 6 12 12 N 1.30864 * 119.99754 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00044 * 179.97438 * 11 9 8 14 14 H 1.48510 * 109.47033 * 90.00114 * 13 11 9 15 15 H 1.48500 * 109.47406 * 209.99995 * 13 11 9 16 16 H 1.48503 * 109.47269 * 330.00221 * 13 11 9 17 17 C 1.39977 * 107.36813 * 359.90352 * 8 6 5 18 18 C 1.36737 * 122.84360 * 344.00204 * 5 4 3 19 19 C 1.47281 * 110.99793 * 235.45787 * 2 1 3 20 20 H 1.08992 * 109.47459 * 180.58690 * 1 2 3 21 21 H 1.09004 * 109.47040 * 300.58841 * 1 2 3 22 22 H 1.09000 * 109.47033 * 60.58793 * 1 2 3 23 23 H 1.09005 * 109.43486 * 283.90830 * 3 2 1 24 24 H 1.08997 * 109.44064 * 43.77108 * 3 2 1 25 25 H 1.09005 * 109.79483 * 289.93571 * 4 3 2 26 26 H 1.08995 * 109.83330 * 169.13064 * 4 3 2 27 27 H 0.97002 * 119.99977 * 180.02562 * 12 11 9 28 28 H 1.07998 * 126.52166 * 179.97438 * 17 8 6 29 29 H 1.09003 * 109.70977 * 295.36798 * 19 2 1 30 30 H 1.09003 * 109.71116 * 55.94964 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3717 0.0000 4 6 3.4766 1.3571 0.4022 5 6 4.1746 0.3145 -0.4400 6 7 5.5046 0.1582 -0.6460 7 1 6.2059 0.7105 -0.2664 8 6 5.6932 -0.9210 -1.4892 9 6 6.9218 -1.4100 -1.9476 10 1 7.8410 -0.9324 -1.6420 11 6 6.9593 -2.5187 -2.8026 12 7 5.8455 -3.0977 -3.1725 13 14 8.5991 -3.1708 -3.4150 14 1 9.1086 -4.1959 -2.4689 15 1 8.4192 -3.7814 -4.7567 16 1 9.5732 -2.0537 -3.5062 17 6 4.4286 -1.4343 -1.8001 18 6 3.4998 -0.6505 -1.1352 19 6 1.9968 -0.7796 -1.1326 20 1 -0.3634 -1.0275 0.0105 21 1 -0.3633 0.5230 0.8847 22 1 -0.3633 0.5047 -0.8952 23 1 1.8948 1.7988 -0.9978 24 1 1.4326 1.9763 0.7110 25 1 3.5700 1.1018 1.4578 26 1 3.9192 2.3362 0.2189 27 1 5.8715 -3.8657 -3.7644 28 1 4.2172 -2.2802 -2.4375 29 1 1.7181 -1.8273 -1.0193 30 1 1.5921 -0.3907 -2.0670 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259640569.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:23 Heat of formation + Delta-G solvation = 38.633486 kcal Electronic energy + Delta-G solvation = -13272.336464 eV Core-core repulsion = 11067.633247 eV Total energy + Delta-G solvation = -2204.703216 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.46035 -36.78393 -33.38516 -31.15149 -30.25497 -27.78448 -26.10629 -24.71466 -22.15465 -21.03360 -19.17122 -17.50001 -16.88197 -15.60212 -14.89445 -14.43421 -14.19024 -13.77307 -13.02650 -12.52485 -12.34859 -11.96859 -11.76540 -11.54489 -11.26896 -11.14570 -11.05175 -10.79257 -10.63062 -10.27095 -9.60011 -9.48484 -9.16165 -7.85401 -6.91199 -6.56263 -6.38552 -3.99729 3.05854 3.16478 3.19758 3.82123 4.05548 4.42870 4.61649 4.94447 5.43950 5.57155 5.59354 5.66786 5.88054 5.99216 6.08050 6.18841 6.28215 6.38560 6.50664 6.66322 6.72650 7.27261 7.39362 7.55345 7.68911 7.96212 8.05734 8.36331 8.51695 9.00765 9.15931 9.34994 9.57976 10.50839 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.066349 B = 0.008323 C = 0.007490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.911103 B = 3363.327727 C = 3737.200228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.543 5.543 3 C 0.071 3.929 4 C -0.021 4.021 5 C -0.099 4.099 6 N -0.587 5.587 7 H 0.388 0.612 8 C 0.207 3.793 9 C -0.455 4.455 10 H 0.066 0.934 11 C 0.071 3.929 12 N -0.804 5.804 13 Si 0.919 3.081 14 H -0.273 1.273 15 H -0.279 1.279 16 H -0.267 1.267 17 C -0.272 4.272 18 C -0.150 4.150 19 C 0.138 3.862 20 H 0.064 0.936 21 H 0.061 0.939 22 H 0.018 0.982 23 H 0.031 0.969 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.272 0.728 28 H 0.153 0.847 29 H 0.070 0.930 30 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.981 4.668 3.040 7.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.268 5.268 3 C -0.058 4.058 4 C -0.060 4.060 5 C -0.207 4.207 6 N -0.187 5.187 7 H 0.221 0.779 8 C 0.097 3.903 9 C -0.491 4.491 10 H 0.084 0.916 11 C -0.144 4.144 12 N -0.433 5.433 13 Si 0.744 3.256 14 H -0.198 1.198 15 H -0.204 1.204 16 H -0.192 1.192 17 C -0.295 4.295 18 C -0.158 4.158 19 C 0.011 3.989 20 H 0.083 0.917 21 H 0.079 0.921 22 H 0.037 0.963 23 H 0.049 0.951 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.170 0.830 29 H 0.089 0.911 30 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.879 4.342 3.386 7.357 hybrid contribution 0.811 0.315 -0.837 1.207 sum -4.068 4.657 2.550 6.689 Atomic orbital electron populations 1.22327 0.88547 1.01626 0.99684 1.61944 1.06130 1.13523 1.45159 1.21933 0.95544 0.89179 0.99145 1.19860 0.92935 0.95449 0.97742 1.19314 0.83550 1.05369 1.12478 1.41616 1.05262 1.28610 1.43172 0.77868 1.18172 0.95045 0.86170 0.90946 1.18377 0.91533 1.12427 1.26740 0.91579 1.25567 0.97786 0.95824 0.95195 1.69777 1.27121 1.18273 1.28081 0.86155 0.81838 0.79274 0.78303 1.19816 1.20404 1.19163 1.21356 0.89456 1.06716 1.12005 1.18974 0.92140 0.99979 1.04736 1.20436 0.92789 0.96679 0.89014 0.91679 0.92065 0.96340 0.95117 0.91778 0.92566 0.93112 0.91668 0.82992 0.91146 0.95726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.54 60.07 0.57 0.95 16 2 N -0.54 -9.99 4.87 -243.61 -1.19 -11.17 16 3 C 0.07 1.21 5.52 -3.56 -0.02 1.19 16 4 C -0.02 -0.40 6.52 -27.43 -0.18 -0.58 16 5 C -0.10 -2.35 7.14 -81.32 -0.58 -2.93 16 6 N -0.59 -14.32 6.14 -6.41 -0.04 -14.36 16 7 H 0.39 8.20 8.96 -40.82 -0.37 7.84 16 8 C 0.21 5.78 6.90 -83.68 -0.58 5.20 16 9 C -0.46 -12.53 9.45 -38.26 -0.36 -12.89 16 10 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 11 C 0.07 1.88 5.50 -17.28 -0.09 1.78 16 12 N -0.80 -21.85 10.26 55.56 0.57 -21.28 16 13 Si 0.92 19.62 29.56 -169.99 -5.03 14.59 16 14 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 15 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 16 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 17 C -0.27 -7.69 9.76 -38.82 -0.38 -8.07 16 18 C -0.15 -3.78 5.99 -104.98 -0.63 -4.41 16 19 C 0.14 2.91 5.84 -4.69 -0.03 2.88 16 20 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 21 H 0.06 0.75 8.07 -51.93 -0.42 0.33 16 22 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 23 H 0.03 0.54 8.07 -51.93 -0.42 0.12 16 24 H 0.06 0.91 7.94 -51.93 -0.41 0.50 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.27 6.76 8.30 -40.82 -0.34 6.42 16 28 H 0.15 4.50 5.71 -52.49 -0.30 4.20 16 29 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 248.04 15.07 3.74 3.74 Total: -1.00 -30.00 248.04 -8.22 -38.21 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -4.00 Total: 7.14 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -2.27 Total: -16.87 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: -0.66 Total: -46.81 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.00 -8.22 -38.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259640569.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.848 kcal (2) G-P(sol) polarization free energy of solvation -29.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds