Wall clock time and date at job start Mon Mar 30 2020 02:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46923 * 110.99823 * 2 1 4 4 C 1.53477 * 109.69137 * 163.84114 * 3 2 1 5 5 C 1.51110 * 107.83226 * 49.52030 * 4 3 2 6 6 N 1.35492 * 128.14784 * 163.92762 * 5 4 3 7 7 H 0.97004 * 125.76832 * 0.18790 * 6 5 4 8 8 C 1.38251 * 108.46062 * 180.21737 * 6 5 4 9 9 C 1.39953 * 126.31553 * 179.88985 * 8 6 5 10 10 H 1.08002 * 119.99947 * 359.97438 * 9 8 6 11 11 C 1.40063 * 120.00046 * 179.97438 * 9 8 6 12 12 N 1.30864 * 119.99754 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00044 * 179.97438 * 11 9 8 14 14 H 1.48510 * 109.47033 * 90.00114 * 13 11 9 15 15 H 1.48500 * 109.47406 * 209.99995 * 13 11 9 16 16 H 1.48503 * 109.47269 * 330.00221 * 13 11 9 17 17 C 1.39977 * 107.36813 * 359.90352 * 8 6 5 18 18 C 1.36737 * 122.84360 * 344.00204 * 5 4 3 19 19 C 1.47281 * 110.99793 * 235.45787 * 2 1 3 20 20 H 1.08992 * 109.47459 * 180.58690 * 1 2 3 21 21 H 1.09004 * 109.47040 * 300.58841 * 1 2 3 22 22 H 1.09000 * 109.47033 * 60.58793 * 1 2 3 23 23 H 1.09005 * 109.43486 * 283.90830 * 3 2 1 24 24 H 1.08997 * 109.44064 * 43.77108 * 3 2 1 25 25 H 1.09005 * 109.79483 * 289.93571 * 4 3 2 26 26 H 1.08995 * 109.83330 * 169.13064 * 4 3 2 27 27 H 0.97002 * 119.99977 * 180.02562 * 12 11 9 28 28 H 1.07998 * 126.52166 * 179.97438 * 17 8 6 29 29 H 1.09003 * 109.70977 * 295.36798 * 19 2 1 30 30 H 1.09003 * 109.71116 * 55.94964 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3717 0.0000 4 6 3.4766 1.3571 0.4022 5 6 4.1746 0.3145 -0.4400 6 7 5.5046 0.1582 -0.6460 7 1 6.2059 0.7105 -0.2664 8 6 5.6932 -0.9210 -1.4892 9 6 6.9218 -1.4100 -1.9476 10 1 7.8410 -0.9324 -1.6420 11 6 6.9593 -2.5187 -2.8026 12 7 5.8455 -3.0977 -3.1725 13 14 8.5991 -3.1708 -3.4150 14 1 9.1086 -4.1959 -2.4689 15 1 8.4192 -3.7814 -4.7567 16 1 9.5732 -2.0537 -3.5062 17 6 4.4286 -1.4343 -1.8001 18 6 3.4998 -0.6505 -1.1352 19 6 1.9968 -0.7796 -1.1326 20 1 -0.3634 -1.0275 0.0105 21 1 -0.3633 0.5230 0.8847 22 1 -0.3633 0.5047 -0.8952 23 1 1.8948 1.7988 -0.9978 24 1 1.4326 1.9763 0.7110 25 1 3.5700 1.1018 1.4578 26 1 3.9192 2.3362 0.2189 27 1 5.8715 -3.8657 -3.7644 28 1 4.2172 -2.2802 -2.4375 29 1 1.7181 -1.8273 -1.0193 30 1 1.5921 -0.3907 -2.0670 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259640569.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:22 Heat of formation + Delta-G solvation = 18.086808 kcal Electronic energy + Delta-G solvation = -13273.227434 eV Core-core repulsion = 11067.633247 eV Total energy + Delta-G solvation = -2205.594187 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.31490 -38.31217 -35.35282 -32.70430 -32.03232 -29.72605 -27.77098 -26.27021 -23.86184 -22.56386 -21.16424 -19.38914 -18.72915 -17.47047 -16.49948 -15.92056 -15.70140 -15.35464 -14.59070 -14.24912 -13.99982 -13.75438 -13.36381 -13.20058 -12.91835 -12.77563 -12.65045 -12.43387 -12.15029 -11.88585 -11.45472 -11.34237 -11.08979 -9.28568 -8.84437 -8.58347 -8.35255 -6.05768 1.35024 1.41047 1.55434 1.94406 2.25833 2.57643 3.08751 3.14209 3.49952 4.10856 4.29621 4.39720 4.56572 4.60887 4.69904 4.82351 4.87760 4.95095 4.98889 5.04584 5.21581 5.25683 5.52885 5.92510 6.01246 6.11598 6.30179 6.31167 6.57205 6.94844 7.13768 7.33502 7.65614 8.56160 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.066349 B = 0.008323 C = 0.007490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.911103 B = 3363.327727 C = 3737.200228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.556 5.556 3 C 0.070 3.930 4 C -0.022 4.022 5 C -0.086 4.086 6 N -0.584 5.584 7 H 0.403 0.597 8 C 0.173 3.827 9 C -0.488 4.488 10 H 0.072 0.928 11 C 0.022 3.978 12 N -0.838 5.838 13 Si 0.998 3.002 14 H -0.266 1.266 15 H -0.270 1.270 16 H -0.259 1.259 17 C -0.311 4.311 18 C -0.182 4.182 19 C 0.146 3.854 20 H 0.068 0.932 21 H 0.088 0.912 22 H 0.027 0.973 23 H 0.025 0.975 24 H 0.105 0.895 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.278 0.722 28 H 0.129 0.871 29 H 0.064 0.936 30 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.217 5.921 3.995 8.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.281 5.281 3 C -0.058 4.058 4 C -0.060 4.060 5 C -0.194 4.194 6 N -0.185 5.185 7 H 0.238 0.762 8 C 0.062 3.938 9 C -0.524 4.524 10 H 0.091 0.909 11 C -0.190 4.190 12 N -0.467 5.467 13 Si 0.819 3.181 14 H -0.191 1.191 15 H -0.195 1.195 16 H -0.183 1.183 17 C -0.335 4.335 18 C -0.190 4.190 19 C 0.018 3.982 20 H 0.087 0.913 21 H 0.106 0.894 22 H 0.045 0.955 23 H 0.043 0.957 24 H 0.123 0.877 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.146 0.854 29 H 0.082 0.918 30 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.127 5.619 4.361 8.768 hybrid contribution 0.799 -0.017 -1.072 1.337 sum -4.328 5.603 3.289 7.806 Atomic orbital electron populations 1.22428 0.85779 1.02576 1.01339 1.61911 1.08680 1.14055 1.43438 1.22034 0.94799 0.88967 1.00027 1.20075 0.93733 0.94934 0.97247 1.20223 0.83125 1.05234 1.10841 1.41660 1.06292 1.28010 1.42552 0.76205 1.18464 0.95302 0.87653 0.92381 1.18755 0.91753 1.13731 1.28119 0.90928 1.26629 1.01938 0.95581 0.94840 1.69917 1.29510 1.18729 1.28500 0.84964 0.76595 0.78641 0.77860 1.19051 1.19509 1.18316 1.21358 0.91168 1.07466 1.13497 1.19411 0.94287 1.00217 1.05098 1.20261 0.90462 0.97100 0.90355 0.91306 0.89369 0.95477 0.95680 0.87694 0.91357 0.90494 0.91129 0.85401 0.91812 0.95770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.54 127.69 1.22 1.88 16 2 N -0.56 -19.13 4.87 -924.63 -4.50 -23.63 16 3 C 0.07 2.15 5.52 86.46 0.48 2.62 16 4 C -0.02 -0.74 6.52 30.14 0.20 -0.54 16 5 C -0.09 -3.99 7.14 41.77 0.30 -3.69 16 6 N -0.58 -28.64 6.14 -174.18 -1.07 -29.71 16 7 H 0.40 16.84 8.96 -92.71 -0.83 16.01 16 8 C 0.17 9.96 6.90 38.97 0.27 10.23 16 9 C -0.49 -27.64 9.45 23.13 0.22 -27.42 16 10 H 0.07 3.83 7.85 -2.91 -0.02 3.81 16 11 C 0.02 1.17 5.50 85.28 0.47 1.64 16 12 N -0.84 -47.31 10.26 21.85 0.22 -47.08 16 13 Si 1.00 40.59 29.56 68.60 2.03 42.62 16 14 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 15 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 16 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 17 C -0.31 -18.41 9.76 22.76 0.22 -18.18 16 18 C -0.18 -9.34 5.99 -20.10 -0.12 -9.46 16 19 C 0.15 6.16 5.84 85.53 0.50 6.66 16 20 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 21 H 0.09 1.77 8.07 -2.38 -0.02 1.75 16 22 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 23 H 0.02 0.80 8.07 -2.38 -0.02 0.78 16 24 H 0.10 2.41 7.94 -2.39 -0.02 2.39 16 25 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 26 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.28 14.27 8.30 -92.71 -0.77 13.50 16 28 H 0.13 8.08 5.71 -2.91 -0.02 8.06 16 29 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -66.99 248.04 0.74 -66.25 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.31 Total: 27.82 kcal Atomic # 6 Polarization: -40.02 SS G_CDS: 3.75 Total: -36.27 kcal Atomic # 7 Polarization: -95.07 SS G_CDS: -5.35 Total: -100.42 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -66.99 0.74 -66.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259640569.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.339 kcal (2) G-P(sol) polarization free energy of solvation -66.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds