Wall clock time and date at job start Mon Mar 30 2020 02:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46898 * 111.00286 * 2 1 4 4 C 1.46900 * 111.00206 * 123.95880 * 2 1 3 5 5 H 1.08998 * 109.47191 * 150.59208 * 4 2 1 6 6 C 1.50705 * 109.47174 * 30.59491 * 4 2 1 7 7 H 1.08003 * 119.99834 * 245.79299 * 6 4 2 8 8 C 1.37883 * 120.00160 * 65.78591 * 6 4 2 9 9 N 1.31507 * 119.99847 * 187.31413 * 8 6 4 10 10 Si 1.86803 * 119.99751 * 7.31770 * 8 6 4 11 11 H 1.48498 * 109.46988 * 94.89172 * 10 8 6 12 12 H 1.48504 * 109.46951 * 214.89253 * 10 8 6 13 13 H 1.48497 * 109.47125 * 334.89005 * 10 8 6 14 14 C 1.50693 * 109.47092 * 270.59542 * 4 2 1 15 15 C 1.38653 * 120.78826 * 225.16593 * 14 4 2 16 16 C 1.38202 * 119.16343 * 179.97438 * 15 14 4 17 17 N 1.31871 * 120.76340 * 0.02801 * 16 15 14 18 18 C 1.31866 * 121.72491 * 359.97265 * 17 16 15 19 19 C 1.38202 * 120.76555 * 0.02562 * 18 17 16 20 20 H 1.08999 * 109.46950 * 281.05573 * 1 2 3 21 21 H 1.08997 * 109.47392 * 41.05409 * 1 2 3 22 22 H 1.09004 * 109.47655 * 161.05758 * 1 2 3 23 23 H 1.08997 * 109.47369 * 175.36571 * 3 2 1 24 24 H 1.08998 * 109.47379 * 295.36981 * 3 2 1 25 25 H 1.09003 * 109.46564 * 55.36773 * 3 2 1 26 26 H 0.97002 * 119.99954 * 180.02562 * 9 8 6 27 27 H 1.08001 * 120.42063 * 359.95928 * 15 14 4 28 28 H 1.08000 * 119.61622 * 180.02562 * 16 15 14 29 29 H 1.08006 * 119.61821 * 179.97438 * 18 17 16 30 30 H 1.08008 * 120.41756 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 1 2.9614 -1.1948 0.8709 6 6 1.0337 -1.8727 1.4861 7 1 0.5161 -1.8596 2.4339 8 6 0.8145 -2.9018 0.5950 9 7 -0.1271 -3.7884 0.8332 10 14 1.8552 -3.0366 -0.9504 11 1 2.9900 -3.9621 -0.7037 12 1 1.0229 -3.5596 -2.0635 13 1 2.3798 -1.6954 -1.3125 14 6 2.1617 0.1474 2.3244 15 6 3.3150 0.1095 3.0931 16 6 3.4323 0.9627 4.1740 17 7 2.4636 1.8045 4.4770 18 6 1.3532 1.8680 3.7686 19 6 1.1651 1.0457 2.6738 20 1 -0.3633 0.1971 1.0086 21 1 -0.3634 0.7749 -0.6749 22 1 -0.3634 -0.9720 -0.3336 23 1 3.0819 1.3435 0.0830 24 1 1.7147 1.8684 -0.9285 25 1 1.5804 1.9198 0.8456 26 1 -0.2811 -4.5126 0.2065 27 1 4.1116 -0.5782 2.8505 28 1 4.3276 0.9396 4.7775 29 1 0.5814 2.5702 4.0475 30 1 0.2536 1.1027 2.0973 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259758859.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:49 Heat of formation + Delta-G solvation = 59.112663 kcal Electronic energy + Delta-G solvation = -13728.814536 eV Core-core repulsion = 11524.999364 eV Total energy + Delta-G solvation = -2203.815173 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.92804 -37.01769 -32.46770 -31.80070 -30.62887 -28.20100 -26.66595 -23.73089 -22.92607 -22.34009 -19.74969 -16.92731 -16.25052 -15.79945 -15.22304 -14.56000 -14.05954 -13.69815 -13.40060 -13.34447 -12.85452 -12.50946 -11.95558 -11.63896 -11.18645 -11.10331 -10.64336 -10.40714 -10.36099 -9.86359 -9.60096 -9.05896 -8.77178 -8.57669 -8.50718 -7.20537 -6.20022 -4.26022 1.65447 1.89182 3.34522 3.44661 3.69474 4.34459 4.47763 4.88506 4.89206 5.32454 5.38544 5.43713 5.67359 5.72477 5.89717 6.03835 6.17535 6.21032 6.25055 6.38315 6.50474 6.62002 6.81281 7.03718 7.20195 7.25223 7.35283 7.94049 8.14570 8.42051 8.43649 8.82008 9.41719 10.89314 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.039943 B = 0.012223 C = 0.011502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.834094 B = 2290.165147 C = 2433.730978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.539 5.539 3 C 0.012 3.988 4 C 0.208 3.792 5 H 0.055 0.945 6 C -0.525 4.525 7 H 0.073 0.927 8 C 0.090 3.910 9 N -0.886 5.886 10 Si 0.862 3.138 11 H -0.288 1.288 12 H -0.292 1.292 13 H -0.217 1.217 14 C -0.014 4.014 15 C -0.175 4.175 16 C 0.087 3.913 17 N -0.505 5.505 18 C 0.083 3.917 19 C -0.170 4.170 20 H 0.034 0.966 21 H 0.032 0.968 22 H 0.074 0.926 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.029 0.971 26 H 0.267 0.733 27 H 0.128 0.872 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.108 8.496 0.160 9.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.263 5.263 3 C -0.136 4.136 4 C 0.102 3.898 5 H 0.072 0.928 6 C -0.563 4.563 7 H 0.091 0.909 8 C -0.115 4.115 9 N -0.522 5.522 10 Si 0.688 3.312 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.139 1.139 14 C -0.024 4.024 15 C -0.196 4.196 16 C -0.070 4.070 17 N -0.215 5.215 18 C -0.073 4.073 19 C -0.190 4.190 20 H 0.053 0.947 21 H 0.051 0.949 22 H 0.093 0.907 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.047 0.953 26 H 0.076 0.924 27 H 0.146 0.854 28 H 0.163 0.837 29 H 0.162 0.838 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.263 8.672 0.360 9.670 hybrid contribution 0.036 -0.538 -0.716 0.896 sum 4.299 8.134 -0.356 9.207 Atomic orbital electron populations 1.22200 0.87975 1.01274 0.98918 1.63070 1.08414 1.11084 1.43752 1.22588 0.99678 0.91648 0.99716 1.18981 0.97861 0.90613 0.82309 0.92750 1.20695 1.25262 1.05144 1.05198 0.90873 1.24932 0.94159 0.94481 0.97941 1.69931 1.30279 1.14693 1.37298 0.87024 0.80686 0.80866 0.82648 1.21463 1.21794 1.13875 1.21342 0.91617 0.93013 0.96392 1.22032 0.99235 1.00922 0.97399 1.22553 0.97100 0.92156 0.95168 1.67557 1.01782 1.21941 1.30173 1.22567 0.94852 0.97823 0.92041 1.22250 1.00610 0.97503 0.98614 0.94734 0.94897 0.90690 0.92847 0.93021 0.95308 0.92388 0.85361 0.83684 0.83766 0.84589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.90 8.06 60.06 0.48 1.38 16 2 N -0.54 -11.24 3.15 -246.01 -0.78 -12.01 16 3 C 0.01 0.21 8.42 60.06 0.51 0.72 16 4 C 0.21 4.64 1.89 -70.02 -0.13 4.51 16 5 H 0.05 1.24 6.88 -51.93 -0.36 0.89 16 6 C -0.52 -13.78 7.20 -34.44 -0.25 -14.03 16 7 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 8 C 0.09 2.45 4.26 -17.82 -0.08 2.38 16 9 N -0.89 -25.73 13.96 55.43 0.77 -24.96 16 10 Si 0.86 20.59 26.23 -169.99 -4.46 16.13 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.22 -4.98 5.83 56.52 0.33 -4.65 16 14 C -0.01 -0.28 3.68 -104.32 -0.38 -0.66 16 15 C -0.18 -3.15 9.77 -39.44 -0.39 -3.54 16 16 C 0.09 1.45 11.18 -17.55 -0.20 1.25 16 17 N -0.50 -8.96 10.36 -13.25 -0.14 -9.10 16 18 C 0.08 1.42 11.18 -17.55 -0.20 1.22 16 19 C -0.17 -3.16 6.83 -39.44 -0.27 -3.43 16 20 H 0.03 0.71 4.81 -51.93 -0.25 0.46 16 21 H 0.03 0.58 7.95 -51.93 -0.41 0.16 16 22 H 0.07 1.73 6.04 -51.93 -0.31 1.42 16 23 H 0.05 0.91 8.06 -51.93 -0.42 0.50 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.03 0.49 4.95 -51.93 -0.26 0.24 16 26 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.13 2.08 8.05 -52.49 -0.42 1.66 16 28 H 0.15 1.93 8.06 -52.49 -0.42 1.50 16 29 H 0.14 2.03 8.06 -52.48 -0.42 1.60 16 30 H 0.14 2.51 4.68 -52.48 -0.25 2.26 16 LS Contribution 238.18 15.07 3.59 3.59 Total: -1.00 -29.11 238.18 -5.48 -34.59 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -3.57 Total: 1.95 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -0.90 Total: -10.19 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: -0.14 Total: -46.07 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.46 Total: 16.13 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -29.11 -5.48 -34.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259758859.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.701 kcal (2) G-P(sol) polarization free energy of solvation -29.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds