Wall clock time and date at job start Mon Mar 30 2020 02:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46898 * 111.00286 * 2 1 4 4 C 1.46900 * 111.00206 * 123.95880 * 2 1 3 5 5 H 1.08998 * 109.47191 * 150.59208 * 4 2 1 6 6 C 1.50705 * 109.47174 * 30.59491 * 4 2 1 7 7 H 1.08003 * 119.99834 * 245.79299 * 6 4 2 8 8 C 1.37883 * 120.00160 * 65.78591 * 6 4 2 9 9 N 1.31507 * 119.99847 * 187.31413 * 8 6 4 10 10 Si 1.86803 * 119.99751 * 7.31770 * 8 6 4 11 11 H 1.48498 * 109.46988 * 94.89172 * 10 8 6 12 12 H 1.48504 * 109.46951 * 214.89253 * 10 8 6 13 13 H 1.48497 * 109.47125 * 334.89005 * 10 8 6 14 14 C 1.50693 * 109.47092 * 270.59542 * 4 2 1 15 15 C 1.38653 * 120.78826 * 225.16593 * 14 4 2 16 16 C 1.38202 * 119.16343 * 179.97438 * 15 14 4 17 17 N 1.31871 * 120.76340 * 0.02801 * 16 15 14 18 18 C 1.31866 * 121.72491 * 359.97265 * 17 16 15 19 19 C 1.38202 * 120.76555 * 0.02562 * 18 17 16 20 20 H 1.08999 * 109.46950 * 281.05573 * 1 2 3 21 21 H 1.08997 * 109.47392 * 41.05409 * 1 2 3 22 22 H 1.09004 * 109.47655 * 161.05758 * 1 2 3 23 23 H 1.08997 * 109.47369 * 175.36571 * 3 2 1 24 24 H 1.08998 * 109.47379 * 295.36981 * 3 2 1 25 25 H 1.09003 * 109.46564 * 55.36773 * 3 2 1 26 26 H 0.97002 * 119.99954 * 180.02562 * 9 8 6 27 27 H 1.08001 * 120.42063 * 359.95928 * 15 14 4 28 28 H 1.08000 * 119.61622 * 180.02562 * 16 15 14 29 29 H 1.08006 * 119.61821 * 179.97438 * 18 17 16 30 30 H 1.08008 * 120.41756 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 1 2.9614 -1.1948 0.8709 6 6 1.0337 -1.8727 1.4861 7 1 0.5161 -1.8596 2.4339 8 6 0.8145 -2.9018 0.5950 9 7 -0.1271 -3.7884 0.8332 10 14 1.8552 -3.0366 -0.9504 11 1 2.9900 -3.9621 -0.7037 12 1 1.0229 -3.5596 -2.0635 13 1 2.3798 -1.6954 -1.3125 14 6 2.1617 0.1474 2.3244 15 6 3.3150 0.1095 3.0931 16 6 3.4323 0.9627 4.1740 17 7 2.4636 1.8045 4.4770 18 6 1.3532 1.8680 3.7686 19 6 1.1651 1.0457 2.6738 20 1 -0.3633 0.1971 1.0086 21 1 -0.3634 0.7749 -0.6749 22 1 -0.3634 -0.9720 -0.3336 23 1 3.0819 1.3435 0.0830 24 1 1.7147 1.8684 -0.9285 25 1 1.5804 1.9198 0.8456 26 1 -0.2811 -4.5126 0.2065 27 1 4.1116 -0.5782 2.8505 28 1 4.3276 0.9396 4.7775 29 1 0.5814 2.5702 4.0475 30 1 0.2536 1.1027 2.0973 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259758859.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:49 Heat of formation + Delta-G solvation = 39.397094 kcal Electronic energy + Delta-G solvation = -13729.669468 eV Core-core repulsion = 11524.999364 eV Total energy + Delta-G solvation = -2204.670104 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.36555 -38.59527 -34.50131 -33.27933 -31.99949 -29.97274 -28.23452 -25.53504 -24.31543 -23.81457 -21.39135 -18.92252 -17.78580 -17.25376 -16.59981 -16.38517 -15.59281 -15.19508 -15.08608 -14.83509 -14.54913 -14.12505 -13.62297 -13.13708 -12.81668 -12.63375 -12.39878 -12.18996 -11.94912 -11.67712 -11.58832 -10.71959 -10.44106 -10.19023 -9.93872 -8.83240 -8.30629 -6.38785 0.29940 0.44234 1.43089 1.49404 1.78225 2.48096 2.92860 3.03288 3.61564 3.64422 3.92949 4.01488 4.25958 4.35764 4.50902 4.61267 4.73795 4.78961 4.85589 4.91778 5.04996 5.11706 5.23190 5.36665 5.43247 5.65534 5.87488 6.06266 6.41550 6.54590 6.75950 7.08484 7.32085 8.82727 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.039943 B = 0.012223 C = 0.011502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.834094 B = 2290.165147 C = 2433.730978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.549 5.549 3 C 0.016 3.984 4 C 0.214 3.786 5 H 0.051 0.949 6 C -0.516 4.516 7 H 0.028 0.972 8 C 0.044 3.956 9 N -0.936 5.936 10 Si 0.923 3.077 11 H -0.288 1.288 12 H -0.298 1.298 13 H -0.199 1.199 14 C -0.038 4.038 15 C -0.183 4.183 16 C 0.093 3.907 17 N -0.514 5.514 18 C 0.086 3.914 19 C -0.179 4.179 20 H 0.026 0.974 21 H 0.065 0.935 22 H 0.042 0.958 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.034 0.966 26 H 0.266 0.734 27 H 0.142 0.858 28 H 0.182 0.818 29 H 0.174 0.826 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.561 10.373 -0.110 11.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.273 5.273 3 C -0.132 4.132 4 C 0.108 3.892 5 H 0.069 0.931 6 C -0.554 4.554 7 H 0.046 0.954 8 C -0.157 4.157 9 N -0.574 5.574 10 Si 0.747 3.253 11 H -0.215 1.215 12 H -0.225 1.225 13 H -0.120 1.120 14 C -0.048 4.048 15 C -0.203 4.203 16 C -0.064 4.064 17 N -0.224 5.224 18 C -0.070 4.070 19 C -0.199 4.199 20 H 0.044 0.956 21 H 0.083 0.917 22 H 0.061 0.939 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.160 0.840 28 H 0.199 0.801 29 H 0.191 0.809 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.728 10.574 0.096 12.026 hybrid contribution -0.438 -1.052 -0.522 1.254 sum 5.289 9.522 -0.426 10.901 Atomic orbital electron populations 1.22098 0.88004 1.00509 0.99141 1.62877 1.08413 1.13193 1.42806 1.22615 0.99857 0.89658 1.01062 1.18726 0.96260 0.90211 0.84047 0.93133 1.20761 1.25150 1.06431 1.03071 0.95402 1.25651 0.94987 0.94196 1.00841 1.70056 1.32533 1.15964 1.38834 0.86105 0.78846 0.81406 0.78930 1.21476 1.22466 1.11976 1.21242 0.93290 0.93726 0.96542 1.22257 0.99008 1.01513 0.97523 1.23096 0.97856 0.90806 0.94648 1.67673 1.02163 1.22295 1.30255 1.22993 0.95335 0.97601 0.91052 1.22268 1.00237 0.97933 0.99450 0.95558 0.91680 0.93945 0.92345 0.90854 0.94770 0.92472 0.83975 0.80132 0.80862 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.02 8.06 127.69 1.03 3.04 16 2 N -0.55 -21.93 3.15 -932.23 -2.94 -24.86 16 3 C 0.02 0.51 8.42 127.69 1.07 1.59 16 4 C 0.21 9.39 1.89 43.42 0.08 9.47 16 5 H 0.05 2.25 6.88 -2.39 -0.02 2.23 16 6 C -0.52 -27.70 7.20 25.60 0.18 -27.51 16 7 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 8 C 0.04 2.43 4.26 84.66 0.36 2.79 16 9 N -0.94 -56.19 13.96 21.45 0.30 -55.89 16 10 Si 0.92 42.89 26.23 68.60 1.80 44.69 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 13 H -0.20 -8.56 5.83 99.48 0.58 -7.98 16 14 C -0.04 -1.48 3.68 -19.67 -0.07 -1.56 16 15 C -0.18 -6.18 9.77 22.36 0.22 -5.97 16 16 C 0.09 2.80 11.18 84.68 0.95 3.75 16 17 N -0.51 -16.78 10.36 -195.84 -2.03 -18.81 16 18 C 0.09 2.73 11.18 84.68 0.95 3.68 16 19 C -0.18 -6.42 6.83 22.36 0.15 -6.27 16 20 H 0.03 1.08 4.81 -2.39 -0.01 1.07 16 21 H 0.06 2.15 7.95 -2.39 -0.02 2.13 16 22 H 0.04 1.97 6.04 -2.38 -0.01 1.95 16 23 H 0.06 1.82 8.06 -2.39 -0.02 1.80 16 24 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.03 1.08 4.95 -2.39 -0.01 1.07 16 26 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 27 H 0.14 4.31 8.05 -2.91 -0.02 4.28 16 28 H 0.18 4.06 8.06 -2.91 -0.02 4.04 16 29 H 0.17 4.36 8.06 -2.91 -0.02 4.33 16 30 H 0.13 4.78 4.68 -2.91 -0.01 4.76 16 Total: -1.00 -63.08 238.18 3.06 -60.02 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 1.00 Total: 11.85 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: 4.92 Total: -16.99 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -4.67 Total: -99.57 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.80 Total: 44.69 kcal Total: -63.08 3.06 -60.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259758859.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.418 kcal (2) G-P(sol) polarization free energy of solvation -63.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds