Wall clock time and date at job start Mon Mar 30 2020 02:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32348 * 120.44894 * 2 1 4 4 C 1.31782 * 120.81823 * 180.02562 * 3 2 1 5 5 N 1.31805 * 121.75646 * 359.97424 * 4 3 2 6 6 C 1.32323 * 120.81563 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.44501 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.46953 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47103 * 300.00073 * 7 6 5 10 10 C 1.50698 * 109.47294 * 60.00436 * 7 6 5 11 11 H 1.08005 * 119.99819 * 359.97438 * 10 7 6 12 12 C 1.37875 * 120.00046 * 180.02562 * 10 7 6 13 13 N 1.31518 * 119.99944 * 359.97438 * 12 10 7 14 14 Si 1.86798 * 119.99979 * 179.97438 * 12 10 7 15 15 H 1.48501 * 109.47418 * 89.99710 * 14 12 10 16 16 H 1.48498 * 109.47091 * 209.99770 * 14 12 10 17 17 H 1.48498 * 109.46997 * 329.99580 * 14 12 10 18 18 C 1.38574 * 120.44506 * 180.25444 * 2 1 3 19 19 C 1.50701 * 120.80394 * 359.97438 * 18 2 1 20 20 H 1.09001 * 109.46975 * 89.99961 * 1 2 3 21 21 H 1.08996 * 109.47150 * 210.00214 * 1 2 3 22 22 H 1.09006 * 109.46715 * 330.00632 * 1 2 3 23 23 H 1.07997 * 119.11840 * 179.97438 * 4 3 2 24 24 H 1.08992 * 109.47280 * 59.99899 * 9 7 6 25 25 H 1.09002 * 109.46777 * 180.02562 * 9 7 6 26 26 H 1.09000 * 109.47140 * 300.00046 * 9 7 6 27 27 H 0.96997 * 119.99752 * 180.02562 * 13 12 10 28 28 H 1.08994 * 109.47348 * 270.27008 * 19 18 2 29 29 H 1.09006 * 109.46557 * 30.27019 * 19 18 2 30 30 H 1.09000 * 109.47129 * 150.26574 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1777 1.1409 0.0000 4 6 3.4955 1.1494 -0.0005 5 7 4.1964 0.0332 -0.0005 6 6 3.5945 -1.1452 -0.0005 7 6 4.4041 -2.4163 -0.0011 8 1 3.7326 -3.2748 -0.0006 9 6 5.2860 -2.4587 -1.2507 10 6 5.2736 -2.4587 1.2290 11 1 5.2433 -1.6462 1.9399 12 6 6.1086 -3.5341 1.4463 13 7 6.1458 -4.5232 0.5803 14 14 7.1869 -3.5863 2.9708 15 1 6.4506 -4.2519 4.0754 16 1 8.4273 -4.3467 2.6739 17 1 7.5399 -2.2016 3.3750 18 6 2.2092 -1.1947 -0.0053 19 6 1.4843 -2.5159 -0.0106 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3633 0.8901 0.5138 23 1 4.0150 2.0963 -0.0009 24 1 5.9575 -1.6002 -1.2508 25 1 5.8712 -3.3782 -1.2513 26 1 4.6570 -2.4281 -2.1404 27 1 6.7330 -5.2800 0.7334 28 1 1.3057 -2.8364 1.0157 29 1 0.5312 -2.4052 -0.5278 30 1 2.0917 -3.2615 -0.5237 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259776143.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:55 Heat of formation + Delta-G solvation = 27.892148 kcal Electronic energy + Delta-G solvation = -13321.242216 eV Core-core repulsion = 11116.073221 eV Total energy + Delta-G solvation = -2205.168996 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.49282 -35.16714 -34.07528 -32.54532 -29.84749 -28.71589 -26.60558 -25.16454 -22.98790 -21.93489 -19.80800 -17.30063 -16.05872 -15.65208 -14.64088 -14.51014 -13.81709 -13.16410 -12.95163 -12.70302 -12.52693 -12.36221 -12.28680 -11.65827 -11.45541 -10.96142 -10.92127 -10.49491 -10.27624 -10.06191 -9.91633 -9.54320 -8.96616 -8.42865 -8.36507 -8.30914 -6.04694 -4.09507 1.57314 1.83875 3.29546 3.36172 3.41918 4.36656 4.49713 4.56251 4.91132 5.08840 5.27928 5.34318 5.53468 5.67536 5.78606 5.85496 6.03492 6.08933 6.27378 6.48844 6.56887 6.80785 6.98610 7.11737 7.26174 7.54486 7.74808 7.90420 8.02364 8.30891 8.88699 8.90661 9.53572 11.01580 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.041699 B = 0.009713 C = 0.009263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.322317 B = 2881.927516 C = 3021.930380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.154 3.846 3 N -0.545 5.545 4 C 0.276 3.724 5 N -0.507 5.507 6 C 0.222 3.778 7 C 0.078 3.922 8 H 0.053 0.947 9 C -0.129 4.129 10 C -0.496 4.496 11 H 0.056 0.944 12 C 0.062 3.938 13 N -0.892 5.892 14 Si 0.896 3.104 15 H -0.281 1.281 16 H -0.285 1.285 17 H -0.274 1.274 18 C -0.202 4.202 19 C -0.103 4.103 20 H 0.076 0.924 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.184 0.816 24 H 0.038 0.962 25 H 0.089 0.911 26 H 0.004 0.996 27 H 0.262 0.738 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.508 4.465 -1.676 9.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.009 3.991 3 N -0.261 5.261 4 C -0.013 4.013 5 N -0.221 5.221 6 C 0.077 3.923 7 C 0.059 3.941 8 H 0.071 0.929 9 C -0.187 4.187 10 C -0.535 4.535 11 H 0.075 0.925 12 C -0.139 4.139 13 N -0.531 5.531 14 Si 0.724 3.276 15 H -0.207 1.207 16 H -0.211 1.211 17 H -0.199 1.199 18 C -0.206 4.206 19 C -0.160 4.160 20 H 0.095 0.905 21 H 0.096 0.904 22 H 0.093 0.907 23 H 0.201 0.799 24 H 0.057 0.943 25 H 0.108 0.892 26 H 0.023 0.977 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.937 5.171 -1.707 9.626 hybrid contribution 0.304 -0.645 0.849 1.109 sum -7.633 4.526 -0.858 8.915 Atomic orbital electron populations 1.20688 0.88961 1.03296 1.02823 1.21401 0.96821 0.88235 0.92631 1.68105 1.10721 1.30207 1.17073 1.24800 0.86688 0.97245 0.92530 1.68340 1.41487 0.98537 1.13719 1.22625 0.90411 0.95371 0.83923 1.18075 0.93555 0.86353 0.96136 0.92911 1.21718 0.99448 1.03467 0.94067 1.20894 1.22587 1.04848 1.05122 0.92532 1.24909 0.96854 0.95421 0.96729 1.69868 1.39092 1.08865 1.35229 0.86515 0.79960 0.78158 0.82962 1.20720 1.21110 1.19857 1.21417 0.96114 0.97185 1.05886 1.20690 0.99132 0.93596 1.02600 0.90499 0.90441 0.90687 0.79933 0.94259 0.89227 0.97679 0.92850 0.91018 0.92074 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 9.45 36.01 0.34 -0.93 16 2 C 0.15 2.71 6.82 -82.24 -0.56 2.15 16 3 N -0.55 -10.17 10.38 -10.80 -0.11 -10.28 16 4 C 0.28 5.29 12.29 -92.16 -1.13 4.15 16 5 N -0.51 -11.41 10.07 -10.79 -0.11 -11.52 16 6 C 0.22 5.04 5.42 -82.24 -0.45 4.59 16 7 C 0.08 1.94 2.39 -92.92 -0.22 1.72 16 8 H 0.05 1.33 5.62 -51.93 -0.29 1.04 16 9 C -0.13 -3.17 8.88 37.16 0.33 -2.84 16 10 C -0.50 -13.69 8.45 -34.44 -0.29 -13.98 16 11 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 12 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 13 N -0.89 -24.85 11.32 55.43 0.63 -24.22 16 14 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 18 C -0.20 -3.90 5.91 -104.36 -0.62 -4.51 16 19 C -0.10 -1.65 8.68 36.01 0.31 -1.33 16 20 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 21 H 0.08 0.85 6.83 -51.93 -0.35 0.50 16 22 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 23 H 0.18 2.81 8.06 -52.49 -0.42 2.39 16 24 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 25 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 26 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 0.78 6.84 -51.93 -0.36 0.42 16 30 H 0.08 1.39 6.22 -51.93 -0.32 1.06 16 LS Contribution 252.54 15.07 3.81 3.81 Total: -1.00 -29.92 252.54 -6.90 -36.82 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -3.71 Total: -1.64 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -2.38 Total: -9.37 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.41 Total: -46.01 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.92 -6.90 -36.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259776143.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.715 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds