Wall clock time and date at job start Mon Mar 30 2020 02:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32348 * 120.44894 * 2 1 4 4 C 1.31782 * 120.81823 * 180.02562 * 3 2 1 5 5 N 1.31805 * 121.75646 * 359.97424 * 4 3 2 6 6 C 1.32323 * 120.81563 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.44501 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.46953 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47103 * 300.00073 * 7 6 5 10 10 C 1.50698 * 109.47294 * 60.00436 * 7 6 5 11 11 H 1.08005 * 119.99819 * 359.97438 * 10 7 6 12 12 C 1.37875 * 120.00046 * 180.02562 * 10 7 6 13 13 N 1.31518 * 119.99944 * 359.97438 * 12 10 7 14 14 Si 1.86798 * 119.99979 * 179.97438 * 12 10 7 15 15 H 1.48501 * 109.47418 * 89.99710 * 14 12 10 16 16 H 1.48498 * 109.47091 * 209.99770 * 14 12 10 17 17 H 1.48498 * 109.46997 * 329.99580 * 14 12 10 18 18 C 1.38574 * 120.44506 * 180.25444 * 2 1 3 19 19 C 1.50701 * 120.80394 * 359.97438 * 18 2 1 20 20 H 1.09001 * 109.46975 * 89.99961 * 1 2 3 21 21 H 1.08996 * 109.47150 * 210.00214 * 1 2 3 22 22 H 1.09006 * 109.46715 * 330.00632 * 1 2 3 23 23 H 1.07997 * 119.11840 * 179.97438 * 4 3 2 24 24 H 1.08992 * 109.47280 * 59.99899 * 9 7 6 25 25 H 1.09002 * 109.46777 * 180.02562 * 9 7 6 26 26 H 1.09000 * 109.47140 * 300.00046 * 9 7 6 27 27 H 0.96997 * 119.99752 * 180.02562 * 13 12 10 28 28 H 1.08994 * 109.47348 * 270.27008 * 19 18 2 29 29 H 1.09006 * 109.46557 * 30.27019 * 19 18 2 30 30 H 1.09000 * 109.47129 * 150.26574 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1777 1.1409 0.0000 4 6 3.4955 1.1494 -0.0005 5 7 4.1964 0.0332 -0.0005 6 6 3.5945 -1.1452 -0.0005 7 6 4.4041 -2.4163 -0.0011 8 1 3.7326 -3.2748 -0.0006 9 6 5.2860 -2.4587 -1.2507 10 6 5.2736 -2.4587 1.2290 11 1 5.2433 -1.6462 1.9399 12 6 6.1086 -3.5341 1.4463 13 7 6.1458 -4.5232 0.5803 14 14 7.1869 -3.5863 2.9708 15 1 6.4506 -4.2519 4.0754 16 1 8.4273 -4.3467 2.6739 17 1 7.5399 -2.2016 3.3750 18 6 2.2092 -1.1947 -0.0053 19 6 1.4843 -2.5159 -0.0106 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3633 0.8901 0.5138 23 1 4.0150 2.0963 -0.0009 24 1 5.9575 -1.6002 -1.2508 25 1 5.8712 -3.3782 -1.2513 26 1 4.6570 -2.4281 -2.1404 27 1 6.7330 -5.2800 0.7334 28 1 1.3057 -2.8364 1.0157 29 1 0.5312 -2.4052 -0.5278 30 1 2.0917 -3.2615 -0.5237 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259776143.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:55 Heat of formation + Delta-G solvation = 10.485783 kcal Electronic energy + Delta-G solvation = -13321.997013 eV Core-core repulsion = 11116.073221 eV Total energy + Delta-G solvation = -2205.923792 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.98763 -36.95444 -35.46934 -34.37932 -31.71964 -29.91767 -28.01886 -27.25507 -24.65464 -23.36606 -21.53347 -18.98539 -17.86717 -17.34781 -16.38209 -16.05058 -15.22939 -14.80910 -14.73702 -14.01396 -13.85625 -13.70991 -13.52646 -13.37392 -12.95261 -12.85847 -12.78245 -12.36993 -12.13665 -11.88664 -11.60213 -11.23112 -10.83065 -10.47992 -9.88915 -9.87341 -8.13411 -6.24830 0.11563 0.29813 1.39015 1.41046 1.51315 2.41298 2.94589 3.14917 3.27609 3.44401 3.69784 4.03697 4.13763 4.56798 4.61545 4.74807 4.78464 4.83591 4.87140 4.99029 5.06760 5.17889 5.20610 5.28400 5.52396 5.68825 5.79747 5.97346 6.21602 6.36066 6.77520 7.36215 7.41312 8.91678 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.041699 B = 0.009713 C = 0.009263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.322317 B = 2881.927516 C = 3021.930380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.157 3.843 3 N -0.546 5.546 4 C 0.269 3.731 5 N -0.543 5.543 6 C 0.189 3.811 7 C 0.077 3.923 8 H 0.046 0.954 9 C -0.116 4.116 10 C -0.513 4.513 11 H 0.037 0.963 12 C 0.020 3.980 13 N -0.911 5.911 14 Si 0.953 3.047 15 H -0.272 1.272 16 H -0.278 1.278 17 H -0.279 1.279 18 C -0.210 4.210 19 C -0.099 4.099 20 H 0.100 0.900 21 H 0.098 0.902 22 H 0.085 0.915 23 H 0.214 0.786 24 H 0.025 0.975 25 H 0.068 0.932 26 H 0.021 0.979 27 H 0.265 0.735 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.172 4.973 -1.404 11.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.011 3.989 3 N -0.261 5.261 4 C -0.018 4.018 5 N -0.257 5.257 6 C 0.045 3.955 7 C 0.058 3.942 8 H 0.063 0.937 9 C -0.175 4.175 10 C -0.552 4.552 11 H 0.056 0.944 12 C -0.179 4.179 13 N -0.551 5.551 14 Si 0.779 3.221 15 H -0.198 1.198 16 H -0.203 1.203 17 H -0.204 1.204 18 C -0.214 4.214 19 C -0.156 4.156 20 H 0.118 0.882 21 H 0.116 0.884 22 H 0.104 0.896 23 H 0.230 0.770 24 H 0.044 0.956 25 H 0.087 0.913 26 H 0.040 0.960 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.119 0.881 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.604 5.672 -1.438 11.246 hybrid contribution 0.760 -0.743 0.738 1.294 sum -8.844 4.929 -0.699 10.149 Atomic orbital electron populations 1.20861 0.84945 1.04911 1.04727 1.22217 0.99251 0.87136 0.90262 1.68251 1.10358 1.30652 1.16889 1.25377 0.87273 0.97396 0.91786 1.68235 1.42962 0.99363 1.15161 1.22356 0.91916 0.94621 0.86606 1.17908 0.93374 0.87841 0.95035 0.93653 1.21533 0.99236 1.01570 0.95113 1.21049 1.23666 1.04448 1.06015 0.94433 1.25583 0.97897 0.95121 0.99300 1.69958 1.39561 1.09163 1.36378 0.85631 0.78631 0.77815 0.80031 1.19764 1.20294 1.20373 1.21717 0.94938 0.99388 1.05334 1.20730 1.00264 0.91443 1.03197 0.88171 0.88365 0.89592 0.76996 0.95609 0.91288 0.95952 0.92608 0.90559 0.88097 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.04 9.45 71.24 0.67 -1.37 16 2 C 0.16 5.13 6.82 42.56 0.29 5.42 16 3 N -0.55 -19.24 10.38 -188.09 -1.95 -21.19 16 4 C 0.27 10.08 12.29 180.88 2.22 12.30 16 5 N -0.54 -24.57 10.07 -188.06 -1.89 -26.46 16 6 C 0.19 8.64 5.42 42.58 0.23 8.87 16 7 C 0.08 3.95 2.39 -12.29 -0.03 3.92 16 8 H 0.05 2.35 5.62 -2.39 -0.01 2.34 16 9 C -0.12 -5.86 8.88 71.98 0.64 -5.22 16 10 C -0.51 -28.99 8.45 25.60 0.22 -28.77 16 11 H 0.04 2.21 7.74 -2.91 -0.02 2.18 16 12 C 0.02 1.12 5.30 84.65 0.45 1.56 16 13 N -0.91 -51.40 11.32 21.45 0.24 -51.16 16 14 Si 0.95 44.22 29.54 68.60 2.03 46.25 16 15 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 17 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 18 C -0.21 -7.82 5.91 -19.69 -0.12 -7.94 16 19 C -0.10 -2.98 8.68 71.24 0.62 -2.36 16 20 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 21 H 0.10 1.68 6.83 -2.39 -0.02 1.67 16 22 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 23 H 0.21 6.25 8.06 -2.91 -0.02 6.23 16 24 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 25 H 0.07 3.73 6.07 -2.39 -0.01 3.71 16 26 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 28 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.10 2.18 6.84 -2.38 -0.02 2.17 16 30 H 0.06 2.13 6.22 -2.39 -0.01 2.12 16 Total: -1.00 -64.86 252.54 4.75 -60.11 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: 1.13 Total: 6.04 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 5.19 Total: -13.58 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -3.60 Total: -98.82 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -64.86 4.75 -60.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259776143.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.599 kcal (2) G-P(sol) polarization free energy of solvation -64.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds